Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g8587 Chara braunii HOM05D000104 ORTHO05D004059 0.0e+00 1227.2 636 100.0
Mapoly0004s0169 Marchantia polymorpha HOM05D000104 ORTHO05D004059 3.2e-15 87.8 81 63.0
SMO340G0322 Selaginella moellendorffii HOM05D000104 ORTHO05D004059 7.2e-15 86.7 75 61.3
Pp3c11_18940 Physcomitrium patens HOM05D000104 ORTHO05D004059 8.0e-14 83.2 79 64.6
Pp3c7_3340 Physcomitrium patens HOM05D000104 ORTHO05D004059 8.0e-14 83.2 79 64.6
AagrBONN_evm.TU.Sc2ySwM_362.2646 Anthoceros agrestis HOM05D000104 ORTHO05D004059 2.0e-12 78.6 92 53.3
SEGI_06653 Sequoiadendron giganteum HOM05D000104 ORTHO05D004059 4.8e-11 73.9 135 37.0
Ah.04g153940 Amaranthus hybridus HOM05D000104 ORTHO05D004059 2.4e-10 71.6 71 53.5
EL10Ac3g06549 Beta vulgaris HOM05D000104 ORTHO05D004059 3.1e-10 71.2 79 48.1
Eucgr.H03855 Eucalyptus grandis HOM05D000104 ORTHO05D004059 3.1e-10 71.2 71 50.7
ClCG06G005340 Citrullus lanatus HOM05D000104 ORTHO05D004059 4.1e-10 70.9 74 55.4
AUR62043504 Chenopodium quinoa HOM05D000104 ORTHO05D004059 5.4e-10 70.5 79 48.1
MELO3C021353.2 Cucumis melo HOM05D000104 ORTHO05D004059 5.4e-10 70.5 74 55.4
CsaV3_6G017380 Cucumis sativus L. HOM05D000104 ORTHO05D004059 5.4e-10 70.5 74 55.4
ATR0706G043 Amborella trichopoda HOM05D000104 ORTHO05D004059 7.0e-10 70.1 75 52.0
Aqoxy5G00651 Aquilegia oxysepala HOM05D000104 ORTHO05D004059 7.0e-10 70.1 81 51.9
AUR62042647 Chenopodium quinoa HOM05D000104 ORTHO05D004059 7.0e-10 70.1 79 48.1
Phvul.006G162200 Phaseolus vulgaris HOM05D000104 ORTHO05D004059 9.1e-10 69.7 70 50.0
Thecc.04G279200 Theobroma cacao HOM05D000104 ORTHO05D004059 9.1e-10 69.7 71 49.3
A05p41630 Brassica napus HOM05D000104 ORTHO05D004059 1.2e-09 69.3 100 43.0
Ciclev10004220m.g Citrus clementina HOM05D000104 ORTHO05D004059 1.2e-09 69.3 79 48.1
Rhsim02G0012600 Rhododendron simsii HOM05D000104 ORTHO05D004059 1.6e-09 68.9 74 51.4
Hund24922 Selenicereus undatus HOM05D000104 ORTHO05D004059 1.6e-09 68.9 73 52.1
Ah.13g074500 Amaranthus hybridus HOM05D000104 ORTHO05D004059 2.7e-09 68.2 71 49.3
arahy.Tifrunner.gnm1.ann1.8XLM1I Arachis hypogaea HOM05D000104 ORTHO05D004059 2.7e-09 68.2 74 48.6
arahy.Tifrunner.gnm1.ann1.QF6VR4 Arachis hypogaea HOM05D000104 ORTHO05D004059 2.7e-09 68.2 74 48.6
CSS0045860 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D004059 2.7e-09 68.2 74 51.4
CSS0047645 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D004059 2.7e-09 68.2 74 51.4
Ca_21543_v3 Cicer arietinum L. HOM05D000104 ORTHO05D004059 2.7e-09 68.2 79 46.8
CBR_g72628 Chara braunii HOM05D002937 ORTHO05D003063 3.5e-09 67.8 333 25.2
Sabra10G0016100 Salix brachista HOM05D000104 ORTHO05D004059 3.5e-09 67.8 73 49.3
VMungo1215G1275 Vigna mungo HOM05D000104 ORTHO05D004059 3.5e-09 67.8 79 45.6
GSVIVG01017791001 Vitis vinifera HOM05D000104 ORTHO05D004059 3.5e-09 67.8 74 50.0
Aqoxy2G03083 Aquilegia oxysepala HOM05D000104 ORTHO05D004059 4.5e-09 67.4 67 53.7
CARHR194400 Cardamine hirsuta HOM05D000104 ORTHO05D004059 4.5e-09 67.4 87 43.7
Medtr2g020000 Medicago truncatula HOM05D000104 ORTHO05D004059 4.5e-09 67.4 70 50.0
Nitab4.5_0001459g0150 Nicotiana tabacum HOM05D000104 ORTHO05D004059 4.5e-09 67.4 74 50.0
Nitab4.5_0002148g0030 Nicotiana tabacum HOM05D000104 ORTHO05D004059 4.5e-09 67.4 74 50.0
Oeu026198.1 Olea europaea HOM05D000104 ORTHO05D004059 4.5e-09 67.4 78 52.6
Sed0025792 Sechium edule HOM05D000104 ORTHO05D004059 4.5e-09 67.4 74 52.7
Solyc01g067390.4 Solanum lycopersicum HOM05D000104 ORTHO05D004059 4.5e-09 67.4 72 50.0
Sopen01g029280 Solanum pennellii HOM05D000104 ORTHO05D004059 4.5e-09 67.4 72 50.0
VMungo0540G0816 Vigna mungo HOM05D000104 ORTHO05D004059 4.5e-09 67.4 70 48.6
BcaB04g20383 Brassica carinata HOM05D000104 ORTHO05D004059 5.9e-09 67.0 71 53.5
Cpa.g.sc16.129 Carica papaya HOM05D000104 ORTHO05D004059 5.9e-09 67.0 74 48.6
ECA240G3320 Erigeron canadensis HOM05D001942 ORTHO05D004059 5.9e-09 67.0 82 45.1
MBI18_g12430_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D004059 5.9e-09 67.0 77 49.4
Manes.15G015800 Manihot esculenta HOM05D000104 ORTHO05D004059 5.9e-09 67.0 74 48.6
Phvul.003G101700 Phaseolus vulgaris HOM05D000104 ORTHO05D004059 5.9e-09 67.0 71 49.3
vmacro08189 Vaccinium macrocarpon HOM05D000104 ORTHO05D004059 5.9e-09 67.0 73 50.7
vmacro22484 Vaccinium macrocarpon HOM05D000104 ORTHO05D004059 5.9e-09 67.0 73 50.7
BcaC05g29814 Brassica carinata HOM05D000104 ORTHO05D004059 7.7e-09 66.6 75 50.7
BolC5t34741H Brassica oleracea HOM05D000104 ORTHO05D004059 7.7e-09 66.6 75 50.7
BraA05t22882Z Brassica rapa HOM05D000104 ORTHO05D004059 7.7e-09 66.6 79 48.1
Cc03_g02210 Coffea canephora HOM05D000104 ORTHO05D004059 7.7e-09 66.6 73 49.3
Dinv44417 Davidia involucrata HOM05D000104 ORTHO05D004059 7.7e-09 66.6 74 50.0
Migut.N00114 Erythranthe guttata HOM05D000104 ORTHO05D004059 7.7e-09 66.6 74 45.9
Thhalv10019967m.g Eutrema salsugineum HOM05D000104 ORTHO05D004059 7.7e-09 66.6 74 50.0
Lalb_Chr12g0196491 Lupinus albus HOM05D000104 ORTHO05D004059 7.7e-09 66.6 72 51.4
Lalb_Chr20g0118071 Lupinus albus HOM05D000104 ORTHO05D004059 7.7e-09 66.6 71 47.9
Potri.008G205600 Populus trichocarpa HOM05D000104 ORTHO05D004059 7.7e-09 66.6 74 47.3
Sc19g0004980 Simmondsia chinensis HOM05D000104 ORTHO05D004059 7.7e-09 66.6 75 46.7
TWI73G0509 Tripterygium wilfordii HOM05D000104 ORTHO05D004059 7.7e-09 66.6 75 49.3
CAN.G580.12 Capsicum annuum HOM05D000104 ORTHO05D004059 1.0e-08 66.2 72 48.6
Duzib052G0958 Durio zibethinus HOM05D000104 ORTHO05D004059 1.0e-08 66.2 74 47.3
Glyma.07G250700 Glycine max HOM05D000104 ORTHO05D004059 1.0e-08 66.2 79 45.6
Glyma.17G023600 Glycine max HOM05D000104 ORTHO05D004059 1.0e-08 66.2 79 45.6
Gohir.A09G240700 Gossypium hirsutum HOM05D000104 ORTHO05D004059 1.0e-08 66.2 77 45.5
Gohir.D10G167400 Gossypium hirsutum HOM05D000104 ORTHO05D004059 1.0e-08 66.2 89 43.8
Gorai.011G187000 Gossypium raimondii HOM05D000104 ORTHO05D004059 1.0e-08 66.2 89 43.8
Os01g0367900 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D004059 1.0e-08 66.2 70 50.0
Prupe.1G140700 Prunus persica HOM05D000104 ORTHO05D004059 1.0e-08 66.2 77 49.4
TAR362G0596 Trochodendron aralioides HOM05D000104 ORTHO05D004059 1.0e-08 66.2 72 51.4
TAR636G2253 Trochodendron aralioides HOM05D000104 ORTHO05D004059 1.0e-08 66.2 74 51.4
Actinidia01938 Actinidia chinensis HOM05D000104 ORTHO05D004059 1.3e-08 65.9 73 49.3
Actinidia40235 Actinidia chinensis HOM05D000104 ORTHO05D004059 1.3e-08 65.9 73 49.3
arahy.Tifrunner.gnm1.ann1.380C72 Arachis hypogaea HOM05D000104 ORTHO05D004059 1.3e-08 65.9 79 44.3
arahy.Tifrunner.gnm1.ann1.QCS8A7 Arachis hypogaea HOM05D000104 ORTHO05D004059 1.3e-08 65.9 79 44.3
Manes.03G191900 Manihot esculenta HOM05D000104 ORTHO05D004059 1.3e-08 65.9 74 47.3
Rhsim04G0217800 Rhododendron simsii HOM05D000104 ORTHO05D004059 1.3e-08 65.9 73 49.3
vmacro15253 Vaccinium macrocarpon HOM05D000104 ORTHO05D004059 1.3e-08 65.9 74 50.0
Zm00001eb131790 Zea mays HOM05D000104 ORTHO05D004059 1.3e-08 65.9 79 45.6
CiPaw.01G152100 Carya illinoinensis HOM05D000104 ORTHO05D004059 1.7e-08 65.5 77 46.8
CDE09G0260 Ceratophyllum demersum HOM05D000104 ORTHO05D004059 1.7e-08 65.5 79 48.1
Gohir.D09G241400 Gossypium hirsutum HOM05D000104 ORTHO05D004059 1.7e-08 65.5 77 45.5
Lalb_Chr18g0055671 Lupinus albus HOM05D000104 ORTHO05D004059 1.7e-08 65.5 74 47.3
Nn3g21341 Nelumbo nucifera HOM05D000104 ORTHO05D004059 1.7e-08 65.5 72 50.0
Duzib151G0745 Durio zibethinus HOM05D000104 ORTHO05D004059 2.3e-08 65.1 89 42.7
Gohir.A10G161000 Gossypium hirsutum HOM05D000104 ORTHO05D004059 2.3e-08 65.1 89 42.7
Gohir.D02G052600 Gossypium hirsutum HOM05D000104 ORTHO05D004059 2.3e-08 65.1 74 45.9
Gorai.005G058400 Gossypium raimondii HOM05D000104 ORTHO05D004059 2.3e-08 65.1 74 45.9
Os05g0150300 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D004059 2.3e-08 65.1 71 47.9
Peaxi162Scf00386g00817 Petunia axillaris HOM05D000104 ORTHO05D004059 2.3e-08 65.1 78 46.2
Solyc06g054560.3 Solanum lycopersicum HOM05D000104 ORTHO05D004059 2.3e-08 65.1 72 50.0
Sopen06g019630 Solanum pennellii HOM05D000104 ORTHO05D004059 2.3e-08 65.1 72 50.0
TPR.G28791 Trifolium pratense HOM05D000104 ORTHO05D004059 2.3e-08 65.1 72 51.4
Gorai.006G264900 Gossypium raimondii HOM05D000104 ORTHO05D004059 2.9e-08 64.7 77 44.2
HanXRQChr03g0080881 Helianthus annuus HOM05D000104 ORTHO05D004059 2.9e-08 64.7 74 47.3
QL06p007627 Quercus lobata HOM05D000104 ORTHO05D004059 2.9e-08 64.7 77 48.1
SalBow5G1000 Salvia bowleyana HOM05D000104 ORTHO05D004059 2.9e-08 64.7 76 46.1
TWI53G0508 Tripterygium wilfordii HOM05D000104 ORTHO05D004059 2.9e-08 64.7 77 46.8
TWI53G1517 Tripterygium wilfordii HOM05D000104 ORTHO05D004059 2.9e-08 64.7 77 46.8
MSTRG.24782 Avicennia marina HOM05D000104 ORTHO05D004059 3.8e-08 64.3 74 47.3
CSS0038902 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D004059 3.8e-08 64.3 77 48.1
COL.COLO4_13917 Corchorus olitorius HOM05D000104 ORTHO05D004059 3.8e-08 64.3 80 43.8
Glyma.15G097000 Glycine max HOM05D000104 ORTHO05D004059 3.8e-08 64.3 74 45.9
Sp3g05320 Schrenkiella parvula HOM05D000104 ORTHO05D004059 3.8e-08 64.3 101 39.6
Atru.chr4.2776 Acer truncatum HOM05D000104 ORTHO05D004059 5.0e-08 63.9 89 40.4
Lj6C670T12 Lonicera japonica HOM05D000104 ORTHO05D004059 5.0e-08 63.9 72 48.6
Potri.010G021400 Populus trichocarpa HOM05D000104 ORTHO05D004059 5.0e-08 63.9 72 47.2
PGSC0003DMG400030785 Solanum tuberosum HOM05D000104 ORTHO05D004059 5.0e-08 63.9 80 45.0
HPP92_013699 Vanilla planifolia HOM05D000104 ORTHO05D004059 5.0e-08 63.9 69 52.2
Lsat_1_v5_gn_5_52080 Lactuca sativa HOM05D000104 ORTHO05D004059 6.5e-08 63.5 74 45.9
Lj4g0009367 Lotus japonicus HOM05D000104 ORTHO05D004059 6.5e-08 63.5 74 47.3
LjContig00389g0006961 Lotus japonicus HOM05D000104 ORTHO05D004059 6.5e-08 63.5 72 50.0
TPR.G1518 Trifolium pratense HOM05D000104 ORTHO05D004059 6.5e-08 63.5 67 50.7
CiPaw.02G085600 Carya illinoinensis HOM05D000104 ORTHO05D004059 8.6e-08 63.2 82 43.9
CANSAT78G2178 Cannabis sativa HOM05D000104 ORTHO05D004059 1.1e-07 62.8 72 47.2
CDE05G1697 Ceratophyllum demersum HOM05D000104 ORTHO05D004059 1.1e-07 62.8 75 45.3
Glyma.13G215900 Glycine max HOM05D000104 ORTHO05D004059 1.1e-07 62.8 74 45.9
Lj3C812G10 Lonicera japonica HOM05D000104 ORTHO05D004059 1.1e-07 62.8 71 49.3
Psat4g029280 Pisum sativum HOM05D000104 ORTHO05D004059 1.1e-07 62.8 80 46.2
Oeu029265.2 Olea europaea HOM05D000104 ORTHO05D004059 1.5e-07 62.4 82 42.7
SGA_v2.0_scaffold155G37253 Striga asiatica HOM05D000104 ORTHO05D004059 1.5e-07 62.4 73 49.3
BcaC05g30030 Brassica carinata HOM05D000104 ORTHO05D004059 1.9e-07 62.0 99 42.4
Haze_01251 Corylus avellana HOM05D000104 ORTHO05D004059 1.9e-07 62.0 75 45.3
Sabra08G0156300 Salix brachista HOM05D000104 ORTHO05D004059 1.9e-07 62.0 63 49.2
SalBow2G0378 Salvia bowleyana HOM05D000104 ORTHO05D004059 1.9e-07 62.0 74 47.3
Aa31LG11G10990 Aethionema arabicum HOM05D000104 ORTHO05D004059 2.5e-07 61.6 69 46.4
CBR_g11055 Chara braunii HOM05D002937 ORTHO05D003063 2.5e-07 61.6 107 37.4
Ca_00564_v3 Cicer arietinum L. HOM05D000104 ORTHO05D004059 2.5e-07 61.6 67 50.7
Gohir.A02G047300 Gossypium hirsutum HOM05D000104 ORTHO05D004059 2.5e-07 61.6 74 43.2
MD16G1173900 Malus domestica HOM05D000104 ORTHO05D004059 3.3e-07 61.2 79 45.6
RcHm_v2.0_Chr4g0421321 Rosa chinensis HOM05D000104 ORTHO05D004059 3.3e-07 61.2 75 45.3
FvH4_4g17400 Fragaria vesca HOM05D000104 ORTHO05D004059 5.5e-07 60.5 75 45.3
PSO210G7761 Papaver somniferum HOM05D000104 ORTHO05D004059 5.5e-07 60.5 80 42.5
Psat1g187480 Pisum sativum HOM05D000104 ORTHO05D004059 5.5e-07 60.5 67 46.3
PSO832G0743 Papaver somniferum HOM05D000104 ORTHO05D004059 7.2e-07 60.1 82 40.2
SGA_v2.0_scaffold57G20227 Striga asiatica HOM05D000104 ORTHO05D004059 7.2e-07 60.1 74 44.6
A02p05050 Brassica napus HOM05D000104 ORTHO05D004059 9.5e-07 59.7 62 50.0
Migut.G00196 Erythranthe guttata HOM05D000104 ORTHO05D004059 9.5e-07 59.7 74 43.2
FAN12G3725 Fragaria x ananassa HOM05D000104 ORTHO05D004059 9.5e-07 59.7 74 44.6
FAN12G3941 Fragaria x ananassa HOM05D000104 ORTHO05D004059 9.5e-07 59.7 74 44.6
FAN22G2315 Fragaria x ananassa HOM05D000104 ORTHO05D004059 9.5e-07 59.7 74 44.6
THA.LOC104802723 Tarenaya hassleriana HOM05D000104 ORTHO05D004059 9.5e-07 59.7 69 46.4
C05p60840 Brassica napus HOM05D000104 ORTHO05D004059 1.2e-06 59.3 101 39.6
Sc25g0004720 Simmondsia chinensis HOM05D000104 ORTHO05D004059 1.2e-06 59.3 60 53.3
FAN07G2499 Fragaria x ananassa HOM05D000104 ORTHO05D004059 1.6e-06 58.9 74 44.6
MCO16G472 Micromonas commoda HOM05D000104 ORTHO05D004059 1.6e-06 58.9 80 42.5
Nitab4.5_0002986g0070 Nicotiana tabacum HOM05D000104 ORTHO05D004059 1.6e-06 58.9 74 44.6
Hund20594 Selenicereus undatus HOM05D000104 ORTHO05D004059 1.6e-06 58.9 72 48.6
Thhalv10012527m.g Eutrema salsugineum HOM05D000104 ORTHO05D004059 2.8e-06 58.2 83 41.0
FAN17G2543 Fragaria x ananassa HOM05D000104 ORTHO05D004059 2.8e-06 58.2 74 44.6
C09p57830 Brassica napus HOM05D000104 ORTHO05D004059 6.1e-06 57.0 74 44.6
BolC9t58653H Brassica oleracea HOM05D000104 ORTHO05D004059 6.1e-06 57.0 74 44.6
CBR_g39078 Chara braunii HOM05D002937 ORTHO05D003063 8.0e-06 56.6 331 22.4


User provided reference genes

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