Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE01G0302 Ceratophyllum demersum HOM05D006016 ORTHO05D007553 5.8e-167 590.9 315 100.0
Haze_04746 Corylus avellana HOM05D006016 ORTHO05D007553 4.9e-105 385.2 316 68.4
Cfa006104 Carpinus fangiana HOM05D006016 ORTHO05D007553 8.3e-105 384.4 316 68.4
Nn1g02145 Nelumbo nucifera HOM05D006016 ORTHO05D007553 8.3e-105 384.4 303 68.0
GSVIVG01011095001 Vitis vinifera HOM05D006016 ORTHO05D007553 8.3e-105 384.4 316 68.0
Aqoxy2G03243 Aquilegia oxysepala HOM05D006016 ORTHO05D007553 1.4e-104 383.6 312 63.1
CANSAT80G0718 Cannabis sativa HOM05D006016 ORTHO05D007553 5.4e-104 381.7 309 68.0
Thecc.01G283800 Theobroma cacao HOM05D006016 ORTHO05D007553 7.0e-104 381.3 312 67.6
CiPaw.07G094500 Carya illinoinensis HOM05D006016 ORTHO05D007553 1.2e-103 380.6 315 67.9
Duzib138G0992 Durio zibethinus HOM05D006016 ORTHO05D007553 1.2e-103 380.6 313 66.1
Eucgr.K03393 Eucalyptus grandis HOM05D006016 ORTHO05D007553 3.9e-102 375.6 257 78.6
Oeu011169.1 Olea europaea HOM05D006016 ORTHO05D007553 5.0e-102 375.2 321 62.3
PGR044G1280 Punica granatum HOM05D006016 ORTHO05D007553 6.6e-102 374.8 278 70.9
MD11G1289700 Malus domestica HOM05D006016 ORTHO05D007553 8.6e-102 374.4 283 70.7
QL12p022630 Quercus lobata HOM05D006016 ORTHO05D007553 1.1e-101 374.0 315 65.4
SGA_v2.0_scaffold1G00448 Striga asiatica HOM05D006016 ORTHO05D007553 1.1e-101 374.0 303 66.3
Eucgr.K03395 Eucalyptus grandis HOM05D006016 ORTHO05D007553 1.9e-101 373.2 257 77.0
Prupe.8G244900 Prunus persica HOM05D006016 ORTHO05D007553 2.5e-101 372.9 306 66.0
ATR0626G088 Amborella trichopoda HOM05D006016 ORTHO05D007553 3.3e-101 372.5 268 73.1
DCAR_002754 Daucus carota HOM05D006016 ORTHO05D007553 9.5e-101 370.9 318 64.8
Potri.014G138500 Populus trichocarpa HOM05D006016 ORTHO05D007553 9.5e-101 370.9 317 63.1
Hma1.2p1_0628F.1_g191900 Hydrangea macrophylla HOM05D006016 ORTHO05D007553 1.2e-100 370.5 265 73.2
COL.COLO4_09142 Corchorus olitorius HOM05D006016 ORTHO05D007553 2.8e-100 369.4 312 63.8
MSTRG.18215 Avicennia marina HOM05D006016 ORTHO05D007553 4.7e-100 368.6 315 64.8
Gohir.A08G069800 Gossypium hirsutum HOM05D006016 ORTHO05D007553 4.7e-100 368.6 257 73.9
TAR633G0970 Trochodendron aralioides HOM05D006016 ORTHO05D007553 4.7e-100 368.6 249 77.5
CARHR124900 Cardamine hirsuta HOM05D006016 ORTHO05D007553 6.2e-100 368.2 259 74.1
Cpa.g.sc485.5 Carica papaya HOM05D006016 ORTHO05D007553 6.2e-100 368.2 249 76.7
CSS0041846 Camellia sinensis var. sinensis HOM05D006016 ORTHO05D007553 8.0e-100 367.9 315 62.9
PSO170G1401 Papaver somniferum HOM05D006016 ORTHO05D007553 1.8e-99 366.7 276 67.8
PSO407G0301 Papaver somniferum HOM05D006016 ORTHO05D007553 1.8e-99 366.7 276 67.8
AUR62004906 Chenopodium quinoa HOM05D006016 ORTHO05D007553 3.1e-99 365.9 287 66.2
Gorai.004G083400 Gossypium raimondii HOM05D006016 ORTHO05D007553 3.1e-99 365.9 262 73.7
MD03G1268900 Malus domestica HOM05D006016 ORTHO05D007553 3.1e-99 365.9 311 63.7
Hund06953 Selenicereus undatus HOM05D006016 ORTHO05D007553 4.0e-99 365.5 320 64.1
Ciclev10020923m.g Citrus clementina HOM05D006016 ORTHO05D007553 6.8e-99 364.8 314 63.7
Nitab4.5_0006180g0080 Nicotiana tabacum HOM05D006016 ORTHO05D007553 8.9e-99 364.4 282 67.0
Manes.01G210000 Manihot esculenta HOM05D006016 ORTHO05D007553 2.0e-98 363.2 281 68.0
EL10Ac4g09090 Beta vulgaris HOM05D006016 ORTHO05D007553 4.4e-98 362.1 311 61.7
Nitab4.5_0007392g0030 Nicotiana tabacum HOM05D006016 ORTHO05D007553 5.8e-98 361.7 266 68.0
Cc02_g34480 Coffea canephora HOM05D006016 ORTHO05D007553 9.8e-98 360.9 273 69.6
FvH4_7g02610 Fragaria vesca HOM05D006016 ORTHO05D007553 9.8e-98 360.9 257 73.2
ClCG07G000070 Citrullus lanatus HOM05D006016 ORTHO05D007553 1.3e-97 360.5 315 64.4
Sc05g0005010 Simmondsia chinensis HOM05D006016 ORTHO05D007553 1.3e-97 360.5 257 72.8
Thhalv10001558m.g Eutrema salsugineum HOM05D006016 ORTHO05D007553 2.2e-97 359.8 279 68.8
Ca_09774_v3 Cicer arietinum L. HOM05D006016 ORTHO05D007553 2.9e-97 359.4 272 72.4
PGSC0003DMG400000944 Solanum tuberosum HOM05D006016 ORTHO05D007553 3.7e-97 359.0 266 70.3
Glyma.10G024400 Glycine max HOM05D006016 ORTHO05D007553 4.9e-97 358.6 303 62.7
BcaB02g08738 Brassica carinata HOM05D006016 ORTHO05D007553 6.4e-97 358.2 264 71.6
Sopen09g026490 Solanum pennellii HOM05D006016 ORTHO05D007553 8.3e-97 357.8 293 65.5
Solyc09g064790.3 Solanum lycopersicum HOM05D006016 ORTHO05D007553 1.1e-96 357.5 307 63.5
Carub.0004s3083 Capsella rubella HOM05D006016 ORTHO05D007553 1.9e-96 356.7 264 70.5
RcHm_v2.0_Chr1g0321311 Rosa chinensis HOM05D006016 ORTHO05D007553 2.4e-96 356.3 257 72.8
BraA05t18997Z Brassica rapa HOM05D006016 ORTHO05D007553 4.1e-96 355.5 265 71.7
FAN03G2867 Fragaria x ananassa HOM05D006016 ORTHO05D007553 4.1e-96 355.5 268 70.5
Migut.D00263 Erythranthe guttata HOM05D006016 ORTHO05D007553 1.6e-95 353.6 303 61.7
Sp4g30040 Schrenkiella parvula HOM05D006016 ORTHO05D007553 1.6e-95 353.6 263 71.9
arahy.Tifrunner.gnm1.ann1.NXI6YJ Arachis hypogaea HOM05D006016 ORTHO05D007553 2.0e-95 353.2 276 68.8
Atru.chr5.1361 Acer truncatum HOM05D006016 ORTHO05D007553 4.6e-95 352.1 316 62.3
arahy.Tifrunner.gnm1.ann1.Q6PPUG Arachis hypogaea HOM05D006016 ORTHO05D007553 4.6e-95 352.1 276 67.8
Peaxi162Scf00104g00220 Petunia axillaris HOM05D006016 ORTHO05D007553 1.0e-94 350.9 275 65.1
Sed0013000 Sechium edule HOM05D006016 ORTHO05D007553 1.7e-94 350.1 313 63.3
MELO3C014346.2 Cucumis melo HOM05D006016 ORTHO05D007553 3.9e-94 349.0 261 70.9
HPP92_025128 Vanilla planifolia HOM05D006016 ORTHO05D007553 8.6e-94 347.8 271 66.4
Aa31LG4G3290 Aethionema arabicum HOM05D006016 ORTHO05D007553 4.3e-93 345.5 274 65.3
CAN.G962.6 Capsicum annuum HOM05D006016 ORTHO05D007553 4.3e-93 345.5 263 68.8
AUR62032753 Chenopodium quinoa HOM05D006016 ORTHO05D007553 5.6e-93 345.1 247 70.0
TPR.G1544 Trifolium pratense HOM05D000563 ORTHO05D000536 9.5e-93 344.4 266 71.1
AL4G47720 Arabidopsis lyrata HOM05D006016 ORTHO05D007553 2.1e-92 343.2 264 70.1
Medtr1g072640 Medicago truncatula HOM05D006016 ORTHO05D007553 4.7e-92 342.0 268 70.5
Lalb_Chr21g0306561 Lupinus albus HOM05D006016 ORTHO05D007553 8.1e-92 341.3 308 63.3
Os05g0393400 Oryza sativa ssp. japonica HOM05D006016 ORTHO05D007553 1.1e-91 340.9 267 64.4
A05p00010 Brassica napus HOM05D006016 ORTHO05D007553 1.8e-91 340.1 256 71.5
BolC4t21679H Brassica oleracea HOM05D006016 ORTHO05D007553 2.3e-91 339.7 284 66.5
FAN01G1545 Fragaria x ananassa HOM05D006016 ORTHO05D007553 4.0e-91 339.0 313 61.7
BolSC55t61226H Brassica oleracea HOM05D006016 ORTHO05D007553 6.8e-91 338.2 284 66.2
HanXRQChr01g0002401 Helianthus annuus HOM05D006016 ORTHO05D007553 5.8e-90 335.1 315 58.7
Lsat_1_v5_gn_5_187441 Lactuca sativa HOM05D006016 ORTHO05D007553 1.7e-89 333.6 316 59.5
THA.LOC104823056 Tarenaya hassleriana HOM05D006016 ORTHO05D007553 2.9e-89 332.8 276 65.9
unitig_61.g26325 Utricularia gibba HOM05D006016 ORTHO05D007553 2.9e-89 332.8 307 61.2
Lj5g0023557 Lotus japonicus HOM05D006016 ORTHO05D007553 6.4e-89 331.6 226 73.9
ECA248G0902 Erigeron canadensis HOM05D006016 ORTHO05D007553 1.1e-88 330.9 275 64.7
Lj2C1178T3 Lonicera japonica HOM05D006016 ORTHO05D007553 1.1e-88 330.9 225 75.1
arahy.Tifrunner.gnm1.ann1.95RMVD Arachis hypogaea HOM05D006016 ORTHO05D007553 2.4e-88 329.7 265 66.4
SalBow4G2498 Salvia bowleyana HOM05D006016 ORTHO05D007553 4.1e-88 328.9 279 63.4
Zm00001eb287380 Zea mays HOM05D006016 ORTHO05D007553 4.6e-87 325.5 249 67.9
BcaC02g12797 Brassica carinata HOM05D006016 ORTHO05D007553 7.8e-87 324.7 265 68.7
BolSC55t61222H Brassica oleracea HOM05D006016 ORTHO05D007553 2.3e-86 323.2 269 65.1
CsaV3_6G036870 Cucumis sativus L. HOM05D006016 ORTHO05D007553 1.5e-85 320.5 261 66.7
Sabra14G0104500 Salix brachista HOM05D006016 ORTHO05D007553 9.5e-85 317.8 316 55.7
AT2G48120 Arabidopsis thaliana HOM05D006016 ORTHO05D007553 1.6e-84 317.0 228 69.3
Rhsim01G0276200 Rhododendron simsii HOM05D006016 ORTHO05D007553 3.6e-84 315.8 399 47.4
BNapus_Darmor_BZH_scaffold_188p00120 Brassica napus HOM05D006016 ORTHO05D007553 6.2e-84 315.1 225 70.2
BNapus_Darmor_BZH_scaffold_188p00130 Brassica napus HOM05D006016 ORTHO05D007553 6.2e-84 315.1 225 70.2
Phvul.007G169400 Phaseolus vulgaris HOM05D006016 ORTHO05D007553 3.1e-83 312.8 260 66.5
TWI14G0073 Tripterygium wilfordii HOM05D006016 ORTHO05D007553 2.6e-82 309.7 311 55.9
Psat6g138080 Pisum sativum HOM05D006016 ORTHO05D007553 4.1e-80 302.4 228 69.7
SEGI_37912 Sequoiadendron giganteum HOM05D006016 ORTHO05D007553 4.3e-77 292.4 273 59.0
BcaC02g12566 Brassica carinata HOM05D006016 ORTHO05D007553 7.3e-77 291.6 266 64.3
Gohir.D08G079100 Gossypium hirsutum HOM05D006016 ORTHO05D007553 4.7e-76 288.9 257 62.6
Dinv32962 Davidia involucrata HOM05D006016 ORTHO05D007553 1.3e-73 280.8 185 74.6
Hma1.2p1_0628F.1_g191890 Hydrangea macrophylla HOM05D006016 ORTHO05D007553 1.9e-72 276.9 232 64.7
vmacro14936 Vaccinium macrocarpon HOM05D006016 ORTHO05D007553 1.5e-69 267.3 314 51.6
arahy.Tifrunner.gnm1.ann1.9IJ3BZ Arachis hypogaea HOM05D006016 ORTHO05D007553 1.5e-66 257.3 289 54.0
QL10p008835 Quercus lobata HOM05D006016 ORTHO05D007553 1.3e-65 254.2 181 74.6
SMO360G0019 Selaginella moellendorffii HOM05D006016 ORTHO05D007553 2.2e-65 253.4 253 54.5
BolSC55t61219H Brassica oleracea HOM05D006016 ORTHO05D007553 8.4e-65 251.5 173 77.5
Mapoly0059s0024 Marchantia polymorpha HOM05D006016 ORTHO05D007553 2.1e-60 236.9 251 50.2
Actinidia21099 Actinidia chinensis HOM05D006016 ORTHO05D007553 1.4e-59 234.2 261 53.3
BolSC55t61223H Brassica oleracea HOM05D006016 ORTHO05D007553 1.4e-59 234.2 171 73.7
Pp3c5_15510 Physcomitrium patens HOM05D006016 ORTHO05D007553 9.0e-59 231.5 274 52.2
Lj9C654T2 Lonicera japonica HOM05D006016 ORTHO05D007553 4.8e-44 182.6 187 52.4
Glyma.02G149402 Glycine max HOM05D006016 ORTHO05D007553 8.2e-44 181.8 160 67.5
AagrBONN_evm.TU.Sc2ySwM_228.5509 Anthoceros agrestis HOM05D006016 ORTHO05D007553 3.2e-40 169.9 172 47.1
BraA05t18995Z Brassica rapa HOM05D006016 ORTHO05D007553 1.2e-39 167.9 128 64.8
BNapus_Darmor_BZH_scaffold_188p00100 Brassica napus HOM05D006016 ORTHO05D007553 1.4e-35 154.5 125 62.4
BNapus_Darmor_BZH_scaffold_188p00090 Brassica napus HOM05D001484 ORTHO05D007553 3.0e-30 136.7 103 76.7
CBR_g23747 Chara braunii HOM05D006016 ORTHO05D007553 7.4e-29 132.1 222 36.5
Actinidia24878 Actinidia chinensis HOM05D006016 ORTHO05D007553 4.8e-28 129.4 183 46.4
QL09p051040 Quercus lobata HOM05D006016 ORTHO05D007553 3.2e-24 116.7 119 53.8
Oeu001432.1 Olea europaea HOM05D006016 ORTHO05D007553 4.2e-24 116.3 98 60.2
AUR62004907 Chenopodium quinoa HOM05D006016 ORTHO05D007553 2.4e-19 100.5 78 66.7
QL09p050526 Quercus lobata HOM05D006016 ORTHO05D337571 7.0e-19 99.0 107 54.2
BcaC08g43234 Brassica carinata HOM05D006016 ORTHO05D007553 5.2e-14 82.8 68 55.9
MBI04_g32261_MAGBIO Magnolia biondii HOM05D006016 ORTHO05D007553 5.7e-13 79.3 72 59.7
Dinv13370 Davidia involucrata HOM05D006016 ORTHO05D007553 4.5e-10 69.7 101 45.5
Dinv01676 Davidia involucrata HOM05D006016 ORTHO05D007553 3.2e-08 63.5 65 56.9
BolC6t35694H Brassica oleracea HOM05D006016 ORTHO05D007553 7.2e-08 62.4 46 73.9
Dinv16891 Davidia involucrata HOM05D006016 ORTHO05D007553 2.1e-07 60.8 65 58.5
Lj9C654T3 Lonicera japonica HOM05D006016 ORTHO05D007553 8.0e-07 58.9 40 75.0
QL09p050966 Quercus lobata HOM05D001484 ORTHO05D001564 3.0e-06 57.0 34 61.8


User provided reference genes

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