Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G0902 Ceratophyllum demersum HOM05D004970 ORTHO05D005665 3.2e-30 134.4 68 100.0
CDE11G0972 Ceratophyllum demersum HOM05D004970 ORTHO05D005665 8.8e-28 126.3 68 92.6
AT1G64860 Arabidopsis thaliana HOM05D004970 ORTHO05D005665 3.1e-17 91.3 65 72.3
CARHR056270 Cardamine hirsuta HOM05D004970 ORTHO05D005665 4.1e-17 90.9 65 72.3
EL10Ac2g02539 Beta vulgaris HOM05D004970 ORTHO05D005665 5.3e-17 90.5 68 67.6
AL2G19270 Arabidopsis lyrata HOM05D004970 ORTHO05D005665 7.0e-17 90.1 65 70.8
BcaB05g23594 Brassica carinata HOM05D004970 ORTHO05D005665 7.0e-17 90.1 65 70.8
Carub.0002s0979 Capsella rubella HOM05D004970 ORTHO05D005665 7.0e-17 90.1 65 70.8
Thhalv10002486m.g Eutrema salsugineum HOM05D004970 ORTHO05D005665 7.0e-17 90.1 65 70.8
MBI04_g30791_MAGBIO Magnolia biondii HOM05D004970 ORTHO05D005665 7.0e-17 90.1 65 67.7
Sc13g0011030 Simmondsia chinensis HOM05D004970 ORTHO05D005665 7.0e-17 90.1 68 69.1
Aa31LG2G2110 Aethionema arabicum HOM05D004970 ORTHO05D005665 9.1e-17 89.7 65 70.8
ATR0568G198 Amborella trichopoda HOM05D004970 ORTHO05D005665 9.1e-17 89.7 68 64.7
Sp5g19000 Schrenkiella parvula HOM05D004970 ORTHO05D005665 9.1e-17 89.7 65 70.8
Ah.10g025760 Amaranthus hybridus HOM05D004970 ORTHO05D005665 1.2e-16 89.4 68 66.2
Manes.09G130800 Manihot esculenta HOM05D004970 ORTHO05D005665 1.2e-16 89.4 68 67.6
COL.COLO4_08410 Corchorus olitorius HOM05D004970 ORTHO05D005665 1.6e-16 89.0 65 67.7
Duzib177G0786 Durio zibethinus HOM05D004970 ORTHO05D005665 2.0e-16 88.6 65 69.2
Glyma.12G013300 Glycine max HOM05D004970 ORTHO05D005665 2.0e-16 88.6 65 70.8
CAN.G732.31 Capsicum annuum HOM05D004970 ORTHO05D005665 2.7e-16 88.2 68 67.6
Glyma.09G223600 Glycine max HOM05D004970 ORTHO05D005665 2.7e-16 88.2 65 70.8
Solyc03g097320.3 Solanum lycopersicum HOM05D004970 ORTHO05D005665 2.7e-16 88.2 68 67.6
Sopen03g028090 Solanum pennellii HOM05D004970 ORTHO05D005665 2.7e-16 88.2 68 67.6
A02p24000 Brassica napus HOM05D004970 ORTHO05D005665 3.5e-16 87.8 65 69.2
BraA02t07395Z Brassica rapa HOM05D004970 ORTHO05D005665 3.5e-16 87.8 65 69.2
Prupe.2G329700 Prunus persica HOM05D004970 ORTHO05D005665 3.5e-16 87.8 64 71.9
Atru.chr12.1813 Acer truncatum HOM05D004970 ORTHO05D005665 4.5e-16 87.4 65 69.2
BcaC03g16031 Brassica carinata HOM05D004970 ORTHO05D005665 4.5e-16 87.4 65 69.2
C02p37850 Brassica napus HOM05D004970 ORTHO05D005665 4.5e-16 87.4 65 69.2
BolC2t09801H Brassica oleracea HOM05D004970 ORTHO05D005665 4.5e-16 87.4 65 69.2
Cpa.g.sc43.154 Carica papaya HOM05D004970 ORTHO05D005665 4.5e-16 87.4 68 64.7
AUR62032380 Chenopodium quinoa HOM05D004970 ORTHO05D005665 4.5e-16 87.4 68 66.2
Lj3g0014992 Lotus japonicus HOM05D004970 ORTHO05D005665 4.5e-16 87.4 65 70.8
Oeu028991.1 Olea europaea HOM05D004970 ORTHO05D005665 4.5e-16 87.4 66 68.2
PSO782G0173 Papaver somniferum HOM05D004970 ORTHO05D005665 4.5e-16 87.4 65 67.7
Thecc.05G227300 Theobroma cacao HOM05D004970 ORTHO05D005665 4.5e-16 87.4 65 67.7
AUR62024839 Chenopodium quinoa HOM05D004970 ORTHO05D005665 5.9e-16 87.0 68 66.2
Duzib128G2026 Durio zibethinus HOM05D004970 ORTHO05D005665 5.9e-16 87.0 65 69.2
Gohir.A11G221400 Gossypium hirsutum HOM05D004970 ORTHO05D005665 5.9e-16 87.0 68 64.7
Nn1g09277 Nelumbo nucifera HOM05D004970 ORTHO05D005665 5.9e-16 87.0 68 64.7
Potri.019G043300 Populus trichocarpa HOM05D004970 ORTHO05D005665 5.9e-16 87.0 68 66.2
CANSAT21G0704 Cannabis sativa HOM05D004970 ORTHO05D005665 7.7e-16 86.7 68 64.7
Cfa016111 Carpinus fangiana HOM05D004970 ORTHO05D005665 7.7e-16 86.7 68 64.7
CDE01G0673 Ceratophyllum demersum HOM05D004970 ORTHO05D005665 7.7e-16 86.7 68 63.2
CDE12G0545 Ceratophyllum demersum HOM05D004970 ORTHO05D005665 7.7e-16 86.7 68 63.2
Ciclev10031289m.g Citrus clementina HOM05D004970 ORTHO05D005665 7.7e-16 86.7 65 67.7
Haze_00346 Corylus avellana HOM05D004970 ORTHO05D005665 7.7e-16 86.7 68 64.7
Manes.08G159000 Manihot esculenta HOM05D004970 ORTHO05D005665 7.7e-16 86.7 68 66.2
Medtr0172s0030 Medicago truncatula HOM05D004970 ORTHO05D005665 7.7e-16 86.7 63 71.4
Nitab4.5_0000645g0090 Nicotiana tabacum HOM05D004970 ORTHO05D005665 7.7e-16 86.7 68 64.7
Peaxi162Scf00516g00423 Petunia axillaris HOM05D004970 ORTHO05D005665 7.7e-16 86.7 68 66.2
PGSC0003DMG400026491 Solanum tuberosum HOM05D004970 ORTHO05D005665 7.7e-16 86.7 68 66.2
CSS0006334 Camellia sinensis var. sinensis HOM05D004970 ORTHO05D005665 1.0e-15 86.3 65 69.2
Nitab4.5_0000021g0930 Nicotiana tabacum HOM05D004970 ORTHO05D005665 1.0e-15 86.3 68 66.2
Nitab4.5_0005545g0050 Nicotiana tabacum HOM05D004970 ORTHO05D005665 1.0e-15 86.3 68 66.2
TWI32G0575 Tripterygium wilfordii HOM05D004970 ORTHO05D005665 1.0e-15 86.3 68 63.2
TAR375G0320 Trochodendron aralioides HOM05D004970 ORTHO05D005665 1.0e-15 86.3 65 67.7
VMungo1127G0435 Vigna mungo HOM05D004970 ORTHO05D005665 1.0e-15 86.3 68 67.6
CSS0041522 Camellia sinensis var. sinensis HOM05D004970 ORTHO05D005665 1.7e-15 85.5 65 69.2
Dinv17237 Davidia involucrata HOM05D004970 ORTHO05D005665 1.7e-15 85.5 68 64.7
Gohir.D11G234800 Gossypium hirsutum HOM05D004970 ORTHO05D005665 1.7e-15 85.5 65 66.2
Gorai.007G247500 Gossypium raimondii HOM05D004970 ORTHO05D005665 1.7e-15 85.5 65 66.2
THA.LOC104821684 Tarenaya hassleriana HOM05D004970 ORTHO05D005665 1.7e-15 85.5 68 63.2
Ca_00814_v3 Cicer arietinum L. HOM05D004970 ORTHO05D005665 2.2e-15 85.1 65 67.7
Cc02_g00040 Coffea canephora HOM05D004970 ORTHO05D005665 2.2e-15 85.1 65 67.7
DCAR_020435 Daucus carota HOM05D004970 ORTHO05D005665 2.2e-15 85.1 66 65.2
Nitab4.5_0002998g0010 Nicotiana tabacum HOM05D004970 ORTHO05D005665 2.2e-15 85.1 68 64.7
GSVIVG01024261001 Vitis vinifera HOM05D004970 ORTHO05D005665 2.2e-15 85.1 66 65.2
arahy.Tifrunner.gnm1.ann1.N044W1 Arachis hypogaea HOM05D004970 ORTHO05D005665 2.9e-15 84.7 68 66.2
arahy.Tifrunner.gnm1.ann1.TJCL76 Arachis hypogaea HOM05D004970 ORTHO05D005665 2.9e-15 84.7 68 66.2
Gohir.A08G221630 Gossypium hirsutum HOM05D004970 ORTHO05D005665 2.9e-15 84.7 65 69.2
Gohir.D08G239800 Gossypium hirsutum HOM05D004970 ORTHO05D005665 2.9e-15 84.7 65 69.2
Gorai.004G255000 Gossypium raimondii HOM05D004970 ORTHO05D005665 2.9e-15 84.7 65 69.2
Psat7g161560 Pisum sativum HOM05D004970 ORTHO05D005665 2.9e-15 84.7 68 64.7
TWI60G0079 Tripterygium wilfordii HOM05D004970 ORTHO05D005665 2.9e-15 84.7 68 61.8
CAN.G65.124 Capsicum annuum HOM05D004970 ORTHO05D005665 5.0e-15 84.0 68 63.2
CiPaw.05G210700 Carya illinoinensis HOM05D004970 ORTHO05D005665 5.0e-15 84.0 68 64.7
Lj3C883T3 Lonicera japonica HOM05D004970 ORTHO05D005665 5.0e-15 84.0 65 66.2
Phvul.011G016400 Phaseolus vulgaris HOM05D004970 ORTHO05D005665 5.0e-15 84.0 65 67.7
PSO063G5802 Papaver somniferum HOM05D004970 ORTHO05D005665 6.5e-15 83.6 65 66.2
Potri.013G075400 Populus trichocarpa HOM05D004970 ORTHO05D005665 6.5e-15 83.6 68 63.2
Sabra19G0054000 Salix brachista HOM05D004970 ORTHO05D005665 6.5e-15 83.6 65 66.2
HPP92_022744 Vanilla planifolia HOM05D004970 ORTHO05D005665 6.5e-15 83.6 62 61.3
Actinidia24515 Actinidia chinensis HOM05D004970 ORTHO05D005665 8.5e-15 83.2 63 66.7
Aqoxy3G01903 Aquilegia oxysepala HOM05D004970 ORTHO05D005665 8.5e-15 83.2 65 63.1
Peaxi162Scf00815g00348 Petunia axillaris HOM05D004970 ORTHO05D005665 8.5e-15 83.2 68 63.2
Sopen06g029080 Solanum pennellii HOM05D004970 ORTHO05D005665 8.5e-15 83.2 68 61.8
Ca_13824_v3 Cicer arietinum L. HOM05D004970 ORTHO05D005665 1.1e-14 82.8 65 66.2
PGSC0003DMG400027038 Solanum tuberosum HOM05D004970 ORTHO05D005665 1.1e-14 82.8 68 60.3
CiPaw.06G037800 Carya illinoinensis HOM05D004970 ORTHO05D005665 1.5e-14 82.4 68 61.8
Lsat_1_v5_gn_9_50600 Lactuca sativa HOM05D004970 ORTHO05D005665 1.5e-14 82.4 68 64.7
Lalb_Chr01g0000711 Lupinus albus HOM05D004970 ORTHO05D005665 1.5e-14 82.4 62 69.4
MD07G1311500 Malus domestica HOM05D004970 ORTHO05D005665 1.5e-14 82.4 64 67.2
HanXRQChr08g0223061 Helianthus annuus HOM05D004970 ORTHO05D005665 1.9e-14 82.0 68 63.2
Lsat_1_v5_gn_8_14040 Lactuca sativa HOM05D004970 ORTHO05D005665 1.9e-14 82.0 68 63.2
CsaV3_2G035830 Cucumis sativus L. HOM05D004970 ORTHO05D005665 2.5e-14 81.6 68 61.8
SGA_v2.0_scaffold18G08209 Striga asiatica HOM05D004970 ORTHO05D005665 2.5e-14 81.6 65 64.6
ClCG02G007910 Citrullus lanatus HOM05D004970 ORTHO05D005665 3.2e-14 81.3 65 64.6
FvH4_7g34280 Fragaria vesca HOM05D004970 ORTHO05D005665 3.2e-14 81.3 64 65.6
FAN01G0343 Fragaria x ananassa HOM05D004970 ORTHO05D005665 3.2e-14 81.3 64 65.6
FAN03G2928 Fragaria x ananassa HOM05D004970 ORTHO05D005665 3.2e-14 81.3 64 65.6
Os08g0163400 Oryza sativa ssp. japonica HOM05D004970 ORTHO05D005665 3.2e-14 81.3 64 57.8
SalBow1G3212 Salvia bowleyana HOM05D004970 ORTHO05D005665 3.2e-14 81.3 65 66.2
CSS0017291 Camellia sinensis var. sinensis HOM05D004970 ORTHO05D005665 4.2e-14 80.9 65 66.2
MELO3C024760.2 Cucumis melo HOM05D004970 ORTHO05D005665 4.2e-14 80.9 68 60.3
MD01G1240100 Malus domestica HOM05D004970 ORTHO05D005665 5.5e-14 80.5 61 67.2
Solyc06g072710.3 Solanum lycopersicum HOM05D004970 ORTHO05D005665 5.5e-14 80.5 61 65.6
FAN10G0750 Fragaria x ananassa HOM05D004970 ORTHO05D005665 7.2e-14 80.1 64 64.1
ECA233G0740 Erigeron canadensis HOM05D004970 ORTHO05D005665 9.4e-14 79.7 68 60.3
Migut.H00003 Erythranthe guttata HOM05D004970 ORTHO05D005665 9.4e-14 79.7 65 63.1
Sed0000344 Sechium edule HOM05D004970 ORTHO05D005665 9.4e-14 79.7 65 63.1
TPR.G20254 Trifolium pratense HOM05D004970 ORTHO05D005665 9.4e-14 79.7 61 65.6
unitig_0.g2401 Utricularia gibba HOM05D002300 ORTHO05D002340 9.4e-14 79.7 61 65.6
HanXRQChr05g0144361 Helianthus annuus HOM05D004970 ORTHO05D005665 1.2e-13 79.3 68 60.3
MSTRG.26919 Avicennia marina HOM05D004970 ORTHO05D005665 1.6e-13 79.0 63 65.1
RcHm_v2.0_Chr1g0384631 Rosa chinensis HOM05D004970 ORTHO05D005665 1.6e-13 79.0 61 65.6
Sed0007466 Sechium edule HOM05D004970 ORTHO05D005665 1.6e-13 79.0 68 60.3
unitig_52.g17686 Utricularia gibba HOM05D004970 ORTHO05D005665 1.6e-13 79.0 61 63.9
Lalb_Chr19g0140121 Lupinus albus HOM05D004970 ORTHO05D005665 2.1e-13 78.6 62 66.1
Zm00001eb415360 Zea mays HOM05D004970 ORTHO05D005665 2.1e-13 78.6 64 56.2
HanXRQChr15g0485731 Helianthus annuus HOM05D004970 ORTHO05D005665 2.7e-13 78.2 63 66.7
vmacro06358 Vaccinium macrocarpon HOM05D004970 ORTHO05D005665 3.6e-13 77.8 62 66.1
Zm00001eb172090 Zea mays HOM05D004970 ORTHO05D005665 4.7e-13 77.4 64 54.7
MSTRG.8566 Avicennia marina HOM05D004970 ORTHO05D005665 1.0e-12 76.3 71 59.2
ECA238G3380 Erigeron canadensis HOM05D004970 ORTHO05D005665 1.0e-12 76.3 65 61.5
Lsat_1_v5_gn_2_127081 Lactuca sativa HOM05D004970 ORTHO05D005665 1.0e-12 76.3 65 61.5
HanXRQChr14g0461121 Helianthus annuus HOM05D004970 ORTHO05D005665 3.0e-12 74.7 62 62.9
Sabra13G0064900 Salix brachista HOM05D004970 ORTHO05D005665 8.8e-12 73.2 92 47.8
ECA232G1337 Erigeron canadensis HOM05D004970 ORTHO05D005665 1.5e-11 72.4 65 58.5
SEGI_26324 Sequoiadendron giganteum HOM05D004970 ORTHO05D005665 8.3e-10 66.6 61 52.5
SEGI_32403 Sequoiadendron giganteum HOM05D004970 ORTHO05D005665 8.3e-10 66.6 61 52.5
Peaxi162Scf00815g00359 Petunia axillaris HOM05D004970 ORTHO05D009229 2.0e-08 62.0 54 57.4
SEGI_09576 Sequoiadendron giganteum HOM05D004970 ORTHO05D005665 1.0e-07 59.7 61 47.5


User provided reference genes

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