Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G1944 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 3600.4 1871 100.0
CDE08G1677 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 3252.2 1859 91.4
TAR628G0359 Trochodendron aralioides HOM05D002037 ORTHO05D005261 0.0e+00 2159.8 1869 63.4
Aqoxy6G00128 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 0.0e+00 2061.2 1899 61.7
Ciclev10007230m.g Citrus clementina HOM05D002037 ORTHO05D005261 0.0e+00 2018.4 1838 60.8
CSS0033264 Camellia sinensis var. sinensis HOM05D002037 ORTHO05D005261 0.0e+00 2013.8 1845 60.7
Thecc.09G001100 Theobroma cacao HOM05D002037 ORTHO05D005261 0.0e+00 1982.6 1880 59.4
Lj7A751T36 Lonicera japonica HOM05D002037 ORTHO05D005261 0.0e+00 1980.3 1869 60.2
CiPaw.08G017100 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 1977.2 1874 59.4
CiPaw.07G216200 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 1972.2 1906 59.2
MBI09_g40924_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1965.3 1870 60.1
COL.COLO4_18641 Corchorus olitorius HOM05D002037 ORTHO05D005261 0.0e+00 1963.3 1810 60.3
QL12p030895 Quercus lobata HOM05D002037 ORTHO05D005261 0.0e+00 1963.3 1847 59.7
Prupe.1G463700 Prunus persica HOM05D002037 ORTHO05D005261 0.0e+00 1960.3 1833 60.0
Gohir.A08G253200 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 1954.9 1877 59.8
Haze_21662 Corylus avellana HOM05D002037 ORTHO05D005261 0.0e+00 1953.3 1860 59.3
MD08G1132100 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 1948.7 1826 59.9
Hund19377 Selenicereus undatus HOM05D002037 ORTHO05D005261 0.0e+00 1948.3 1873 59.4
Gorai.004G293400 Gossypium raimondii HOM05D002037 ORTHO05D005261 0.0e+00 1941.0 1845 59.3
Potri.006G280200 Populus trichocarpa HOM05D002037 ORTHO05D005261 0.0e+00 1937.2 1841 59.8
Actinidia03327 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1933.3 1801 60.0
Gohir.D08G274900 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 1926.0 1835 59.1
TWI32G0793 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 1917.5 1854 58.8
PSO017G1653 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1914.4 1874 58.8
PSO063G0181 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1913.7 1873 58.9
RcHm_v2.0_Chr6g0312521 Rosa chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1913.7 1836 58.6
arahy.Tifrunner.gnm1.ann1.8Q3S3N Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 1910.2 1834 58.5
TWI63G1280 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 1910.2 1852 58.8
arahy.Tifrunner.gnm1.ann1.WQ4U6A Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 1909.0 1832 58.4
CAN.G195.8 Capsicum annuum HOM05D002037 ORTHO05D005261 0.0e+00 1906.7 1873 58.1
Cfa013233 Carpinus fangiana HOM05D002037 ORTHO05D005261 0.0e+00 1906.0 1805 59.9
HanXRQChr03g0082961 Helianthus annuus HOM05D002037 ORTHO05D005261 0.0e+00 1905.2 1826 58.3
DCAR_002179 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 1901.3 1883 57.9
Glyma.06G075000 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 1898.2 1866 59.0
Eucgr.C03980 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 1897.9 1823 58.5
Sopen08g023030 Solanum pennellii HOM05D002037 ORTHO05D005261 0.0e+00 1897.1 1881 57.6
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 0.0e+00 1890.5 1814 59.3
FvH4_2g30560 Fragaria vesca HOM05D002037 ORTHO05D005261 0.0e+00 1887.8 1825 58.1
CsaV3_3G046860 Cucumis sativus L. HOM05D002037 ORTHO05D005261 0.0e+00 1887.1 1837 58.0
AUR62028065 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 1886.7 1857 57.8
Solyc08g074370.4 Solanum lycopersicum HOM05D002037 ORTHO05D005261 0.0e+00 1886.7 1869 57.6
FAN24G1054 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 1885.5 1830 58.0
Manes.16G138600 Manihot esculenta HOM05D002037 ORTHO05D005261 0.0e+00 1885.5 1868 57.8
Sc09g0007440 Simmondsia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1882.1 1830 57.6
Phvul.009G099700 Phaseolus vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 1879.8 1838 58.1
GSVIVG01035587001 Vitis vinifera HOM05D002037 ORTHO05D005261 0.0e+00 1879.4 1856 58.7
MD15G1113300 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 1876.7 1869 58.3
VMungo1309G2917 Vigna mungo HOM05D002037 ORTHO05D005261 0.0e+00 1876.3 1852 57.4
Glyma.04G073900 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 1874.8 1861 57.9
MSTRG.25765 Avicennia marina HOM05D002037 ORTHO05D005261 0.0e+00 1869.7 1849 57.3
Cc00_g09840 Coffea canephora HOM05D002037 ORTHO05D005261 0.0e+00 1868.6 1860 56.8
FAN27G2203 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 1868.2 1826 57.8
Duzib187G1591 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 1865.9 1859 57.1
vmacro05091 Vaccinium macrocarpon HOM05D002037 ORTHO05D005261 0.0e+00 1864.7 1797 58.3
EL10Ac2g03672 Beta vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 1864.0 1843 56.5
Sed0009824 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 1862.0 1835 56.9
ClCG05G017350 Citrullus lanatus HOM05D002037 ORTHO05D005261 0.0e+00 1861.7 1942 55.5
Atru.chr7.2709 Acer truncatum HOM05D002037 ORTHO05D005261 0.0e+00 1860.9 1798 58.9
MELO3C003650.2 Cucumis melo HOM05D002037 ORTHO05D005261 0.0e+00 1858.6 1869 57.2
PGR044G2064 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 1857.0 1867 57.2
ATR0584G173 Amborella trichopoda HOM05D002037 ORTHO05D005261 0.0e+00 1853.6 1840 57.1
AUR62020667 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 1852.0 1855 57.3
Lj5g0025434 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1844.7 1868 57.5
PGR044G2421 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 1843.6 1830 57.0
Nn1g08375 Nelumbo nucifera HOM05D002037 ORTHO05D005261 0.0e+00 1842.8 1684 60.9
TPR.G12447 Trifolium pratense HOM05D002037 ORTHO05D005261 0.0e+00 1833.9 1825 56.9
Medtr3g108470 Medicago truncatula HOM05D002037 ORTHO05D005261 0.0e+00 1832.0 1858 56.5
Sed0015816 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 1832.0 1849 56.4
Migut.A00462 Erythranthe guttata HOM05D002037 ORTHO05D005261 0.0e+00 1830.1 1832 56.8
Psat5g026040 Pisum sativum HOM05D002037 ORTHO05D005261 0.0e+00 1827.0 1854 56.2
SalBow4G1905 Salvia bowleyana HOM05D002037 ORTHO05D005261 0.0e+00 1826.6 1830 57.4
Lsat_1_v5_gn_5_59360 Lactuca sativa HOM05D002037 ORTHO05D005261 0.0e+00 1822.4 1824 56.4
ECA240G1370 Erigeron canadensis HOM05D002037 ORTHO05D005261 0.0e+00 1818.5 1857 56.4
Peaxi162Scf00213g01313 Petunia axillaris HOM05D002037 ORTHO05D005261 0.0e+00 1816.2 1798 57.2
CANSAT25G0165 Cannabis sativa HOM05D002037 ORTHO05D005261 0.0e+00 1815.0 1869 56.6
Lalb_Chr11g0064041 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 1814.7 1841 55.5
SGA_v2.0_scaffold27G11691 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 1805.4 1890 55.7
Cpa.g.sc148.12 Carica papaya HOM05D002037 ORTHO05D005261 0.0e+00 1800.8 1863 56.3
Lalb_Chr08g0243691 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 1778.5 1858 55.1
SGA_v2.0_scaffold193G40648 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 1774.2 1855 55.3
Lj1g0006019 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1770.7 1841 54.5
FAN20G1121 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 1758.0 1866 55.9
HPP92_025041 Vanilla planifolia HOM05D002037 ORTHO05D005261 0.0e+00 1752.6 1868 55.9
Duzib168G1462 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 1749.2 1709 59.3
DCAR_030972 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 1748.4 1874 54.6
Ca_15684_v3 Cicer arietinum L. HOM05D002037 ORTHO05D005261 0.0e+00 1711.8 1831 54.5
THA.LOC104803889 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 1698.3 1834 54.2
THA.LOC104803581 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 1677.1 1945 52.0
Zm00001eb434410 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1625.9 1839 51.2
Thhalv10024189m.g Eutrema salsugineum HOM05D002037 ORTHO05D005261 0.0e+00 1612.0 1917 49.4
Rhsim07G0173400 Rhododendron simsii HOM05D002037 ORTHO05D005261 0.0e+00 1593.9 1732 53.6
AL7G20910 Arabidopsis lyrata HOM05D002037 ORTHO05D005261 0.0e+00 1586.2 1912 49.1
Zm00001eb076460 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1571.2 1852 50.0
C07p58470 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1568.9 1885 49.0
CARHR239070 Cardamine hirsuta HOM05D002037 ORTHO05D005261 0.0e+00 1568.1 1913 48.8
BolC7t46302H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1565.1 1886 49.0
A03p60560 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1564.3 1892 48.7
BraA03t15097Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1562.0 1883 48.9
Carub.0007s0937 Capsella rubella HOM05D002037 ORTHO05D005261 0.0e+00 1560.4 1902 48.6
Aa31LG2G19150 Aethionema arabicum HOM05D002037 ORTHO05D005261 0.0e+00 1554.7 1895 49.3
BcaB03g12684 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1554.7 1904 48.4
BcaC01g01107 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1544.6 1883 48.3
A08p18770 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1541.6 1896 48.5
BraA08t33838Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1541.6 1896 48.5
C03p88150 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1540.8 1895 48.1
BolC3t21123H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1537.7 1893 48.4
AT4G31160 Arabidopsis thaliana HOM05D002037 ORTHO05D005261 0.0e+00 1532.3 1902 48.6
MBI09_g01931_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1467.2 1491 58.8
Mapoly0062s0116 Marchantia polymorpha HOM05D002037 ORTHO05D005261 0.0e+00 1458.4 1943 47.9
Pp3c1_12700 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1416.4 1874 47.2
Pp3c1_12703 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1416.4 1874 47.2
Eucgr.C00279 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 1412.9 1236 62.1
Pp3c2_24840 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1411.0 1843 47.2
Dinv37481 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1318.9 1236 60.4
unitig_26.g8827 Utricularia gibba HOM05D002037 ORTHO05D005261 0.0e+00 1281.5 1881 44.9
BcaNung01540 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1274.6 1357 53.1
Hma1.2p1_0214F.1_g090640 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1224.9 1232 57.2
Actinidia25728 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1205.7 1861 43.7
AagrBONN_evm.TU.Sc2ySwM_117.676 Anthoceros agrestis HOM05D002037 ORTHO05D005261 0.0e+00 1192.2 1780 44.0
Nitab4.5_0009273g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 0.0e+00 1116.7 1027 61.7
Sp7g29040 Schrenkiella parvula HOM05D002037 ORTHO05D005261 0.0e+00 1077.0 1505 46.2
Hma1.2p1_0319F.1_g123860 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.8e-284 983.8 934 60.8
Dinv09451 Davidia involucrata HOM05D002037 ORTHO05D005261 5.5e-281 972.2 926 58.5
CBR_g37392 Chara braunii HOM05D002037 ORTHO05D000002 1.4e-276 957.6 1663 39.0
Lj1g0010809 Lotus japonicus HOM05D002037 ORTHO05D005261 6.3e-269 932.2 1340 46.8
SEGI_24212 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 2.6e-254 883.6 796 61.9
PSO170G5891 Papaver somniferum HOM05D002037 ORTHO05D005261 1.9e-252 877.5 906 56.5
Dinv09452 Davidia involucrata HOM05D002037 ORTHO05D005261 1.2e-246 858.2 854 58.5
Migut.E01409 Erythranthe guttata HOM05D002037 ORTHO05D005261 4.9e-245 852.8 1837 34.7
Oeu057143.1 Olea europaea HOM05D002037 ORTHO05D005261 4.9e-245 852.8 1460 42.7
Nitab4.5_0003528g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 1.9e-244 850.9 774 62.1
Os04g0691200 Oryza sativa ssp. japonica HOM05D002037 ORTHO05D005261 2.1e-187 661.4 648 55.6
SEGI_28363 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 4.4e-185 653.7 654 54.0
Hma1.2p1_0214F.1_g090650 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 6.5e-173 613.2 510 62.7
Glyma.14G131100 Glycine max HOM05D002037 ORTHO05D005261 4.0e-170 604.0 709 50.4
Dinv37482 Davidia involucrata HOM05D002037 ORTHO05D005261 6.2e-147 526.9 499 57.1
SHI50541 Sapria himalayana HOM05D002037 ORTHO05D005261 1.1e-140 506.1 619 49.3
Hma1.2p1_2010F.1_g311000 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 3.6e-139 501.1 338 72.8
Hma1.2p1_1382F.1_g279390 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 3.1e-122 444.9 419 57.0
Hma1.2p1_2176F.1_g316130 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.5e-116 426.0 418 56.2
Aqoxy4G02471 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 1.2e-113 416.4 1225 29.1
SHI21131 Sapria himalayana HOM05D002037 ORTHO05D005261 5.3e-106 391.0 428 51.6
Cre17.g725450 Chlamydomonas reinhardtii HOM05D002037 ORTHO05D005261 9.4e-79 300.4 2065 22.6
FAN20G0200 Fragaria x ananassa HOM05D002037 ORTHO05D005261 4.8e-75 288.1 466 40.1
Migut.E01404 Erythranthe guttata HOM05D002037 ORTHO05D005261 9.1e-74 283.9 638 32.6
Migut.E01403 Erythranthe guttata HOM05D002037 ORTHO05D005261 2.6e-73 282.3 453 38.4
Hund03252 Selenicereus undatus HOM05D002037 ORTHO05D005261 5.2e-69 268.1 851 30.8
SEGI_07751 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 8.8e-61 240.7 451 35.0
Lj1g0019909 Lotus japonicus HOM05D002037 ORTHO05D005261 7.5e-60 237.7 161 71.4
Hma1.2p1_1382F.1_g279380 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.2e-57 230.3 224 61.6
BcaNung01541 Brassica carinata HOM05D002037 ORTHO05D005261 6.3e-51 208.0 458 33.6
Hma1.2p1_2176F.1_g316120 Hydrangea macrophylla HOM05D002037 ORTHO05D005586 8.3e-51 207.6 199 63.3
TPR.G39361 Trifolium pratense HOM05D002037 ORTHO05D005261 2.0e-36 159.8 190 46.3
TPR.G7111 Trifolium pratense HOM05D002037 ORTHO05D005261 2.2e-35 156.4 172 58.7
Gohir.D08G274833 Gossypium hirsutum HOM05D002037 ORTHO05D005261 3.1e-29 136.0 76 82.9
MD08G1134600 Malus domestica HOM05D002037 ORTHO05D005261 4.4e-12 79.0 63 60.3
Potri.006G280600 Populus trichocarpa HOM05D003201 ORTHO05D008914 4.9e-11 75.5 135 39.3
Hund03253 Selenicereus undatus HOM05D002037 ORTHO05D005261 6.4e-11 75.1 54 63.0
Nitab4.5_0000919g0010 Nicotiana tabacum HOM05D002037 ORTHO05D021575 2.4e-10 73.2 82 48.8
arahy.Tifrunner.gnm1.ann1.ME62WN Arachis hypogaea HOM05D002037 ORTHO05D005261 6.0e-09 68.6 99 46.5
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 6.0e-09 68.6 33 81.8
MBI14_g11886_MAGBIO Magnolia biondii HOM05D056533 ORTHO05D018021 1.9e-07 63.5 42 81.0
MBI05_g22526_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D018021 5.6e-07 62.0 42 78.6
MBI05_g34595_MAGBIO Magnolia biondii HOM05D003023 ORTHO05D018021 5.6e-07 62.0 42 78.6
Dinv42062 Davidia involucrata HOM05D000142 ORTHO05D000124 2.1e-06 60.1 123 36.6
MBI08_g04317_MAGBIO Magnolia biondii HOM05D000887 ORTHO05D018021 2.1e-06 60.1 54 64.8


User provided reference genes

Program Settings