Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g44943 Chara braunii HOM05D004877 ORTHO05D005942 7.7e-109 397.1 196 100.0
Pp3c5_15240 Physcomitrium patens HOM05D004877 ORTHO05D005942 4.9e-31 138.7 207 42.5
Mapoly0014s0033 Marchantia polymorpha HOM05D004877 ORTHO05D005942 1.6e-29 133.7 181 45.3
Pp3c6_16260 Physcomitrium patens HOM05D004877 ORTHO05D005942 3.5e-29 132.5 147 51.7
QL05p020530 Quercus lobata HOM05D004877 ORTHO05D005942 1.1e-27 127.5 146 48.6
Ah.01g005680 Amaranthus hybridus HOM05D004877 ORTHO05D005942 1.9e-27 126.7 147 47.6
TAR636G0039 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.9e-27 126.7 147 47.6
arahy.Tifrunner.gnm1.ann1.64XDM2 Arachis hypogaea HOM05D004877 ORTHO05D005942 3.3e-27 125.9 147 51.0
Lalb_Chr24g0396111 Lupinus albus HOM05D004877 ORTHO05D005942 3.3e-27 125.9 147 51.0
Manes.04G132600 Manihot esculenta HOM05D004877 ORTHO05D005942 3.3e-27 125.9 147 50.3
SEGI_39894 Sequoiadendron giganteum HOM05D004877 ORTHO05D005942 3.3e-27 125.9 167 44.3
arahy.Tifrunner.gnm1.ann1.4Y1F7A Arachis hypogaea HOM05D004877 ORTHO05D005942 1.3e-26 124.0 147 50.3
Potri.001G188300 Populus trichocarpa HOM05D004877 ORTHO05D005942 1.3e-26 124.0 147 48.3
GSVIVG01017013001 Vitis vinifera HOM05D004877 ORTHO05D005942 1.3e-26 124.0 146 49.3
AUR62022182 Chenopodium quinoa HOM05D004877 ORTHO05D005942 2.1e-26 123.2 181 42.0
Glyma.15G018900 Glycine max HOM05D004877 ORTHO05D005942 2.1e-26 123.2 148 51.4
SMO144G0168 Selaginella moellendorffii HOM05D004877 ORTHO05D005942 2.1e-26 123.2 149 48.3
Aqoxy7G01469 Aquilegia oxysepala HOM05D004877 ORTHO05D005942 2.8e-26 122.9 147 46.3
Glyma.13G355300 Glycine max HOM05D004877 ORTHO05D005942 2.8e-26 122.9 147 49.7
Manes.11G035000 Manihot esculenta HOM05D004877 ORTHO05D005942 2.8e-26 122.9 147 50.3
Phvul.005G167000 Phaseolus vulgaris HOM05D004877 ORTHO05D005942 4.8e-26 122.1 146 47.9
Ca_01157_v3 Cicer arietinum L. HOM05D004877 ORTHO05D005942 6.2e-26 121.7 148 50.7
Psat5g297080 Pisum sativum HOM05D004877 ORTHO05D005942 1.1e-25 120.9 148 50.0
Sc10g0007170 Simmondsia chinensis HOM05D004877 ORTHO05D005942 1.1e-25 120.9 149 47.7
ATR0705G205 Amborella trichopoda HOM05D004877 ORTHO05D005942 1.4e-25 120.6 146 46.6
CSS0014120 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 1.4e-25 120.6 147 48.3
CANSAT01G3179 Cannabis sativa HOM05D004877 ORTHO05D005942 1.4e-25 120.6 147 48.3
Lj3g0003786 Lotus japonicus HOM05D004877 ORTHO05D005942 1.4e-25 120.6 148 48.6
Sc10g0007240 Simmondsia chinensis HOM05D004877 ORTHO05D005942 1.4e-25 120.6 149 47.7
Lalb_Chr14g0373091 Lupinus albus HOM05D004877 ORTHO05D005942 1.8e-25 120.2 147 49.0
VMungo1080G0916 Vigna mungo HOM05D004877 ORTHO05D005942 1.8e-25 120.2 144 47.2
CiPaw.01G232800 Carya illinoinensis HOM05D004877 ORTHO05D005942 3.1e-25 119.4 147 46.3
AUR62031885 Chenopodium quinoa HOM05D004877 ORTHO05D005942 3.1e-25 119.4 146 45.2
CDE05G3078 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 4.0e-25 119.0 145 45.5
Hund06654 Selenicereus undatus HOM05D004877 ORTHO05D005942 6.9e-25 118.2 146 47.9
TWI18G0989 Tripterygium wilfordii HOM05D004877 ORTHO05D005942 6.9e-25 118.2 147 46.9
Cc04_g02700 Coffea canephora HOM05D004877 ORTHO05D005942 9.0e-25 117.9 146 47.3
Dinv37993 Davidia involucrata HOM05D004877 ORTHO05D005942 1.2e-24 117.5 147 48.3
Gohir.A02G118600 Gossypium hirsutum HOM05D004877 ORTHO05D005942 1.2e-24 117.5 146 44.5
BcaC05g28894 Brassica carinata HOM05D004877 ORTHO05D005942 1.5e-24 117.1 147 45.6
Nitab4.5_0003167g0040 Nicotiana tabacum HOM05D004877 ORTHO05D005942 1.5e-24 117.1 147 44.2
CiPaw.02G146900 Carya illinoinensis HOM05D004877 ORTHO05D005942 2.0e-24 116.7 147 46.3
Sabra01G0152700 Salix brachista HOM05D004877 ORTHO05D005942 2.0e-24 116.7 145 45.5
Lsat_1_v5_gn_4_99980 Lactuca sativa HOM05D004877 ORTHO05D005942 2.6e-24 116.3 203 38.4
MBI01_g42890_MAGBIO Magnolia biondii HOM05D004877 ORTHO05D005942 2.6e-24 116.3 160 42.5
Nitab4.5_0001755g0090 Nicotiana tabacum HOM05D004877 ORTHO05D005942 2.6e-24 116.3 147 43.5
PSO832G2273 Papaver somniferum HOM05D004877 ORTHO05D005942 2.6e-24 116.3 145 47.6
PGR102G2474 Punica granatum HOM05D004877 ORTHO05D005942 2.6e-24 116.3 145 46.2
Sp3g14680 Schrenkiella parvula HOM05D004877 ORTHO05D005942 2.6e-24 116.3 148 45.9
Atru.chr1.3498 Acer truncatum HOM05D004877 ORTHO05D005942 3.4e-24 115.9 147 45.6
CAN.G438.5 Capsicum annuum HOM05D004877 ORTHO05D005942 3.4e-24 115.9 147 42.2
Gohir.D03G059200 Gossypium hirsutum HOM05D004877 ORTHO05D005942 3.4e-24 115.9 146 44.5
COL.COLO4_30486 Corchorus olitorius HOM05D004877 ORTHO05D005942 4.5e-24 115.5 144 47.2
Gorai.003G063100 Gossypium raimondii HOM05D004877 ORTHO05D005942 4.5e-24 115.5 146 44.5
PGSC0003DMG400002534 Solanum tuberosum HOM05D004877 ORTHO05D005942 4.5e-24 115.5 147 42.9
CDE05G1429 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 5.8e-24 115.2 145 44.8
Peaxi162Scf00038g00844 Petunia axillaris HOM05D004877 ORTHO05D005942 5.8e-24 115.2 147 43.5
Hund00671 Selenicereus undatus HOM05D004877 ORTHO05D005942 5.8e-24 115.2 148 46.6
CSS0036359 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 7.6e-24 114.8 156 45.5
Medtr2g101270 Medicago truncatula HOM05D004877 ORTHO05D005942 7.6e-24 114.8 182 41.2
PSO173G0077 Papaver somniferum HOM05D004877 ORTHO05D005942 7.6e-24 114.8 145 46.9
Rhsim08G0226300 Rhododendron simsii HOM05D004877 ORTHO05D005942 7.6e-24 114.8 146 46.6
Ciclev10026016m.g Citrus clementina HOM05D004877 ORTHO05D005942 1.3e-23 114.0 155 48.4
THA.LOC104817965 Tarenaya hassleriana HOM05D004877 ORTHO05D005942 1.3e-23 114.0 148 45.3
TAR624G0319 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.3e-23 114.0 147 44.2
Eucgr.J02948 Eucalyptus grandis HOM05D004877 ORTHO05D005942 1.7e-23 113.6 147 46.9
MD09G1205800 Malus domestica HOM05D004877 ORTHO05D005942 1.7e-23 113.6 147 46.9
Sopen03g039700 Solanum pennellii HOM05D004877 ORTHO05D005942 1.7e-23 113.6 147 42.9
BcaB06g25724 Brassica carinata HOM05D004877 ORTHO05D005942 2.2e-23 113.2 149 45.6
ECA232G1650 Erigeron canadensis HOM05D004877 ORTHO05D005942 2.2e-23 113.2 146 44.5
Os01g0200500 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 2.2e-23 113.2 186 39.2
Solyc03g120880.4 Solanum lycopersicum HOM05D004877 ORTHO05D005942 2.2e-23 113.2 147 42.9
arahy.Tifrunner.gnm1.ann1.XV48AZ Arachis hypogaea HOM05D004877 ORTHO05D005942 2.9e-23 112.8 147 46.9
Thecc.06G097500 Theobroma cacao HOM05D004877 ORTHO05D005942 2.9e-23 112.8 145 44.8
MSTRG.22647 Avicennia marina HOM05D004877 ORTHO05D005942 3.8e-23 112.5 147 45.6
Actinidia32706 Actinidia chinensis HOM05D004877 ORTHO05D005942 4.9e-23 112.1 147 46.9
BraA05t22146Z Brassica rapa HOM05D004877 ORTHO05D005942 4.9e-23 112.1 144 44.4
Thhalv10021095m.g Eutrema salsugineum HOM05D004877 ORTHO05D005942 4.9e-23 112.1 148 45.3
SalBow1G2757 Salvia bowleyana HOM05D004877 ORTHO05D005942 4.9e-23 112.1 147 43.5
SalBow2G1418 Salvia bowleyana HOM05D004877 ORTHO05D005942 4.9e-23 112.1 147 43.5
TPR.G37257 Trifolium pratense HOM05D004877 ORTHO05D005942 4.9e-23 112.1 148 46.6
CsaV3_7G035410 Cucumis sativus L. HOM05D004877 ORTHO05D005942 6.5e-23 111.7 147 44.2
HanXRQChr09g0275881 Helianthus annuus HOM05D004877 ORTHO05D005942 6.5e-23 111.7 182 39.6
MD17G1186700 Malus domestica HOM05D004877 ORTHO05D005942 6.5e-23 111.7 148 45.3
vmacro18867 Vaccinium macrocarpon HOM05D004877 ORTHO05D005942 6.5e-23 111.7 147 44.9
Duzib235G0210 Durio zibethinus HOM05D004877 ORTHO05D005942 8.4e-23 111.3 145 44.1
Nn8g39120 Nelumbo nucifera HOM05D004877 ORTHO05D005942 8.4e-23 111.3 169 42.0
Zm00001eb337990 Zea mays HOM05D004877 ORTHO05D005942 8.4e-23 111.3 149 40.9
HanXRQChr16g0501211 Helianthus annuus HOM05D004877 ORTHO05D005942 1.1e-22 110.9 182 39.0
Prupe.3G061200 Prunus persica HOM05D004877 ORTHO05D005942 1.9e-22 110.2 147 44.9
Sed0013882 Sechium edule HOM05D004877 ORTHO05D005942 1.9e-22 110.2 146 43.8
AagrBONN_evm.TU.Sc2ySwM_117.2493 Anthoceros agrestis HOM05D004877 ORTHO05D005942 3.2e-22 109.4 147 44.9
MELO3C024450.2 Cucumis melo HOM05D004877 ORTHO05D005942 5.5e-22 108.6 147 42.9
CARHR091520 Cardamine hirsuta HOM05D004877 ORTHO05D005942 7.1e-22 108.2 148 43.2
FAN05G1125 Fragaria x ananassa HOM05D004877 ORTHO05D005942 7.1e-22 108.2 145 46.2
FAN14G1716 Fragaria x ananassa HOM05D004877 ORTHO05D005942 7.1e-22 108.2 145 46.2
Carub.0003s1606 Capsella rubella HOM05D004877 ORTHO05D005942 9.3e-22 107.8 149 43.0
Dinv30451 Davidia involucrata HOM05D004877 ORTHO05D005942 9.3e-22 107.8 148 43.9
FvH4_6g32170 Fragaria vesca HOM05D004877 ORTHO05D005942 9.3e-22 107.8 145 46.2
Lj9A511G47 Lonicera japonica HOM05D004877 ORTHO05D005942 9.3e-22 107.8 149 46.3
unitig_46.g18560 Utricularia gibba HOM05D004877 ORTHO05D005942 9.3e-22 107.8 160 40.6
ClCG09G000060 Citrullus lanatus HOM05D004877 ORTHO05D005942 1.2e-21 107.5 147 43.5
FAN02G1875 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.2e-21 107.5 147 44.9
AT3G16310 Arabidopsis thaliana HOM05D004877 ORTHO05D005942 1.6e-21 107.1 148 43.9
Oeu001891.1 Olea europaea HOM05D004877 ORTHO05D005942 1.6e-21 107.1 144 42.4
AL3G29060 Arabidopsis lyrata HOM05D004877 ORTHO05D005942 2.7e-21 106.3 148 43.9
MSTRG.11036 Avicennia marina HOM05D004877 ORTHO05D005942 2.7e-21 106.3 144 43.8
Duzib192G0168 Durio zibethinus HOM05D004877 ORTHO05D005942 4.6e-21 105.5 145 42.8
FAN09G1375 Fragaria x ananassa HOM05D004877 ORTHO05D005942 4.6e-21 105.5 145 45.5
arahy.Tifrunner.gnm1.ann1.NE95XN Arachis hypogaea HOM05D004877 ORTHO05D005942 6.0e-21 105.1 163 42.3
arahy.Tifrunner.gnm1.ann1.WG6QSW Arachis hypogaea HOM05D004877 ORTHO05D005942 6.0e-21 105.1 163 42.3
RcHm_v2.0_Chr2g0140061 Rosa chinensis HOM05D004877 ORTHO05D005942 6.0e-21 105.1 145 44.8
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 1.0e-20 104.4 137 44.5
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 1.0e-20 104.4 137 44.5
Gohir.D10G068000 Gossypium hirsutum HOM05D004877 ORTHO05D005942 1.3e-20 104.0 226 32.7
Sed0014944 Sechium edule HOM05D004877 ORTHO05D005942 1.3e-20 104.0 148 41.9
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 3.0e-20 102.8 143 42.0
DCAR_016196 Daucus carota HOM05D004877 ORTHO05D005942 3.9e-20 102.4 146 42.5
Gohir.A10G066900 Gossypium hirsutum HOM05D004877 ORTHO05D005942 3.9e-20 102.4 146 42.5
Gorai.011G072600 Gossypium raimondii HOM05D004877 ORTHO05D005942 3.9e-20 102.4 145 41.4
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 3.9e-20 102.4 145 42.8
Migut.I00909 Erythranthe guttata HOM05D004877 ORTHO05D005942 1.1e-19 100.9 135 43.7
Gohir.D03G059150 Gossypium hirsutum HOM05D004877 ORTHO05D005942 1.1e-19 100.9 133 44.4
Os05g0520100 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 4.3e-19 99.0 167 38.3
Cpa.g.c40702 Carica papaya HOM05D004877 ORTHO05D005942 9.7e-19 97.8 69 63.8
unitig_37.g12259 Utricularia gibba HOM05D004877 ORTHO05D005942 1.3e-18 97.4 75 60.0
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 1.6e-18 97.1 134 43.3
Zm00001eb293750 Zea mays HOM05D004877 ORTHO05D005942 2.2e-18 96.7 171 39.8
Peaxi162Scf00894g00009 Petunia axillaris HOM05D004877 ORTHO05D005942 4.8e-18 95.5 75 57.3
EL10Ac9g22101 Beta vulgaris HOM05D004877 ORTHO05D005942 1.4e-17 94.0 192 33.3
Haze_15829 Corylus avellana HOM05D004877 ORTHO05D005942 3.4e-16 89.4 197 33.5
Cre12.g553050 Chlamydomonas reinhardtii HOM05D004877 ORTHO05D005942 1.9e-14 83.6 144 33.3
SEGI_33810 Sequoiadendron giganteum HOM05D004877 ORTHO05D000002 9.4e-14 81.3 122 40.2
Peaxi162Scf11517g00001 Petunia axillaris HOM05D004877 ORTHO05D005942 2.1e-13 80.1 54 63.0
Lj9A524G48 Lonicera japonica HOM05D004877 ORTHO05D005942 3.9e-12 75.9 125 42.4
PRCOL_00002288 Prasinoderma coloniale HOM05D004877 ORTHO05D005942 3.9e-12 75.9 142 31.0
PSO675G8939 Papaver somniferum HOM05D004877 ORTHO05D005942 6.7e-12 75.1 76 47.4
Pp3c1_40780 Physcomitrium patens HOM05D004877 ORTHO05D005942 4.8e-10 68.9 154 31.2
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 4.1e-09 65.9 72 45.8
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 2.6e-08 63.2 65 44.6
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 3.4e-08 62.8 67 44.8
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 1.0e-07 61.2 65 43.1


User provided reference genes

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