Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G0763 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 1.2e-294 1015.8 496 100.0
MBI02_g25367_MAGBIO Magnolia biondii HOM05D004256 ORTHO05D005224 4.3e-124 449.1 593 43.7
TAR627G0580 Trochodendron aralioides HOM05D004256 ORTHO05D005224 1.9e-116 423.7 596 42.6
COL.COLO4_26853 Corchorus olitorius HOM05D004256 ORTHO05D005224 2.4e-114 416.8 593 41.3
Dinv11058 Davidia involucrata HOM05D004256 ORTHO05D005224 9.0e-114 414.8 607 42.7
Atru.chr10.795 Acer truncatum HOM05D004256 ORTHO05D005224 2.0e-113 413.7 604 41.1
PSO675G2772 Papaver somniferum HOM05D004256 ORTHO05D005224 2.6e-113 413.3 594 41.8
Gohir.A06G119600 Gossypium hirsutum HOM05D004256 ORTHO05D005224 1.3e-112 411.0 595 41.3
ATR1098G117 Amborella trichopoda HOM05D004256 ORTHO05D005224 9.3e-111 404.8 567 40.7
CiPaw.09G142400 Carya illinoinensis HOM05D004256 ORTHO05D005224 9.3e-111 404.8 607 41.8
Lj1A1161T63 Lonicera japonica HOM05D004256 ORTHO05D005224 1.2e-110 404.4 547 43.9
Nitab4.5_0001583g0180 Nicotiana tabacum HOM05D004256 ORTHO05D005224 1.2e-110 404.4 550 43.3
Zm00001eb161380 Zea mays HOM05D004256 ORTHO05D005224 1.2e-110 404.4 501 44.7
Aqoxy5G02462 Aquilegia oxysepala HOM05D004256 ORTHO05D005224 1.6e-110 404.1 598 40.5
QL05p062735 Quercus lobata HOM05D004256 ORTHO05D005224 1.3e-109 401.0 591 41.3
Duzib192G0446 Durio zibethinus HOM05D004256 ORTHO05D005224 2.3e-109 400.2 595 40.7
Potri.001G465500 Populus trichocarpa HOM05D004256 ORTHO05D005224 2.3e-109 400.2 590 40.5
Sabra16G0315900 Salix brachista HOM05D004256 ORTHO05D005224 2.3e-109 400.2 590 40.8
Thecc.06G004200 Theobroma cacao HOM05D004256 ORTHO05D005224 3.9e-109 399.4 594 40.2
Cfa004790 Carpinus fangiana HOM05D004256 ORTHO05D005224 5.1e-109 399.1 608 42.4
Gorai.010G144100 Gossypium raimondii HOM05D004256 ORTHO05D005224 9.1e-106 388.3 562 41.8
GSVIVG01021670001 Vitis vinifera HOM05D004256 ORTHO05D005224 1.2e-105 387.9 588 40.6
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.5e-105 387.5 568 41.5
CANSAT35G1931 Cannabis sativa HOM05D004256 ORTHO05D005224 1.5e-105 387.5 585 40.5
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 2.0e-105 387.1 568 41.5
Ciclev10014179m.g Citrus clementina HOM05D004256 ORTHO05D005224 2.0e-105 387.1 586 40.1
ClCG03G008210 Citrullus lanatus HOM05D004256 ORTHO05D005224 3.4e-105 386.3 589 39.2
Rhsim02G0162800 Rhododendron simsii HOM05D004256 ORTHO05D005224 3.4e-105 386.3 596 39.6
Prupe.4G091400 Prunus persica HOM05D004256 ORTHO05D005224 4.5e-105 386.0 594 40.7
Nitab4.5_0001225g0210 Nicotiana tabacum HOM05D004256 ORTHO05D005224 7.7e-105 385.2 601 39.4
Nn2g15522 Nelumbo nucifera HOM05D004256 ORTHO05D005224 1.0e-104 384.8 555 41.4
Sopen02g019190 Solanum pennellii HOM05D004256 ORTHO05D005224 1.3e-104 384.4 586 40.1
MELO3C002826.2 Cucumis melo HOM05D004256 ORTHO05D005224 2.2e-104 383.6 594 39.1
Zm00001eb300700 Zea mays HOM05D004256 ORTHO05D005224 2.9e-104 383.3 583 40.1
RcHm_v2.0_Chr5g0016471 Rosa chinensis HOM05D004256 ORTHO05D005224 5.0e-104 382.5 604 38.6
MD05G1271600 Malus domestica HOM05D004256 ORTHO05D005224 1.1e-103 381.3 593 40.3
SalBow7G4118 Salvia bowleyana HOM05D004256 ORTHO05D005224 3.2e-103 379.8 583 39.5
Eucgr.K01946 Eucalyptus grandis HOM05D004256 ORTHO05D005224 5.5e-103 379.0 596 38.3
HPP92_009410 Vanilla planifolia HOM05D004256 ORTHO05D005224 5.5e-103 379.0 588 40.5
Solyc02g070030.4 Solanum lycopersicum HOM05D004256 ORTHO05D005224 2.1e-102 377.1 586 39.6
MD10G1252200 Malus domestica HOM05D004256 ORTHO05D005224 2.7e-102 376.7 596 40.3
arahy.Tifrunner.gnm1.ann1.71MGM7 Arachis hypogaea HOM05D004256 ORTHO05D005224 3.6e-102 376.3 592 39.2
Manes.06G068000 Manihot esculenta HOM05D004256 ORTHO05D005224 3.6e-102 376.3 602 38.0
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 1.0e-101 374.8 592 39.2
FvH4_3g10230 Fragaria vesca HOM05D004256 ORTHO05D005224 1.4e-101 374.4 598 38.5
TWI63G0578 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 1.8e-101 374.0 589 39.2
CsaV3_1G037200 Cucumis sativus L. HOM05D004256 ORTHO05D005224 2.3e-101 373.6 595 38.8
CAN.G79.16 Capsicum annuum HOM05D004256 ORTHO05D005224 3.0e-101 373.2 599 39.2
Lj4g0013937 Lotus japonicus HOM05D004256 ORTHO05D005224 3.9e-101 372.9 590 38.5
Os07g0164000 Oryza sativa ssp. japonica HOM05D004256 ORTHO05D005224 5.1e-101 372.5 580 39.8
HanXRQChr04g0117221 Helianthus annuus HOM05D004256 ORTHO05D005224 8.8e-101 371.7 577 38.1
Migut.H01323 Erythranthe guttata HOM05D004256 ORTHO05D005224 1.5e-100 370.9 578 38.9
TPR.G30378 Trifolium pratense HOM05D004256 ORTHO05D005224 2.0e-100 370.5 588 38.4
FAN16G0878 Fragaria x ananassa HOM05D004256 ORTHO05D005224 7.4e-100 368.6 614 38.3
Peaxi162Scf00670g00215 Petunia axillaris HOM05D004256 ORTHO05D005224 1.3e-99 367.9 603 39.5
FAN21G3884 Fragaria x ananassa HOM05D004256 ORTHO05D005224 2.2e-99 367.1 599 38.6
TWI38G1119 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 2.8e-99 366.7 586 38.9
Ca_18290_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 4.8e-99 365.9 607 37.9
DCAR_003847 Daucus carota HOM05D004256 ORTHO05D005224 4.8e-99 365.9 612 38.2
Oeu014331.2 Olea europaea HOM05D004256 ORTHO05D005224 1.8e-98 364.0 582 38.3
Ah.14g086130 Amaranthus hybridus HOM05D004256 ORTHO05D005224 2.4e-98 363.6 608 38.3
PGR031G3593 Punica granatum HOM05D004256 ORTHO05D005224 6.9e-98 362.1 591 40.3
Cc09_g07800 Coffea canephora HOM05D004256 ORTHO05D005224 9.1e-98 361.7 595 38.0
Glyma.05G126600 Glycine max HOM05D004256 ORTHO05D005224 1.2e-97 361.3 592 38.5
Lsat_1_v5_gn_7_34341 Lactuca sativa HOM05D004256 ORTHO05D005224 2.0e-97 360.5 583 37.2
ECA236G4703 Erigeron canadensis HOM05D004256 ORTHO05D005224 5.9e-97 359.0 577 36.9
Phvul.002G198200 Phaseolus vulgaris HOM05D004256 ORTHO05D005224 5.9e-97 359.0 590 37.1
Medtr4g094545 Medicago truncatula HOM05D004256 ORTHO05D005224 1.7e-96 357.5 595 38.2
EL10Ac8g19544 Beta vulgaris HOM05D004256 ORTHO05D005224 8.5e-96 355.1 607 37.2
Glyma.08G081600 Glycine max HOM05D004256 ORTHO05D005224 7.2e-95 352.1 591 37.4
FAN11G3535 Fragaria x ananassa HOM05D004256 ORTHO05D005224 2.3e-93 347.1 660 35.2
THA.LOC104812246 Tarenaya hassleriana HOM05D004256 ORTHO05D005224 3.9e-93 346.3 576 37.3
Psat7g093560 Pisum sativum HOM05D004256 ORTHO05D005224 1.8e-90 337.4 634 35.2
Lalb_Chr13g0291451 Lupinus albus HOM05D004256 ORTHO05D005224 2.4e-90 337.0 590 36.1
Lalb_Chr12g0208801 Lupinus albus HOM05D004256 ORTHO05D005224 3.1e-90 336.7 590 35.8
SGA_v2.0_scaffold106G30680 Striga asiatica HOM05D004256 ORTHO05D005224 5.3e-90 335.9 587 36.1
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 7.0e-90 335.5 597 35.5
Aa31LG6G2980 Aethionema arabicum HOM05D004256 ORTHO05D005224 7.2e-87 325.5 579 36.6
Sp7g19000 Schrenkiella parvula HOM05D004256 ORTHO05D005224 4.4e-84 316.2 587 35.1
A01p12320 Brassica napus HOM05D004256 ORTHO05D005224 1.3e-83 314.7 595 35.0
AL7G33240 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 8.2e-83 312.0 602 35.0
Cpa.g.sc166.41 Carica papaya HOM05D004256 ORTHO05D007693 8.2e-83 312.0 440 41.8
C01p14740 Brassica napus HOM05D004256 ORTHO05D005224 2.7e-81 307.0 602 34.2
BolC1t01426H Brassica oleracea HOM05D004256 ORTHO05D005224 2.7e-81 307.0 602 34.2
BolC1t01428H Brassica oleracea HOM05D004256 ORTHO05D005224 4.5e-81 306.2 598 35.6
Carub.0007s2051 Capsella rubella HOM05D004256 ORTHO05D005224 8.5e-80 302.0 577 34.5
BraA01t01178Z Brassica rapa HOM05D004256 ORTHO05D005224 1.5e-79 301.2 596 34.1
Thhalv10024326m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 3.2e-79 300.1 604 33.4
Carub.0007s2052 Capsella rubella HOM05D004256 ORTHO05D005224 4.2e-79 299.7 599 35.1
BcaC09g51291 Brassica carinata HOM05D004256 ORTHO05D005224 7.2e-79 298.9 597 34.8
C01p14750 Brassica napus HOM05D004256 ORTHO05D005224 7.2e-79 298.9 597 34.8
BraA01t01176Z Brassica rapa HOM05D004256 ORTHO05D005224 7.2e-79 298.9 626 33.1
Thhalv10024347m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 1.8e-77 294.3 587 34.1
CARHR227470 Cardamine hirsuta HOM05D004256 ORTHO05D005224 4.0e-77 293.1 600 34.0
AT4G20910 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 8.8e-77 292.0 600 34.8
BcaB03g11710 Brassica carinata HOM05D004256 ORTHO05D005224 1.3e-75 288.1 659 32.9
AL7G33230 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 2.8e-75 287.0 566 33.9
Oeu021898.3 Olea europaea HOM05D004256 ORTHO05D005224 1.7e-72 277.7 510 37.1
unitig_0.g923 Utricularia gibba HOM05D004256 ORTHO05D005224 4.0e-69 266.5 387 41.9
Gohir.D06G123900 Gossypium hirsutum HOM05D004256 ORTHO05D005224 1.1e-63 248.4 403 38.7
Hma1.2p1_2369F.1_g320760 Hydrangea macrophylla HOM05D004256 ORTHO05D005224 4.3e-63 246.5 401 40.4
Potri.011G163600 Populus trichocarpa HOM05D004256 ORTHO05D005224 7.3e-63 245.7 410 38.5
AagrBONN_evm.TU.Sc2ySwM_117.1656 Anthoceros agrestis HOM05D004256 ORTHO05D005224 1.5e-60 238.0 590 31.5
Eucgr.L00874 Eucalyptus grandis HOM05D004256 ORTHO05D005224 1.8e-58 231.1 404 35.4
SMO165G0118 Selaginella moellendorffii HOM05D004256 ORTHO05D005224 1.8e-58 231.1 585 30.4
Mapoly0004s0071 Marchantia polymorpha HOM05D004256 ORTHO05D005224 3.2e-58 230.3 607 29.2
Sc17g0004580 Simmondsia chinensis HOM05D004256 ORTHO05D005224 1.5e-52 211.5 243 47.7
Actinidia31383 Actinidia chinensis HOM05D004256 ORTHO05D005224 7.5e-52 209.1 235 49.8
Pp3c1_60 Physcomitrium patens HOM05D004256 ORTHO05D005224 1.7e-51 208.0 595 29.4
Dinv16824 Davidia involucrata HOM05D010983 ORTHO05D005224 1.7e-48 198.0 172 55.8
FAN08G3148 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.5e-47 194.9 295 41.4
Sed0001829 Sechium edule HOM05D004256 ORTHO05D005224 4.3e-47 193.4 334 34.4
FAN18G3233 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.2e-46 191.8 462 30.7
Sc17g0004590 Simmondsia chinensis HOM05D004256 ORTHO05D005224 2.8e-46 190.7 318 35.8
Actinidia31384 Actinidia chinensis HOM05D004256 ORTHO05D005224 8.1e-46 189.1 295 38.3
Dinv16826 Davidia involucrata HOM05D004256 ORTHO05D005224 5.4e-42 176.4 395 32.4
FAN13G2402 Fragaria x ananassa HOM05D004256 ORTHO05D005224 2.3e-40 171.0 394 32.0
FAN18G2742 Fragaria x ananassa HOM05D004256 ORTHO05D005224 3.9e-40 170.2 457 27.6
Zm00001eb318270 Zea mays HOM05D004256 ORTHO05D005224 3.9e-40 170.2 301 35.5
AUR62034030 Chenopodium quinoa HOM05D004256 ORTHO05D005224 3.6e-38 163.7 301 33.2
BcaC09g51294 Brassica carinata HOM05D004256 ORTHO05D005224 1.4e-37 161.8 138 58.0
AUR62043099 Chenopodium quinoa HOM05D004256 ORTHO05D005224 1.8e-37 161.4 302 33.1
AT4G20920 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 5.2e-37 159.8 403 29.5
CARHR227480 Cardamine hirsuta HOM05D004256 ORTHO05D005224 5.8e-36 156.4 392 31.1
Sp7g19005 Schrenkiella parvula HOM05D004256 ORTHO05D005224 1.0e-32 145.6 336 31.8
SEGI_28315 Sequoiadendron giganteum HOM05D004256 ORTHO05D005224 3.0e-32 144.1 174 45.4
BraA01t01177Z Brassica rapa HOM05D004256 ORTHO05D005224 9.6e-31 139.0 319 32.0
BcaC09g51292 Brassica carinata HOM05D004256 ORTHO05D005224 1.6e-30 138.3 333 32.4
Haze_10386 Corylus avellana HOM05D004256 ORTHO05D005224 1.9e-26 124.8 184 42.9
Haze_10384 Corylus avellana HOM05D004256 ORTHO05D005224 9.3e-26 122.5 184 41.3
CAN.G79.20 Capsicum annuum HOM05D004256 ORTHO05D005224 8.7e-24 115.9 125 47.2
FAN08G1809 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.2e-20 105.5 161 34.8
Zm00001eb357190 Zea mays HOM05D004256 ORTHO05D005224 1.7e-19 101.7 217 30.0
CBR_g29910 Chara braunii HOM05D000019 ORTHO05D005224 2.7e-17 94.4 856 20.6
Haze_10382 Corylus avellana HOM05D004256 ORTHO05D005224 3.5e-17 94.0 214 33.2
FAN04G0519 Fragaria x ananassa HOM05D004256 ORTHO05D005224 2.4e-13 81.3 136 30.9
HanXRQChr04g0117231 Helianthus annuus HOM05D004256 ORTHO05D005224 1.7e-11 75.1 56 55.4
Actinidia33023 Actinidia chinensis HOM05D004256 ORTHO05D005224 2.9e-11 74.3 84 51.2
SEGI_09964 Sequoiadendron giganteum HOM05D000070 ORTHO05D005224 7.9e-09 66.2 66 47.0
Zm00001eb318280 Zea mays HOM05D004256 ORTHO05D005224 5.1e-08 63.5 40 75.0
Cre03.g191200 Chlamydomonas reinhardtii HOM05D004256 ORTHO05D005224 2.8e-06 57.8 130 26.9
Ca_18291_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 3.7e-06 57.4 41 68.3


User provided reference genes

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