Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G2011 Ceratophyllum demersum HOM05D005396 ORTHO05D006400 1.4e-190 669.5 331 100.0
MBI13_g02393_MAGBIO Magnolia biondii HOM05D005396 ORTHO05D006400 7.4e-104 381.3 329 56.8
TAR623G1186 Trochodendron aralioides HOM05D005396 ORTHO05D006400 4.8e-103 378.6 330 56.1
Nn4g25074 Nelumbo nucifera HOM05D005396 ORTHO05D006400 2.0e-101 373.2 318 58.2
GSVIVG01037451001 Vitis vinifera HOM05D005396 ORTHO05D006400 7.6e-101 371.3 329 56.2
Aqoxy5G02307 Aquilegia oxysepala HOM05D005396 ORTHO05D006400 1.2e-98 364.0 333 55.0
Actinidia06861 Actinidia chinensis HOM05D005396 ORTHO05D006400 4.6e-98 362.1 337 54.9
Cfa013848 Carpinus fangiana HOM05D005396 ORTHO05D006400 2.5e-96 356.3 343 53.4
QL93p0267_0015 Quercus lobata HOM05D005396 ORTHO05D006400 2.5e-96 356.3 331 53.8
Cpa.g.sc103.64 Carica papaya HOM05D005396 ORTHO05D006400 1.8e-94 350.1 276 60.5
RcHm_v2.0_Chr5g0056531 Rosa chinensis HOM05D005396 ORTHO05D006400 4.1e-94 349.0 331 53.5
Prupe.6G153500 Prunus persica HOM05D005396 ORTHO05D006400 5.3e-94 348.6 332 53.3
HanXRQChr01g0021191 Helianthus annuus HOM05D005396 ORTHO05D006400 1.2e-93 347.4 327 53.2
Hund20984 Selenicereus undatus HOM05D005396 ORTHO05D006400 1.5e-93 347.1 335 53.7
MD11G1180700 Malus domestica HOM05D005396 ORTHO05D006400 2.0e-93 346.7 333 53.2
FvH4_3g30540 Fragaria vesca HOM05D005396 ORTHO05D006400 3.4e-93 345.9 330 53.6
FAN11G0079 Fragaria x ananassa HOM05D005396 ORTHO05D006400 7.7e-93 344.7 330 53.6
FAN25G1745 Fragaria x ananassa HOM05D005396 ORTHO05D006400 1.3e-92 344.0 321 53.9
PGSC0003DMG400032195 Solanum tuberosum HOM05D005396 ORTHO05D006400 1.3e-92 344.0 331 54.4
Sp6g23380 Schrenkiella parvula HOM05D005396 ORTHO05D006400 1.7e-92 343.6 274 60.9
Solyc01g006210.4 Solanum lycopersicum HOM05D005396 ORTHO05D006400 1.7e-92 343.6 329 53.5
Sc12g0000550 Simmondsia chinensis HOM05D005396 ORTHO05D006400 2.2e-92 343.2 250 64.4
CAN.G140.42 Capsicum annuum HOM05D005396 ORTHO05D006400 5.0e-92 342.0 331 53.8
A10p18950 Brassica napus HOM05D005396 ORTHO05D006400 6.5e-92 341.7 296 57.4
BraA10t43972Z Brassica rapa HOM05D005396 ORTHO05D006400 6.5e-92 341.7 296 57.4
Sopen01g002210 Solanum pennellii HOM05D005396 ORTHO05D006400 8.5e-92 341.3 331 53.5
RhsimUnG0154800 Rhododendron simsii HOM05D005396 ORTHO05D006400 1.1e-91 340.9 338 53.0
ECA248G0004 Erigeron canadensis HOM05D005396 ORTHO05D006400 1.4e-91 340.5 262 61.8
BcaC04g19522 Brassica carinata HOM05D005396 ORTHO05D006400 2.5e-91 339.7 275 60.0
BolC9t58356H Brassica oleracea HOM05D005396 ORTHO05D006400 3.2e-91 339.3 275 60.0
Oeu058539.1 Olea europaea HOM05D005396 ORTHO05D006400 3.2e-91 339.3 296 54.7
FAN16G3367 Fragaria x ananassa HOM05D005396 ORTHO05D006400 7.2e-91 338.2 330 52.4
Zm00001eb405340 Zea mays HOM05D005396 ORTHO05D006400 7.2e-91 338.2 336 50.6
PGR119G0906 Punica granatum HOM05D005396 ORTHO05D006400 9.4e-91 337.8 270 58.1
Thhalv10013965m.g Eutrema salsugineum HOM05D005396 ORTHO05D006400 1.2e-90 337.4 259 61.8
Rhsim13G0228100 Rhododendron simsii HOM05D005396 ORTHO05D006400 1.2e-90 337.4 297 54.5
Ah.15g099430 Amaranthus hybridus HOM05D005396 ORTHO05D006400 1.6e-90 337.0 330 53.0
C09p54930 Brassica napus HOM05D005396 ORTHO05D006400 1.6e-90 337.0 259 61.4
Thecc.09G337500 Theobroma cacao HOM05D005396 ORTHO05D006400 1.6e-90 337.0 272 57.7
SGA_v2.0_scaffold3G01566 Striga asiatica HOM05D005396 ORTHO05D006400 7.9e-90 334.7 336 51.5
Carub.0006s1945 Capsella rubella HOM05D005396 ORTHO05D006400 1.0e-89 334.3 296 56.1
Eucgr.J00626 Eucalyptus grandis HOM05D005396 ORTHO05D006400 1.0e-89 334.3 331 52.6
Hma1.2p1_0143F.1_g064480 Hydrangea macrophylla HOM05D005396 ORTHO05D006400 1.0e-89 334.3 320 51.9
Atru.chr3.1131 Acer truncatum HOM05D005396 ORTHO05D006400 2.3e-89 333.2 263 59.7
AT5G21140 Arabidopsis thaliana HOM05D005396 ORTHO05D006400 2.3e-89 333.2 260 61.2
Peaxi162Scf00441g00618 Petunia axillaris HOM05D005396 ORTHO05D006400 3.9e-89 332.4 330 53.3
Atru.chr3.1122 Acer truncatum HOM05D005396 ORTHO05D006400 5.1e-89 332.0 263 59.3
TWI31G0083 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 5.1e-89 332.0 319 51.7
Nitab4.5_0001568g0090 Nicotiana tabacum HOM05D005396 ORTHO05D006400 8.8e-89 331.3 274 58.4
AL6G32750 Arabidopsis lyrata HOM05D005396 ORTHO05D006400 1.1e-88 330.9 253 61.3
Lsat_1_v5_gn_1_68341 Lactuca sativa HOM05D005396 ORTHO05D006400 1.1e-88 330.9 291 56.0
AUR62001615 Chenopodium quinoa HOM05D005396 ORTHO05D006400 1.5e-88 330.5 282 57.1
TWI79G1618 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 2.0e-88 330.1 339 51.0
BcaB05g22770 Brassica carinata HOM05D005396 ORTHO05D006400 2.5e-88 329.7 259 59.8
CANSAT54G2052 Cannabis sativa HOM05D005396 ORTHO05D006400 2.5e-88 329.7 274 56.6
Cc01_g01860 Coffea canephora HOM05D005396 ORTHO05D006400 2.5e-88 329.7 296 55.4
Manes.04G053800 Manihot esculenta HOM05D005396 ORTHO05D006400 2.5e-88 329.7 330 51.2
Aa31LG1G13640 Aethionema arabicum HOM05D005396 ORTHO05D006400 3.3e-88 329.3 298 52.7
CARHR191730 Cardamine hirsuta HOM05D005396 ORTHO05D006400 3.3e-88 329.3 260 60.0
PSO384G1109 Papaver somniferum HOM05D005396 ORTHO05D006400 5.7e-88 328.6 326 53.1
Migut.N02270 Erythranthe guttata HOM05D005396 ORTHO05D006400 7.4e-88 328.2 298 54.0
Gorai.003G140300 Gossypium raimondii HOM05D005396 ORTHO05D006400 1.3e-87 327.4 272 57.0
ClCG02G024200 Citrullus lanatus HOM05D005396 ORTHO05D006400 1.7e-87 327.0 282 54.6
Dinv09746 Davidia involucrata HOM05D005396 ORTHO05D006400 1.7e-87 327.0 238 63.4
BcaB08g36475 Brassica carinata HOM05D005396 ORTHO05D006400 2.2e-87 326.6 259 60.2
MELO3C014703.2 Cucumis melo HOM05D005396 ORTHO05D006400 3.7e-87 325.9 283 55.1
Gohir.A03G035066 Gossypium hirsutum HOM05D005396 ORTHO05D006400 3.7e-87 325.9 272 56.6
arahy.Tifrunner.gnm1.ann1.MJD0TM Arachis hypogaea HOM05D005396 ORTHO05D006400 6.3e-87 325.1 329 50.5
Gohir.D03G133200 Gossypium hirsutum HOM05D005396 ORTHO05D006400 8.2e-87 324.7 296 53.4
THA.LOC104799054 Tarenaya hassleriana HOM05D005396 ORTHO05D006400 8.2e-87 324.7 318 51.6
EL10Ac7g16216 Beta vulgaris HOM05D005396 ORTHO05D006400 1.1e-86 324.3 378 47.4
BNapus_Darmor_BZH_scaffold_38p01120 Brassica napus HOM05D005396 ORTHO05D006400 1.4e-86 323.9 278 57.6
BraA02t05619Z Brassica rapa HOM05D005396 ORTHO05D006400 1.4e-86 323.9 278 57.6
ATR0307G059 Amborella trichopoda HOM05D005396 ORTHO05D006400 1.8e-86 323.6 334 52.1
BcaC03g13834 Brassica carinata HOM05D005396 ORTHO05D006400 1.8e-86 323.6 288 55.6
HPP92_018982 Vanilla planifolia HOM05D005396 ORTHO05D006400 2.4e-86 323.2 333 49.2
BolC2t07100H Brassica oleracea HOM05D005396 ORTHO05D006400 3.1e-86 322.8 288 55.6
Ciclev10017900m.g Citrus clementina HOM05D005396 ORTHO05D006400 9.1e-86 321.2 333 49.8
Lalb_Chr19g0127081 Lupinus albus HOM05D005396 ORTHO05D006400 4.5e-85 318.9 258 56.6
MSTRG.17554 Avicennia marina HOM05D005396 ORTHO05D006400 7.7e-85 318.2 331 49.5
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 1.3e-84 317.4 275 56.0
CsaV3_4G017330 Cucumis sativus L. HOM05D005396 ORTHO05D006400 1.7e-84 317.0 274 54.0
DCAR_024368 Daucus carota HOM05D005396 ORTHO05D006400 2.2e-84 316.6 265 56.6
Potri.004G195600 Populus trichocarpa HOM05D005396 ORTHO05D006400 5.0e-84 315.5 331 49.8
Phvul.L001837 Phaseolus vulgaris HOM05D005396 ORTHO05D006400 8.5e-84 314.7 341 47.5
Glyma.20G050900 Glycine max HOM05D005396 ORTHO05D006400 1.1e-83 314.3 265 54.7
Lj6g0008952 Lotus japonicus HOM05D005396 ORTHO05D006400 1.4e-83 313.9 261 57.1
SalBow2G1218 Salvia bowleyana HOM05D005396 ORTHO05D006400 7.2e-83 311.6 261 58.6
Sed0007754 Sechium edule HOM05D005396 ORTHO05D006400 7.2e-83 311.6 248 56.0
vmacro04253 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 1.6e-82 310.5 347 48.1
VMungo0540G2152 Vigna mungo HOM05D005396 ORTHO05D006400 2.7e-82 309.7 265 53.6
Haze_22522 Corylus avellana HOM05D005396 ORTHO05D006400 5.1e-81 305.4 328 50.0
Dinv36333 Davidia involucrata HOM05D005396 ORTHO05D006400 8.8e-81 304.7 213 66.7
arahy.Tifrunner.gnm1.ann1.MU94NL Arachis hypogaea HOM05D005396 ORTHO05D006400 2.6e-80 303.1 252 56.7
Ca_16226_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 2.6e-80 303.1 349 46.4
Ca_30133_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 2.6e-80 303.1 349 46.4
Os12g0127100 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 2.6e-80 303.1 338 47.3
Os11g0130300 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 4.4e-80 302.4 338 47.0
Medtr3g078850 Medicago truncatula HOM05D005396 ORTHO05D006400 1.7e-79 300.4 257 54.1
TPR.G28402 Trifolium pratense HOM05D005396 ORTHO05D006400 5.3e-78 295.4 356 44.4
PSO339G5547 Papaver somniferum HOM05D005396 ORTHO05D006400 5.9e-77 292.0 234 59.0
Duzib170G1145 Durio zibethinus HOM05D005396 ORTHO05D006400 1.0e-76 291.2 335 47.2
Sabra04G0132800 Salix brachista HOM05D005396 ORTHO05D006400 6.5e-76 288.5 342 45.6
FAN21G3982 Fragaria x ananassa HOM05D005396 ORTHO05D006400 1.1e-75 287.7 212 63.7
Nitab4.5_0005132g0020 Nicotiana tabacum HOM05D005396 ORTHO05D006400 1.1e-75 287.7 291 52.6
Lj2A553G20 Lonicera japonica HOM05D005396 ORTHO05D006400 3.2e-75 286.2 211 64.0
EL10Ac1g01677 Beta vulgaris HOM05D005396 ORTHO05D006400 6.1e-74 282.0 335 46.0
EL10Ac7g16212 Beta vulgaris HOM05D005396 ORTHO05D006400 6.7e-73 278.5 336 45.5
Psat0s646g0040 Pisum sativum HOM05D005396 ORTHO05D006400 1.2e-64 251.1 235 52.3
SEGI_19301 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 1.2e-61 241.1 209 56.0
Pp3c20_10070 Physcomitrium patens HOM05D005396 ORTHO05D006400 4.2e-59 232.6 249 47.4
BcaC03g13835 Brassica carinata HOM05D005396 ORTHO05D006400 2.8e-55 219.9 240 49.6
BolC2t07101H Brassica oleracea HOM05D005396 ORTHO05D006400 2.8e-55 219.9 240 49.6
AUR62020162 Chenopodium quinoa HOM05D005396 ORTHO05D006400 4.9e-55 219.2 257 47.9
BraA02t05620Z Brassica rapa HOM05D005396 ORTHO05D006400 1.6e-53 214.2 238 48.3
SHI25366 Sapria himalayana HOM05D005396 ORTHO05D000023 1.2e-50 204.5 331 36.9
BNapus_Darmor_BZH_scaffold_38p01110 Brassica napus HOM05D005396 ORTHO05D006400 1.0e-49 201.4 241 46.1
EL10Ac7g16203 Beta vulgaris HOM05D005396 ORTHO05D006400 1.8e-49 200.7 205 50.7
SMO239G0090 Selaginella moellendorffii HOM05D005396 ORTHO05D006400 1.1e-46 191.4 225 42.7
unitig_60.g25792 Utricularia gibba HOM05D005396 ORTHO05D006400 5.0e-44 182.6 282 35.8
CiPaw.07G159800 Carya illinoinensis HOM05D005396 ORTHO05D006400 6.6e-44 182.2 235 44.3
EL10Ac7g16205 Beta vulgaris HOM05D005396 ORTHO05D006400 4.7e-42 176.0 404 32.4
CBR_g4478 Chara braunii HOM05D005396 ORTHO05D000048 2.9e-39 166.8 208 38.5
AagrBONN_evm.TU.Sc2ySwM_368.35 Anthoceros agrestis HOM05D005396 ORTHO05D006400 9.2e-38 161.8 199 39.7
CSS0010626 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 1.2e-37 161.4 124 60.5
DCAR_024367 Daucus carota HOM05D005396 ORTHO05D006400 1.6e-37 161.0 164 54.3
EL10Ac7g16214 Beta vulgaris HOM05D005396 ORTHO05D006400 2.3e-36 157.1 264 39.0
EL10Ac7g16209 Beta vulgaris HOM05D005396 ORTHO05D006400 4.3e-35 152.9 195 43.6
Zm00001eb199750 Zea mays HOM05D005396 ORTHO05D006400 3.1e-33 146.7 200 42.0
CSS0025534 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 1.2e-32 144.8 111 64.0
vmacro22428 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 1.9e-30 137.5 182 44.0
RcHm_v2.0_Chr6g0256561 Rosa chinensis HOM05D005396 ORTHO05D006400 7.1e-30 135.6 106 54.7
RcHm_v2.0_Chr5g0056151 Rosa chinensis HOM05D005396 ORTHO05D006400 1.7e-28 131.0 176 42.0
Psat5g030400 Pisum sativum HOM05D001137 ORTHO05D006400 1.3e-23 114.8 89 55.1
Mapoly0185s0017 Marchantia polymorpha HOM05D005396 ORTHO05D006400 3.2e-22 110.2 260 30.4
MCO07G491 Micromonas commoda HOM05D005396 ORTHO05D006400 5.2e-17 92.8 194 28.9
PRCOL_00005415 Prasinoderma coloniale HOM05D005396 ORTHO05D006400 1.0e-12 78.6 191 30.4
Actinidia16276 Actinidia chinensis HOM05D005396 ORTHO05D006400 9.9e-08 62.0 121 34.7
HanXRQChr08g0223711 Helianthus annuus HOM05D005396 ORTHO05D006400 2.9e-07 60.5 50 52.0
SEGI_06155 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 4.2e-06 56.6 49 40.8


User provided reference genes

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