Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g70720 Chara braunii HOM05D004285 ORTHO05D005176 5.6e-167 591.3 393 100.0
AagrBONN_evm.TU.Sc2ySwM_228.3779 Anthoceros agrestis HOM05D004285 ORTHO05D005176 7.3e-50 202.2 208 58.7
Ca_16982_v3 Cicer arietinum L. HOM05D004285 ORTHO05D005176 9.5e-50 201.8 192 57.3
CsaV3_4G030940 Cucumis sativus L. HOM05D004285 ORTHO05D005176 8.1e-49 198.7 210 55.7
Psat5g059640 Pisum sativum HOM05D004285 ORTHO05D005176 1.1e-48 198.4 192 57.3
Mapoly0073s0065 Marchantia polymorpha HOM05D004285 ORTHO05D005176 1.8e-48 197.6 256 50.4
Sed0015518 Sechium edule HOM05D004285 ORTHO05D005176 2.3e-48 197.2 179 60.3
Lalb_Chr11g0068611 Lupinus albus HOM05D004285 ORTHO05D005176 3.1e-48 196.8 186 59.1
MELO3C008970.2 Cucumis melo HOM05D004285 ORTHO05D005176 4.0e-48 196.4 223 53.8
Lj4g0011662 Lotus japonicus HOM05D004285 ORTHO05D005176 8.9e-48 195.3 210 55.2
TPR.G33552 Trifolium pratense HOM05D004285 ORTHO05D005176 8.9e-48 195.3 186 58.1
Lalb_Chr08g0238191 Lupinus albus HOM05D004285 ORTHO05D005176 1.2e-47 194.9 181 59.1
TPR.G24222 Trifolium pratense HOM05D004285 ORTHO05D005176 1.2e-47 194.9 175 60.6
SMO232G0091 Selaginella moellendorffii HOM05D004285 ORTHO05D005176 1.5e-47 194.5 202 55.9
CANSAT80G1716 Cannabis sativa HOM05D004285 ORTHO05D005176 2.0e-47 194.1 181 59.1
GSVIVG01029745001 Vitis vinifera HOM05D004285 ORTHO05D005176 2.0e-47 194.1 211 54.5
HPP92_022156 Vanilla planifolia HOM05D004285 ORTHO05D005176 3.4e-47 193.4 185 58.9
Phvul.009G154500 Phaseolus vulgaris HOM05D004285 ORTHO05D005176 4.4e-47 193.0 192 56.8
Cpa.g.sc37.8 Carica papaya HOM05D004285 ORTHO05D005176 7.5e-47 192.2 228 51.8
Lj1g0004585 Lotus japonicus HOM05D004285 ORTHO05D005176 7.5e-47 192.2 192 56.8
Nitab4.5_0009744g0020 Nicotiana tabacum HOM05D004285 ORTHO05D005176 7.5e-47 192.2 182 57.7
Hund21406 Selenicereus undatus HOM05D004285 ORTHO05D005176 7.5e-47 192.2 185 58.4
TWI79G0936 Tripterygium wilfordii HOM05D004285 ORTHO05D005176 7.5e-47 192.2 185 57.8
VMungo1309G0657 Vigna mungo HOM05D004285 ORTHO05D005176 7.5e-47 192.2 192 56.8
Sabra05G0055600 Salix brachista HOM05D004285 ORTHO05D005176 9.9e-47 191.8 176 59.7
Atru.chr4.994 Acer truncatum HOM05D004285 ORTHO05D005176 1.3e-46 191.4 179 58.7
Glyma.06G155800 Glycine max HOM05D004285 ORTHO05D005176 1.3e-46 191.4 192 56.2
CiPaw.03G117900 Carya illinoinensis HOM05D004285 ORTHO05D005176 2.2e-46 190.7 189 57.7
VMungo1309G3080 Vigna mungo HOM05D004285 ORTHO05D005176 2.2e-46 190.7 183 57.4
Glyma.04G210200 Glycine max HOM05D004285 ORTHO05D005176 2.9e-46 190.3 212 52.8
Manes.06G003800 Manihot esculenta HOM05D004285 ORTHO05D005176 2.9e-46 190.3 195 54.4
Nitab4.5_0000668g0170 Nicotiana tabacum HOM05D004285 ORTHO05D005176 2.9e-46 190.3 182 57.7
Dinv12984 Davidia involucrata HOM05D004285 ORTHO05D005176 3.7e-46 189.9 176 59.7
Potri.005G067700 Populus trichocarpa HOM05D004285 ORTHO05D005176 3.7e-46 189.9 177 58.8
FvH4_4g10490 Fragaria vesca HOM05D004285 ORTHO05D005176 4.9e-46 189.5 192 56.2
MBI04_g38139_MAGBIO Magnolia biondii HOM05D004285 ORTHO05D005176 4.9e-46 189.5 178 57.3
AagrBONN_evm.TU.Sc2ySwM_117.2591 Anthoceros agrestis HOM05D004285 ORTHO05D005176 6.4e-46 189.1 214 53.7
Cfa002202 Carpinus fangiana HOM05D004285 ORTHO05D005176 6.4e-46 189.1 181 58.0
Peaxi162Scf00169g00092 Petunia axillaris HOM05D004285 ORTHO05D005176 6.4e-46 189.1 179 57.5
Potri.007G101500 Populus trichocarpa HOM05D004285 ORTHO05D005176 6.4e-46 189.1 177 58.8
Thecc.01G137100 Theobroma cacao HOM05D004285 ORTHO05D005176 6.4e-46 189.1 180 57.2
AUR62012692 Chenopodium quinoa HOM05D004285 ORTHO05D005176 8.3e-46 188.7 181 58.0
AUR62021963 Chenopodium quinoa HOM05D004285 ORTHO05D005176 8.3e-46 188.7 181 58.0
Cc03_g16000 Coffea canephora HOM05D004285 ORTHO05D005176 8.3e-46 188.7 180 57.8
MSTRG.22052 Avicennia marina HOM05D004285 ORTHO05D005176 1.1e-45 188.3 182 54.9
MD15G1135100 Malus domestica HOM05D004285 ORTHO05D005176 1.1e-45 188.3 178 59.0
Prupe.4G274300 Prunus persica HOM05D004285 ORTHO05D005176 1.4e-45 188.0 178 59.0
Sc03g0010160 Simmondsia chinensis HOM05D004285 ORTHO05D005176 1.4e-45 188.0 203 54.7
AL6G19650 Arabidopsis lyrata HOM05D004285 ORTHO05D005176 1.9e-45 187.6 206 53.4
EL10Ac8g20044 Beta vulgaris HOM05D004285 ORTHO05D005176 1.9e-45 187.6 208 52.9
Gorai.012G036800 Gossypium raimondii HOM05D004285 ORTHO05D005176 1.9e-45 187.6 179 56.4
Sabra07G0083700 Salix brachista HOM05D004285 ORTHO05D005176 2.4e-45 187.2 177 58.2
SGA_v2.0_scaffold12G06217 Striga asiatica HOM05D004285 ORTHO05D005176 2.4e-45 187.2 176 58.5
QL10p041258 Quercus lobata HOM05D004285 ORTHO05D005176 3.2e-45 186.8 189 56.1
QL10p041526 Quercus lobata HOM05D004285 ORTHO05D005176 3.2e-45 186.8 189 56.1
RcHm_v2.0_Chr4g0406031 Rosa chinensis HOM05D004285 ORTHO05D005176 3.2e-45 186.8 192 56.2
PGR102G2430 Punica granatum HOM05D004285 ORTHO05D005176 4.1e-45 186.4 210 53.3
Sopen12g032480 Solanum pennellii HOM05D004285 ORTHO05D005176 4.1e-45 186.4 180 57.2
TAR376G0205 Trochodendron aralioides HOM05D004285 ORTHO05D005176 5.4e-45 186.0 195 54.9
Oeu050306.1 Olea europaea HOM05D004285 ORTHO05D005176 7.1e-45 185.7 180 56.1
PSO170G3147 Papaver somniferum HOM05D004285 ORTHO05D005176 9.2e-45 185.3 176 59.1
PSO407G0164 Papaver somniferum HOM05D004285 ORTHO05D005176 9.2e-45 185.3 176 58.5
TAR628G0040 Trochodendron aralioides HOM05D004285 ORTHO05D005176 1.2e-44 184.9 208 51.9
Gohir.D04G032400 Gossypium hirsutum HOM05D004285 ORTHO05D005176 2.1e-44 184.1 202 54.0
Medtr3g096680 Medicago truncatula HOM05D004285 ORTHO05D005176 2.1e-44 184.1 231 49.4
AT5G09260 Arabidopsis thaliana HOM05D004285 ORTHO05D005176 2.7e-44 183.7 178 57.3
FAN22G0010 Fragaria x ananassa HOM05D004285 ORTHO05D005176 2.7e-44 183.7 192 55.7
arahy.Tifrunner.gnm1.ann1.054DCV Arachis hypogaea HOM05D004285 ORTHO05D005176 3.5e-44 183.3 178 56.7
arahy.Tifrunner.gnm1.ann1.GQS5IM Arachis hypogaea HOM05D004285 ORTHO05D005176 3.5e-44 183.3 178 56.7
PSO675G1889 Papaver somniferum HOM05D004285 ORTHO05D005176 4.6e-44 183.0 217 51.6
BcaNung04632 Brassica carinata HOM05D004285 ORTHO05D005176 6.0e-44 182.6 205 50.7
BcaNung04637 Brassica carinata HOM05D004285 ORTHO05D005176 6.0e-44 182.6 205 50.7
Ciclev10002389m.g Citrus clementina HOM05D004285 ORTHO05D005176 6.0e-44 182.6 223 51.6
Gohir.A05G382800 Gossypium hirsutum HOM05D004285 ORTHO05D005176 6.0e-44 182.6 202 53.5
TWI75G0304 Tripterygium wilfordii HOM05D004285 ORTHO05D005176 6.0e-44 182.6 188 54.3
C03p62560 Brassica napus HOM05D004285 ORTHO05D005176 7.8e-44 182.2 188 52.7
BolC3t18513H Brassica oleracea HOM05D004285 ORTHO05D005176 7.8e-44 182.2 188 52.7
CSS0033426 Camellia sinensis var. sinensis HOM05D004285 ORTHO05D005176 7.8e-44 182.2 223 51.6
Carub.0008s2465 Capsella rubella HOM05D004285 ORTHO05D005176 1.0e-43 181.8 181 54.7
BcaC01g02639 Brassica carinata HOM05D004285 ORTHO05D005176 1.7e-43 181.0 196 51.0
unitig_736.g22477 Utricularia gibba HOM05D004285 ORTHO05D005176 1.7e-43 181.0 178 55.6
Duzib264G0533 Durio zibethinus HOM05D004285 ORTHO05D005176 2.3e-43 180.6 177 55.4
ATR0706G129 Amborella trichopoda HOM05D004285 ORTHO05D005176 3.0e-43 180.3 180 56.1
AT5G63880 Arabidopsis thaliana HOM05D004285 ORTHO05D005176 3.9e-43 179.9 181 54.1
CARHR277780 Cardamine hirsuta HOM05D004285 ORTHO05D005176 5.1e-43 179.5 181 54.1
CDE08G1470 Ceratophyllum demersum HOM05D004285 ORTHO05D005176 5.1e-43 179.5 182 55.5
HanXRQChr09g0241311 Helianthus annuus HOM05D004285 ORTHO05D005176 5.1e-43 179.5 213 50.2
A06p30500 Brassica napus HOM05D004285 ORTHO05D005176 8.6e-43 178.7 196 51.0
ECA234G4310 Erigeron canadensis HOM05D004285 ORTHO05D005176 8.6e-43 178.7 208 50.5
Zm00001eb246180 Zea mays HOM05D004285 ORTHO05D005176 1.9e-42 177.6 189 55.0
CDE02G0727 Ceratophyllum demersum HOM05D004285 ORTHO05D005176 2.5e-42 177.2 176 56.2
Sp2g26940 Schrenkiella parvula HOM05D004285 ORTHO05D005176 2.5e-42 177.2 179 53.1
Aa31LG1G18000 Aethionema arabicum HOM05D004285 ORTHO05D005176 3.3e-42 176.8 213 50.2
Aqoxy6G00309 Aquilegia oxysepala HOM05D004285 ORTHO05D005176 3.3e-42 176.8 170 55.9
Zm00001eb183830 Zea mays HOM05D004285 ORTHO05D005176 3.3e-42 176.8 189 55.0
BcaB02g09769 Brassica carinata HOM05D004285 ORTHO05D005176 9.5e-42 175.3 209 49.8
DCAR_001476 Daucus carota HOM05D004285 ORTHO05D005176 9.5e-42 175.3 176 54.5
Thhalv10004899m.g Eutrema salsugineum HOM05D004285 ORTHO05D005176 9.5e-42 175.3 181 52.5
Actinidia20030 Actinidia chinensis HOM05D004285 ORTHO05D005176 8.1e-41 172.2 198 52.0
Haze_25379 Corylus avellana HOM05D004285 ORTHO05D005176 8.1e-41 172.2 212 49.1
Carub.0006s0781 Capsella rubella HOM05D004285 ORTHO05D005176 1.8e-40 171.0 207 49.8
Duzib187G0355 Durio zibethinus HOM05D004285 ORTHO05D005176 1.8e-40 171.0 226 49.1
Aa31LG3G17740 Aethionema arabicum HOM05D004285 ORTHO05D005176 4.0e-40 169.9 207 49.3
CiPaw.04G079800 Carya illinoinensis HOM05D004285 ORTHO05D005176 1.2e-39 168.3 178 53.9
BraA06t25999Z Brassica rapa HOM05D004285 ORTHO05D005176 2.0e-39 167.5 218 46.3
Eucgr.H05139 Eucalyptus grandis HOM05D004285 ORTHO05D005176 2.0e-39 167.5 207 49.3
THA.LOC104818421 Tarenaya hassleriana HOM05D004285 ORTHO05D005176 2.0e-39 167.5 212 48.1
THA.LOC104819347 Tarenaya hassleriana HOM05D004285 ORTHO05D005176 2.0e-39 167.5 201 50.2
BcaB08g37222 Brassica carinata HOM05D004285 ORTHO05D005176 2.6e-39 167.2 180 51.7
Sp6g34050 Schrenkiella parvula HOM05D004285 ORTHO05D005176 2.6e-39 167.2 186 52.2
Thhalv10014638m.g Eutrema salsugineum HOM05D004285 ORTHO05D005176 3.4e-39 166.8 212 48.6
Nn5g28435 Nelumbo nucifera HOM05D004285 ORTHO05D005176 3.4e-39 166.8 196 52.6
AL8G41110 Arabidopsis lyrata HOM05D004285 ORTHO05D005176 4.4e-39 166.4 181 50.8
Nitab4.5_0008205g0020 Nicotiana tabacum HOM05D004285 ORTHO05D005176 4.4e-39 166.4 182 53.3
A10p27950 Brassica napus HOM05D004285 ORTHO05D005176 1.3e-38 164.9 179 51.4
Solyc12g096650.2 Solanum lycopersicum HOM05D004285 ORTHO05D005176 1.7e-38 164.5 180 51.7
CAN.G566.38 Capsicum annuum HOM05D004285 ORTHO05D005176 2.2e-38 164.1 182 50.5
Os02g0596500 Oryza sativa ssp. japonica HOM05D004285 ORTHO05D005176 2.9e-38 163.7 199 51.3
FAN12G0473 Fragaria x ananassa HOM05D004285 ORTHO05D005176 4.9e-38 162.9 137 63.5
FAN10G2762 Fragaria x ananassa HOM05D004285 ORTHO05D005176 4.1e-37 159.8 180 51.1
FvH4_7g03820 Fragaria vesca HOM05D004285 ORTHO05D005176 3.5e-36 156.8 180 50.0
FAN06G1556 Fragaria x ananassa HOM05D004285 ORTHO05D005176 4.6e-36 156.4 180 50.0
C09p68090 Brassica napus HOM05D004285 ORTHO05D005176 6.0e-36 156.0 251 41.4
BraA10t44845Z Brassica rapa HOM05D004285 ORTHO05D005176 1.0e-35 155.2 200 46.5
ClCG04G001580 Citrullus lanatus HOM05D004285 ORTHO05D005176 1.7e-35 154.5 178 52.8
Oeu022909.3 Olea europaea HOM05D004285 ORTHO05D005176 5.1e-35 152.9 145 55.9
Nitab4.5_0000013g0100 Nicotiana tabacum HOM05D004285 ORTHO05D005176 1.1e-34 151.8 181 51.9
BolC9t59565H Brassica oleracea HOM05D004285 ORTHO05D005176 1.9e-34 151.0 201 45.3
Lsat_1_v5_gn_4_38601 Lactuca sativa HOM05D004285 ORTHO05D005176 7.3e-34 149.1 185 46.5
DCAR_020711 Daucus carota HOM05D004285 ORTHO05D006016 9.6e-34 148.7 175 50.9
Peaxi162Scf01205g00036 Petunia axillaris HOM05D004285 ORTHO05D005176 1.6e-33 147.9 187 49.7
Rhsim08G0027500 Rhododendron simsii HOM05D004285 ORTHO05D005176 1.6e-33 147.9 172 48.3
COL.COLO4_35812 Corchorus olitorius HOM05D003519 ORTHO05D004443 4.7e-33 146.4 139 56.1
CARHR204160 Cardamine hirsuta HOM05D004285 ORTHO05D005176 8.1e-33 145.6 170 49.4
Pp3c2_32100 Physcomitrium patens HOM05D004285 ORTHO05D005176 4.0e-32 143.3 182 48.9
Lj2A489T51 Lonicera japonica HOM05D004285 ORTHO05D005176 9.0e-32 142.1 131 58.0
Cre13.g589700 Chlamydomonas reinhardtii HOM05D004285 ORTHO05D005176 7.6e-31 139.0 189 46.0
vmacro18460 Vaccinium macrocarpon HOM05D004285 ORTHO05D005176 4.2e-29 133.3 180 46.7
CAN.G607.7 Capsicum annuum HOM05D004285 ORTHO05D005176 1.6e-28 131.3 137 54.0
FAN12G2135 Fragaria x ananassa HOM05D004285 ORTHO05D005176 5.6e-26 122.9 101 62.4
MBI18_g28836_MAGBIO Magnolia biondii HOM05D004285 ORTHO05D005176 5.6e-26 122.9 102 60.8
C09p68060 Brassica napus HOM05D004285 ORTHO05D005176 1.3e-25 121.7 134 50.0
C09p68120 Brassica napus HOM05D004285 ORTHO05D005176 1.3e-25 121.7 134 50.0
FAN03G0757 Fragaria x ananassa HOM05D004285 ORTHO05D005176 1.4e-24 118.2 138 48.6
AagrBONN_evm.TU.Sc2ySwM_344.1024 Anthoceros agrestis HOM05D004285 ORTHO05D005176 5.1e-19 99.8 88 62.5
MBI04_g07580_MAGBIO Magnolia biondii HOM05D004285 ORTHO05D005176 1.9e-18 97.8 105 53.3
AL697U10010 Arabidopsis lyrata HOM05D004285 ORTHO05D005176 2.8e-17 94.0 87 57.5
Cfa026504 Carpinus fangiana HOM05D004285 ORTHO05D005176 8.1e-17 92.4 183 37.7
Migut.G00927 Erythranthe guttata HOM05D004285 ORTHO05D005176 8.1e-17 92.4 87 57.5
PRCOL_00005830 Prasinoderma coloniale HOM05D004285 ORTHO05D005176 1.7e-14 84.7 223 34.1
MCO14G274 Micromonas commoda HOM05D004285 ORTHO05D005176 2.9e-14 84.0 153 37.9
Aa31LG4G3130 Aethionema arabicum HOM05D004285 ORTHO05D005176 7.1e-13 79.3 131 38.9
Haze_26675 Corylus avellana HOM05D004285 ORTHO05D005176 9.3e-13 79.0 186 31.7
AL1G38920 Arabidopsis lyrata HOM05D004285 ORTHO05D005176 1.8e-11 74.7 75 54.7
Actinidia06578 Actinidia chinensis HOM05D004285 ORTHO05D005176 3.7e-09 67.0 68 52.9
FAN07G1696 Fragaria x ananassa HOM05D004285 ORTHO05D005176 3.1e-08 63.9 205 32.2
MCO05G687 Micromonas commoda HOM05D001726 ORTHO05D001761 9.0e-08 62.4 175 30.9
C09p67470 Brassica napus HOM05D004285 ORTHO05D005176 4.5e-07 60.1 50 58.0
BolC9t59508H Brassica oleracea HOM05D004285 ORTHO05D005176 7.6e-07 59.3 93 37.6
CBR_g44400 Chara braunii HOM05D001726 ORTHO05D001761 1.7e-06 58.2 187 31.0
Prupe.7G215600 Prunus persica HOM05D001726 ORTHO05D001761 6.5e-06 56.2 175 28.6
RcHm_v2.0_Chr2g0092461 Rosa chinensis HOM05D001726 ORTHO05D001761 6.5e-06 56.2 179 30.2
FvH4_1g06720 Fragaria vesca HOM05D001726 ORTHO05D001761 8.4e-06 55.8 173 29.5
FAN19G1466 Fragaria x ananassa HOM05D001726 ORTHO05D001761 8.4e-06 55.8 173 29.5
FAN23G2685 Fragaria x ananassa HOM05D001726 ORTHO05D001761 8.4e-06 55.8 173 29.5
FAN26G0969 Fragaria x ananassa HOM05D001726 ORTHO05D001761 8.4e-06 55.8 173 29.5
FAN26G3035 Fragaria x ananassa HOM05D001726 ORTHO05D001761 8.4e-06 55.8 173 29.5
FAN28G2640 Fragaria x ananassa HOM05D001726 ORTHO05D001761 8.4e-06 55.8 173 29.5
Peaxi162Scf00354g00067 Petunia axillaris HOM05D001726 ORTHO05D001761 8.4e-06 55.8 175 28.0


User provided reference genes

Program Settings