Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G0342 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 6.4e-165 583.9 282 100.0
CDE02G2354 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 1.9e-124 449.5 278 79.1
TAR546G0001 Trochodendron aralioides HOM05D004558 ORTHO05D005647 3.5e-123 445.3 276 78.6
MBI13_g30268_MAGBIO Magnolia biondii HOM05D004558 ORTHO05D005647 4.6e-123 444.9 279 77.4
Thecc.05G130200 Theobroma cacao HOM05D004558 ORTHO05D005647 7.9e-123 444.1 277 79.4
TAR369G0680 Trochodendron aralioides HOM05D004558 ORTHO05D005647 5.1e-122 441.4 275 77.8
Cfa019915 Carpinus fangiana HOM05D004558 ORTHO05D005647 6.7e-122 441.0 282 77.7
Haze_20335 Corylus avellana HOM05D004558 ORTHO05D005647 5.7e-121 438.0 282 77.3
Aqoxy2G00035_Aqoxy2G00036 Aquilegia oxysepala HOM05D004558 ORTHO05D005647 7.4e-121 437.6 281 76.5
Duzib093G1273 Durio zibethinus HOM05D004558 ORTHO05D005647 9.7e-121 437.2 280 77.5
QL07p015188 Quercus lobata HOM05D004558 ORTHO05D005647 1.6e-120 436.4 285 76.1
CiPaw.09G162600 Carya illinoinensis HOM05D004558 ORTHO05D005647 2.2e-120 436.0 279 78.1
Duzib128G1152 Durio zibethinus HOM05D004558 ORTHO05D005647 2.2e-120 436.0 276 77.5
TWI53G2040 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 2.2e-120 436.0 282 77.3
arahy.Tifrunner.gnm1.ann1.VDKY5W Arachis hypogaea HOM05D004558 ORTHO05D005647 3.7e-120 435.3 285 76.5
arahy.Tifrunner.gnm1.ann1.XE2WF0 Arachis hypogaea HOM05D004558 ORTHO05D005647 1.4e-119 433.3 287 75.6
Gohir.A01G192400 Gossypium hirsutum HOM05D004558 ORTHO05D005647 1.4e-119 433.3 281 76.9
TWI77G0093 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 1.4e-119 433.3 282 75.9
AUR62018443 Chenopodium quinoa HOM05D004558 ORTHO05D005647 1.8e-119 433.0 279 76.7
THA.LOC104803235 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 1.8e-119 433.0 281 75.4
TPR.G23197 Trifolium pratense HOM05D004558 ORTHO05D005647 2.4e-119 432.6 281 77.2
AUR62020990 Chenopodium quinoa HOM05D004558 ORTHO05D005647 3.1e-119 432.2 277 77.3
Os01g0279100 Oryza sativa ssp. japonica HOM05D004558 ORTHO05D005647 4.1e-119 431.8 280 76.1
Carub.0005s2368 Capsella rubella HOM05D004558 ORTHO05D005647 5.3e-119 431.4 285 76.1
Sabra16G0030900 Salix brachista HOM05D004558 ORTHO05D005647 5.3e-119 431.4 282 76.2
Cpa.g.sc92.57 Carica papaya HOM05D004558 ORTHO05D005647 6.9e-119 431.0 284 76.1
Ciclev10011842m.g Citrus clementina HOM05D004558 ORTHO05D005647 9.0e-119 430.6 292 74.7
Lj1g0019045 Lotus japonicus HOM05D004558 ORTHO05D005647 9.0e-119 430.6 278 77.0
Nitab4.5_0000123g0170 Nicotiana tabacum HOM05D004558 ORTHO05D005647 9.0e-119 430.6 280 77.1
Eucgr.A02177 Eucalyptus grandis HOM05D004558 ORTHO05D005647 1.2e-118 430.3 282 76.2
Thhalv10006009m.g Eutrema salsugineum HOM05D004558 ORTHO05D005647 1.2e-118 430.3 287 75.3
THA.LOC104824384 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 1.2e-118 430.3 283 75.3
Aa31LG10G11840 Aethionema arabicum HOM05D004558 ORTHO05D005647 2.0e-118 429.5 281 76.2
Phvul.001G108700 Phaseolus vulgaris HOM05D004558 ORTHO05D005647 2.0e-118 429.5 281 76.2
Zm00001eb129000 Zea mays HOM05D004558 ORTHO05D005647 2.0e-118 429.5 278 76.3
PSO384G3158 Papaver somniferum HOM05D004558 ORTHO05D005647 2.6e-118 429.1 277 76.5
GSVIVG01025841001 Vitis vinifera HOM05D004558 ORTHO05D005647 2.6e-118 429.1 246 84.1
Sc19g0007850 Simmondsia chinensis HOM05D004558 ORTHO05D005647 3.4e-118 428.7 277 75.5
BcaC08g44811 Brassica carinata HOM05D004558 ORTHO05D005647 4.5e-118 428.3 285 75.8
A07p23140 Brassica napus HOM05D004558 ORTHO05D005647 4.5e-118 428.3 285 75.8
C06p23840 Brassica napus HOM05D004558 ORTHO05D005647 4.5e-118 428.3 293 74.1
BolC6t37555H Brassica oleracea HOM05D004558 ORTHO05D005647 4.5e-118 428.3 285 75.8
BraA07t29976Z Brassica rapa HOM05D004558 ORTHO05D005647 4.5e-118 428.3 285 75.8
DCAR_016944 Daucus carota HOM05D004558 ORTHO05D005647 4.5e-118 428.3 280 77.1
Nitab4.5_0001270g0120 Nicotiana tabacum HOM05D004558 ORTHO05D005647 5.9e-118 427.9 280 76.8
Potri.016G025000 Populus trichocarpa HOM05D004558 ORTHO05D005647 5.9e-118 427.9 282 76.2
BcaB02g07634 Brassica carinata HOM05D004558 ORTHO05D005647 7.7e-118 427.6 287 74.9
MELO3C026802.2 Cucumis melo HOM05D004558 ORTHO05D005647 7.7e-118 427.6 296 74.7
Lalb_Chr14g0365301 Lupinus albus HOM05D004558 ORTHO05D005647 7.7e-118 427.6 281 74.7
PSO339G0825 Papaver somniferum HOM05D004558 ORTHO05D005647 7.7e-118 427.6 280 75.4
Potri.006G027300 Populus trichocarpa HOM05D004558 ORTHO05D005647 7.7e-118 427.6 282 75.5
PGR042G2423 Punica granatum HOM05D004558 ORTHO05D005647 7.7e-118 427.6 283 75.3
BcaC07g40105 Brassica carinata HOM05D004558 ORTHO05D005647 1.0e-117 427.2 285 75.4
ClCG04G004930 Citrullus lanatus HOM05D004558 ORTHO05D005647 1.0e-117 427.2 282 76.2
Cc06_g22740 Coffea canephora HOM05D004558 ORTHO05D005647 1.0e-117 427.2 297 72.1
SGA_v2.0_scaffold66G22316 Striga asiatica HOM05D004558 ORTHO05D005647 1.0e-117 427.2 281 75.1
CsaV3_4G031720 Cucumis sativus L. HOM05D004558 ORTHO05D005647 1.3e-117 426.8 282 76.6
FAN23G1063 Fragaria x ananassa HOM05D004558 ORTHO05D005647 1.3e-117 426.8 276 77.2
FAN26G0634 Fragaria x ananassa HOM05D004558 ORTHO05D005647 1.3e-117 426.8 276 77.2
FAN28G2842 Fragaria x ananassa HOM05D004558 ORTHO05D005647 1.3e-117 426.8 276 77.2
A09p49810 Brassica napus HOM05D004558 ORTHO05D005647 1.7e-117 426.4 287 75.3
BraA09t40434Z Brassica rapa HOM05D004558 ORTHO05D005647 1.7e-117 426.4 287 75.3
CAN.G959.37 Capsicum annuum HOM05D004558 ORTHO05D005647 1.7e-117 426.4 276 76.4
Manes.09G073800 Manihot esculenta HOM05D004558 ORTHO05D005647 1.7e-117 426.4 278 75.9
Gorai.002G225700 Gossypium raimondii HOM05D004558 ORTHO05D005647 2.2e-117 426.0 281 75.8
Zm00001eb332650 Zea mays HOM05D004558 ORTHO05D005647 2.2e-117 426.0 281 75.1
Sabra06G0020200 Salix brachista HOM05D004558 ORTHO05D005647 2.9e-117 425.6 281 73.7
BcaC07g40007 Brassica carinata HOM05D004558 ORTHO05D005647 3.8e-117 425.2 285 74.7
ECA247G1747 Erigeron canadensis HOM05D004558 ORTHO05D005647 3.8e-117 425.2 285 75.4
unitig_37.g12773 Utricularia gibba HOM05D004558 ORTHO05D005647 3.8e-117 425.2 279 76.0
VMungo1383G3341 Vigna mungo HOM05D004558 ORTHO05D005647 3.8e-117 425.2 277 76.5
ATR1096G103 Amborella trichopoda HOM05D004558 ORTHO05D005647 5.0e-117 424.9 278 75.5
Ca_08344_v3 Cicer arietinum L. HOM05D004558 ORTHO05D005647 5.0e-117 424.9 280 75.4
DCAR_013513 Daucus carota HOM05D004558 ORTHO05D005647 5.0e-117 424.9 278 75.5
CARHR167090 Cardamine hirsuta HOM05D004558 ORTHO05D005647 6.5e-117 424.5 285 74.4
Gohir.D01G177500 Gossypium hirsutum HOM05D004558 ORTHO05D005647 1.1e-116 423.7 281 75.4
Lsat_1_v5_gn_9_30221 Lactuca sativa HOM05D004558 ORTHO05D005647 1.1e-116 423.7 286 73.8
Psat3g082520 Pisum sativum HOM05D004558 ORTHO05D005647 1.1e-116 423.7 280 75.0
Prupe.7G022500 Prunus persica HOM05D004558 ORTHO05D005647 1.1e-116 423.7 261 79.7
FvH4_1g28960 Fragaria vesca HOM05D004558 ORTHO05D005647 1.4e-116 423.3 277 76.9
FAN19G1019 Fragaria x ananassa HOM05D004558 ORTHO05D005647 1.4e-116 423.3 277 76.9
Actinidia38207 Actinidia chinensis HOM05D004558 ORTHO05D005647 1.9e-116 422.9 232 86.6
Hund24509 Selenicereus undatus HOM05D004558 ORTHO05D005647 1.9e-116 422.9 283 74.6
Migut.K00174 Erythranthe guttata HOM05D004558 ORTHO05D005647 2.5e-116 422.5 280 73.9
HPP92_000696 Vanilla planifolia HOM05D004558 ORTHO05D005647 3.2e-116 422.2 277 75.8
Actinidia00883 Actinidia chinensis HOM05D004558 ORTHO05D005647 4.2e-116 421.8 232 86.2
MSTRG.6287 Avicennia marina HOM05D004558 ORTHO05D005647 4.2e-116 421.8 282 73.8
Sed0025713 Sechium edule HOM05D004558 ORTHO05D005647 5.5e-116 421.4 283 74.2
HPP92_000650 Vanilla planifolia HOM05D004558 ORTHO05D005647 5.5e-116 421.4 247 82.2
Glyma.19G123800 Glycine max HOM05D004558 ORTHO05D005647 7.2e-116 421.0 285 74.7
Glyma.03G119500 Glycine max HOM05D004558 ORTHO05D005647 9.4e-116 420.6 265 77.7
Lalb_Chr24g0400681 Lupinus albus HOM05D004558 ORTHO05D005647 9.4e-116 420.6 281 73.7
Sopen10g028720 Solanum pennellii HOM05D004558 ORTHO05D005647 9.4e-116 420.6 280 74.6
Oeu060750.2 Olea europaea HOM05D004558 ORTHO05D005647 1.2e-115 420.2 293 73.4
Sp5g05650 Schrenkiella parvula HOM05D004558 ORTHO05D005647 1.2e-115 420.2 257 79.8
Medtr7g088340 Medicago truncatula HOM05D004558 ORTHO05D005647 1.6e-115 419.9 279 75.3
PGSC0003DMG400007188 Solanum tuberosum HOM05D004558 ORTHO05D005647 2.1e-115 419.5 280 74.3
Solyc10g077040.2 Solanum lycopersicum HOM05D004558 ORTHO05D005647 2.7e-115 419.1 280 74.3
AL5G38370 Arabidopsis lyrata HOM05D004558 ORTHO05D005647 4.6e-115 418.3 232 85.8
RcHm_v2.0_Chr3g0494361 Rosa chinensis HOM05D004558 ORTHO05D005647 4.6e-115 418.3 276 75.4
unitig_46.g18485 Utricularia gibba HOM05D004558 ORTHO05D005647 4.6e-115 418.3 279 74.9
Peaxi162Scf00003g05355 Petunia axillaris HOM05D004558 ORTHO05D005647 6.1e-115 417.9 298 71.5
CANSAT78G1575 Cannabis sativa HOM05D004558 ORTHO05D005647 1.4e-114 416.8 281 73.7
HanXRQChr10g0291961 Helianthus annuus HOM05D004558 ORTHO05D005647 1.4e-114 416.8 228 86.4
Hma1.2p1_0251F.1_g102500 Hydrangea macrophylla HOM05D004558 ORTHO05D005647 1.4e-114 416.8 242 82.6
SEGI_29193 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 2.3e-114 416.0 233 83.7
Atru.chr1.1539 Acer truncatum HOM05D004558 ORTHO05D005647 3.0e-114 415.6 231 84.8
Rhsim04G0119100 Rhododendron simsii HOM05D004558 ORTHO05D005647 3.0e-114 415.6 225 87.6
CSS0026074 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 5.1e-114 414.8 231 85.3
CSS0045826 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 5.1e-114 414.8 231 85.3
Dinv11638 Davidia involucrata HOM05D004558 ORTHO05D005647 5.1e-114 414.8 279 72.8
AagrBONN_evm.TU.Sc2ySwM_228.50 Anthoceros agrestis HOM05D004558 ORTHO05D005647 1.1e-113 413.7 234 83.8
Oeu023011.1 Olea europaea HOM05D004558 ORTHO05D005647 1.1e-113 413.7 251 80.1
vmacro08967 Vaccinium macrocarpon HOM05D004558 ORTHO05D005647 4.3e-113 411.8 225 86.7
Pp3c11_7910 Physcomitrium patens HOM05D004558 ORTHO05D005647 7.4e-113 411.0 244 79.9
SMO119G0375 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 4.8e-112 408.3 239 81.6
Pp3c7_26570 Physcomitrium patens HOM05D004558 ORTHO05D005647 6.3e-112 407.9 247 80.2
Lj1A1078T64 Lonicera japonica HOM05D004558 ORTHO05D005647 1.4e-111 406.8 284 71.5
Rhsim04G0119000 Rhododendron simsii HOM05D004558 ORTHO05D005647 2.4e-111 406.0 239 82.4
Mapoly0124s0017 Marchantia polymorpha HOM05D004558 ORTHO05D005647 3.1e-111 405.6 228 84.2
EL10Ac3g07349 Beta vulgaris HOM05D004558 ORTHO05D005647 1.9e-108 396.4 269 74.3
AT3G56940 Arabidopsis thaliana HOM05D004558 ORTHO05D005647 4.4e-105 385.2 208 87.0
Cre12.g510050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 5.7e-105 384.8 269 68.0
CDE04G3757 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 1.2e-102 377.1 280 68.9
PRCOL_00006479 Prasinoderma coloniale HOM05D004558 ORTHO05D005647 5.9e-102 374.8 232 75.4
CBR_g50688 Chara braunii HOM05D004558 ORTHO05D005647 2.9e-101 372.5 238 74.4
Ah.04g150190 Amaranthus hybridus HOM05D004558 ORTHO05D005647 1.5e-100 370.2 241 75.5
SGA_v2.0_scaffold69G23196 Striga asiatica HOM05D004558 ORTHO05D005647 2.3e-98 362.8 249 74.7
MCO13G411 Micromonas commoda HOM05D004558 ORTHO05D005647 5.2e-98 361.7 228 75.4
Cre07.g346050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 1.4e-95 353.6 228 72.4
SMO115G0161 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 8.9e-74 281.2 239 59.8
Oeu021019.1 Olea europaea HOM05D004558 ORTHO05D005647 7.0e-71 271.6 282 53.5
SalBow1G4785 Salvia bowleyana HOM05D004558 ORTHO05D005647 1.0e-66 257.7 164 72.6
SalBow6G0122 Salvia bowleyana HOM05D004558 ORTHO05D005647 2.7e-54 216.5 123 80.5
CBR_g55376 Chara braunii HOM05D004558 ORTHO05D005647 4.6e-46 189.1 129 75.2
Pp3c2_30650 Physcomitrium patens HOM05D004558 ORTHO05D005647 3.3e-36 156.4 101 78.2
Ah.13g077400 Amaranthus hybridus HOM05D004558 ORTHO05D000435 1.8e-26 124.0 123 57.7
Lalb_Chr22g0357681 Lupinus albus HOM05D004558 ORTHO05D005647 3.1e-26 123.2 88 72.7
AagrBONN_evm.TU.Sc2ySwM_368.2127 Anthoceros agrestis HOM05D004558 ORTHO05D005647 6.0e-22 109.0 63 84.1
AagrBONN_evm.TU.Sc2ySwM_344.4282 Anthoceros agrestis HOM05D004558 ORTHO05D000003 2.4e-18 97.1 63 79.4
ClCG10G010310 Citrullus lanatus HOM05D004558 ORTHO05D005647 8.4e-16 88.6 54 66.7
SEGI_00644 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 2.5e-12 77.0 42 88.1
Lalb_Chr22g0358081 Lupinus albus HOM05D004558 ORTHO05D005647 1.8e-10 70.9 39 84.6
Lalb_Chr22g0358071 Lupinus albus HOM05D004558 ORTHO05D239964 6.9e-10 68.9 71 57.7
MSTRG.26191 Avicennia marina HOM05D004558 ORTHO05D087779 4.2e-07 59.7 53 58.5


User provided reference genes

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