Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g44539 Chara braunii HOM05D005045 ORTHO05D006386 0.0e+00 2240.3 1203 100.0
Mapoly0027s0186 Marchantia polymorpha HOM05D005045 ORTHO05D006386 3.5e-244 849.4 1272 41.4
Pp3c10_3760 Physcomitrium patens HOM05D005045 ORTHO05D006386 1.3e-227 794.3 1260 39.2
Potri.001G320300 Populus trichocarpa HOM05D005045 ORTHO05D006386 2.5e-226 790.0 1263 39.9
CiPaw.01G116800 Carya illinoinensis HOM05D005045 ORTHO05D006386 2.1e-225 786.9 1273 39.8
Glyma.18G002400 Glycine max HOM05D005045 ORTHO05D006386 3.1e-224 783.1 1268 39.6
AagrBONN_evm.TU.Sc2ySwM_368.995 Anthoceros agrestis HOM05D002013 ORTHO05D002293 5.2e-224 782.3 1273 39.9
Cpa.g.sc157.48 Carica papaya HOM05D005045 ORTHO05D006386 2.0e-223 780.4 1262 39.5
Cfa014961 Carpinus fangiana HOM05D005045 ORTHO05D006386 4.4e-223 779.2 1264 40.0
TWI53G1845 Tripterygium wilfordii HOM05D005045 ORTHO05D006386 7.5e-223 778.5 1263 39.9
ATR0561G148 Amborella trichopoda HOM05D005045 ORTHO05D006386 6.4e-222 775.4 1266 39.6
Ciclev10004166m.g Citrus clementina HOM05D005045 ORTHO05D006386 1.4e-221 774.2 1273 39.7
Lj6g0005100 Lotus japonicus HOM05D005045 ORTHO05D006386 7.1e-221 771.9 1270 39.4
Lalb_Chr11g0075871 Lupinus albus HOM05D005045 ORTHO05D006386 1.3e-219 767.7 1269 39.2
Migut.G00767 Erythranthe guttata HOM05D005045 ORTHO05D006386 1.1e-218 764.6 1269 39.3
Duzib151G0179 Durio zibethinus HOM05D005045 ORTHO05D006386 1.9e-218 763.8 1232 40.1
Sed0026716 Sechium edule HOM05D005045 ORTHO05D006386 2.5e-218 763.5 1270 39.2
Thhalv10016151m.g Eutrema salsugineum HOM05D005045 ORTHO05D006386 6.2e-217 758.8 1282 39.1
Phvul.001G266800 Phaseolus vulgaris HOM05D005045 ORTHO05D006386 1.4e-216 757.7 1279 38.2
EL10Ac3g07454 Beta vulgaris HOM05D005045 ORTHO05D006386 8.9e-216 755.0 1265 38.9
Thecc.04G195000 Theobroma cacao HOM05D005045 ORTHO05D006386 1.2e-215 754.6 1265 38.7
Dinv38168 Davidia involucrata HOM05D005045 ORTHO05D006386 1.5e-215 754.2 1263 38.2
Actinidia28996 Actinidia chinensis HOM05D005045 ORTHO05D006386 7.6e-215 751.9 1266 38.3
THA.LOC104826172 Tarenaya hassleriana HOM05D005045 ORTHO05D006386 7.6e-215 751.9 1271 38.2
Manes.03G144200 Manihot esculenta HOM05D005045 ORTHO05D006386 9.9e-215 751.5 1270 38.8
Nn3g20083 Nelumbo nucifera HOM05D005045 ORTHO05D006386 8.4e-214 748.4 1284 39.0
HPP92_024209 Vanilla planifolia HOM05D005045 ORTHO05D006386 1.4e-213 747.7 1278 38.8
MELO3C006292.2 Cucumis melo HOM05D005045 ORTHO05D006386 5.4e-213 745.7 1272 38.8
Nitab4.5_0002260g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 1.2e-212 744.6 1268 39.4
Aqoxy2G03932 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 1.6e-212 744.2 1268 38.7
PGR142G0016 Punica granatum HOM05D005045 ORTHO05D006386 2.7e-212 743.4 1238 38.9
PSO017G0058 Papaver somniferum HOM05D005045 ORTHO05D006386 7.8e-212 741.9 1265 38.7
Carub.0004s1329 Capsella rubella HOM05D005045 ORTHO05D006386 1.7e-211 740.7 1276 37.7
CsaV3_3G010730 Cucumis sativus L. HOM05D005045 ORTHO05D006386 1.5e-210 737.6 1272 38.8
CAN.G765.38 Capsicum annuum HOM05D005045 ORTHO05D006386 2.5e-210 736.9 1263 39.4
FvH4_4g13300 Fragaria vesca HOM05D005045 ORTHO05D006386 7.3e-210 735.3 1263 37.3
Sabra16G0202900 Salix brachista HOM05D005045 ORTHO05D006386 1.4e-208 731.1 1391 36.7
Solyc05g053800.3 Solanum lycopersicum HOM05D005045 ORTHO05D006386 1.5e-207 727.6 1263 38.8
Sopen05g032270 Solanum pennellii HOM05D005045 ORTHO05D006386 2.0e-207 727.2 1263 38.6
Sp4g14350 Schrenkiella parvula HOM05D005045 ORTHO05D006386 7.6e-207 725.3 1277 37.8
Lsat_1_v5_gn_6_59140 Lactuca sativa HOM05D005045 ORTHO05D006386 9.9e-207 724.9 1270 38.3
Psat5g100040 Pisum sativum HOM05D005045 ORTHO05D006386 1.3e-206 724.5 1263 37.7
AT2G31970 Arabidopsis thaliana HOM05D005045 ORTHO05D006386 1.7e-206 724.2 1277 37.5
TPR.G25379 Trifolium pratense HOM05D005045 ORTHO05D006386 2.2e-206 723.8 1284 38.4
AL4G27320 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 4.9e-206 722.6 1277 37.7
RcHm_v2.0_Chr4g0413591 Rosa chinensis HOM05D005045 ORTHO05D006386 8.4e-206 721.8 1268 37.7
ECA233G4939 Erigeron canadensis HOM05D005045 ORTHO05D006386 1.4e-205 721.1 1263 37.7
Peaxi162Scf00423g00410 Petunia axillaris HOM05D005045 ORTHO05D006386 7.1e-205 718.8 1271 38.1
FAN12G2321 Fragaria x ananassa HOM05D005045 ORTHO05D006386 1.6e-204 717.6 1302 36.5
MSTRG.9796 Avicennia marina HOM05D005045 ORTHO05D006386 7.8e-204 715.3 1266 38.1
Prupe.1G165000 Prunus persica HOM05D005045 ORTHO05D006386 3.9e-203 713.0 1276 37.6
SalBow8G0828 Salvia bowleyana HOM05D005045 ORTHO05D006386 5.1e-203 712.6 1277 38.1
VMungo1383G3533 Vigna mungo HOM05D005045 ORTHO05D006386 6.6e-203 712.2 1278 37.9
Medtr3g084300 Medicago truncatula HOM05D005045 ORTHO05D006386 1.5e-202 711.1 1271 38.2
Cc03_g08470 Coffea canephora HOM05D005045 ORTHO05D006386 5.6e-202 709.1 1270 37.7
ClCG05G003110 Citrullus lanatus HOM05D005045 ORTHO05D006386 1.3e-201 708.0 1320 37.2
BcaB01g04004 Brassica carinata HOM05D005045 ORTHO05D006386 1.6e-201 707.6 1282 38.1
CSS0020032 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 2.1e-201 707.2 1263 38.6
Aa31LG5G5040 Aethionema arabicum HOM05D005045 ORTHO05D006386 3.6e-201 706.4 1302 36.5
MD05G1230300 Malus domestica HOM05D005045 ORTHO05D006386 2.0e-199 700.7 1274 37.4
HanXRQChr02g0058481 Helianthus annuus HOM05D005045 ORTHO05D006386 7.6e-199 698.7 1266 36.7
Sc19g0007360 Simmondsia chinensis HOM05D005045 ORTHO05D006386 7.6e-199 698.7 1143 38.4
A03p17990 Brassica napus HOM05D005045 ORTHO05D006386 4.9e-198 696.0 1301 37.3
FAN07G1455 Fragaria x ananassa HOM05D005045 ORTHO05D006386 1.1e-197 694.9 1257 37.1
FAN22G0494 Fragaria x ananassa HOM05D005045 ORTHO05D006386 1.4e-197 694.5 1318 35.8
Gohir.D02G022400 Gossypium hirsutum HOM05D005045 ORTHO05D006386 1.9e-197 694.1 1273 38.0
Gorai.005G027800 Gossypium raimondii HOM05D005045 ORTHO05D006386 2.4e-197 693.7 1273 38.0
Gohir.A02G019100 Gossypium hirsutum HOM05D005045 ORTHO05D006386 7.1e-197 692.2 1273 37.8
C03p21030 Brassica napus HOM05D005045 ORTHO05D006386 2.1e-196 690.6 1298 37.5
BolC3t14484H Brassica oleracea HOM05D005045 ORTHO05D006386 2.7e-196 690.3 1298 37.5
BraA03t11060Z Brassica rapa HOM05D005045 ORTHO05D006386 1.3e-195 688.0 1323 36.7
SGA_v2.0_scaffold27G11679 Striga asiatica HOM05D005045 ORTHO05D006386 3.3e-194 683.3 1274 37.6
DCAR_005488 Daucus carota HOM05D005045 ORTHO05D006386 6.2e-193 679.1 1263 36.5
Eucgr.H00025 Eucalyptus grandis HOM05D005045 ORTHO05D006386 1.3e-190 671.4 1141 38.3
Atru.chr4.1578 Acer truncatum HOM05D005045 ORTHO05D006386 1.1e-189 668.3 1270 37.1
Haze_11653 Corylus avellana HOM05D005045 ORTHO05D006386 1.6e-185 654.4 1496 34.2
CDE02G0777 Ceratophyllum demersum HOM05D005045 ORTHO05D006386 1.4e-184 651.4 1258 36.2
Rhsim02G0061900 Rhododendron simsii HOM05D005045 ORTHO05D006386 1.1e-176 625.2 1293 34.5
SMO356G0717 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 1.8e-171 607.8 1264 35.9
vmacro15566 Vaccinium macrocarpon HOM05D005045 ORTHO05D006386 3.7e-169 600.1 1314 34.2
SMO217G0009 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 2.6e-151 540.8 1154 34.8
MCO01G132 Micromonas commoda HOM05D005045 ORTHO05D006386 3.7e-129 467.2 1332 30.7
Zm00001eb181120 Zea mays HOM05D005045 ORTHO05D006386 1.6e-127 461.8 1061 32.8
SEGI_03959 Sequoiadendron giganteum HOM05D005045 ORTHO05D006386 3.5e-127 460.7 760 38.2
CARHR125720 Cardamine hirsuta HOM05D005045 ORTHO05D006386 5.0e-118 430.3 694 39.6
Os02g0497500 Oryza sativa ssp. japonica HOM05D005045 ORTHO05D006386 2.0e-114 418.3 673 40.3
Cre03.g192550 Chlamydomonas reinhardtii HOM05D005045 ORTHO05D006386 1.9e-112 411.8 1308 29.9
Nitab4.5_0003358g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 3.5e-111 407.5 1015 32.1
AUR62020863 Chenopodium quinoa HOM05D005045 ORTHO05D006386 4.3e-109 400.6 877 33.4
MBI07_g27365_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 9.5e-109 399.4 695 36.7
PRCOL_00000463 Prasinoderma coloniale HOM05D005045 ORTHO05D006386 8.9e-107 392.9 1286 29.6
unitig_0.g1961 Utricularia gibba HOM05D005045 ORTHO05D006386 2.1e-103 381.7 922 32.3
BcaNung07126 Brassica carinata HOM05D005045 ORTHO05D006386 3.5e-103 380.9 738 36.7
Oeu034322.3 Olea europaea HOM05D005045 ORTHO05D006386 7.8e-103 379.8 843 32.9
Ca_16407_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 1.0e-102 379.4 570 41.6
Ca_16416_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 1.0e-102 379.4 570 41.6
Ah.04g149410 Amaranthus hybridus HOM05D005045 ORTHO05D006386 1.1e-101 375.9 1059 29.7
Lju912A1G33 Lonicera japonica HOM05D005045 ORTHO05D006386 3.9e-94 350.9 624 37.3
arahy.Tifrunner.gnm1.ann1.2Y4S4L Arachis hypogaea HOM05D005045 ORTHO05D006386 1.5e-93 349.0 644 37.6
arahy.Tifrunner.gnm1.ann1.RK3EBX Arachis hypogaea HOM05D005045 ORTHO05D006386 1.2e-92 345.9 646 37.2
MBI07_g27366_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 3.6e-92 344.4 558 39.6
Cfa022909 Carpinus fangiana HOM05D005045 ORTHO05D006386 5.8e-90 337.0 1273 25.0
TAR362G1154 Trochodendron aralioides HOM05D005045 ORTHO05D006386 1.7e-89 335.5 676 35.9
Ca_16406_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 4.9e-89 334.0 609 37.3
BcaC01g05925 Brassica carinata HOM05D005045 ORTHO05D006386 6.4e-89 333.6 734 34.5
CSS0025820 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 2.4e-80 305.1 295 58.6
AUR62018556 Chenopodium quinoa HOM05D005045 ORTHO05D006386 3.5e-79 301.2 304 56.2
FAN17G1875 Fragaria x ananassa HOM05D005045 ORTHO05D006386 1.3e-76 292.7 240 63.8
COL.COLO4_20233 Corchorus olitorius HOM05D005045 ORTHO05D006386 1.1e-75 289.7 199 73.4
SHI26063 Sapria himalayana HOM05D005045 ORTHO05D006386 1.8e-75 288.9 738 33.1
arahy.Tifrunner.gnm1.ann1.KK4CMR Arachis hypogaea HOM05D005045 ORTHO05D006386 9.0e-75 286.6 363 47.4
QL06p025788 Quercus lobata HOM05D005045 ORTHO05D006386 3.0e-70 271.6 221 64.7
Lj6C381G5 Lonicera japonica HOM05D005045 ORTHO05D006386 8.7e-70 270.0 579 35.8
Ah.04g149400 Amaranthus hybridus HOM05D005045 ORTHO05D006386 5.6e-69 267.3 187 71.7
Ca_16414_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 4.0e-67 261.2 221 62.0
unitig_0.g1960 Utricularia gibba HOM05D005045 ORTHO05D006386 4.9e-65 254.2 224 58.9
AUR62020862 Chenopodium quinoa HOM05D005045 ORTHO05D006386 7.9e-63 246.9 433 39.0
Aqoxy430s001 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 7.7e-58 230.3 442 36.9
AL80U10080 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 1.0e-57 229.9 130 86.2
Lju912C0T2 Lonicera japonica HOM05D005045 ORTHO05D006386 2.1e-47 195.7 472 33.5
BcaNung07125 Brassica carinata HOM05D005045 ORTHO05D006386 5.9e-42 177.6 299 39.8
Actinidia11455 Actinidia chinensis HOM05D005045 ORTHO05D006386 2.1e-39 169.1 119 76.5
Actinidia11457 Actinidia chinensis HOM05D005045 ORTHO05D006386 2.7e-31 142.1 106 71.7
Nitab4.5_0003358g0090 Nicotiana tabacum HOM05D005045 ORTHO05D006386 8.0e-31 140.6 107 71.0
Nitab4.5_0003358g0100 Nicotiana tabacum HOM05D005045 ORTHO05D006386 1.8e-27 129.4 70 84.3
Rhsim02G0061800 Rhododendron simsii HOM05D005045 ORTHO05D006386 1.8e-27 129.4 70 85.7
Lj6A381G13 Lonicera japonica HOM05D005045 ORTHO05D006386 6.1e-23 114.4 227 32.2
Prupe.1G180400 Prunus persica HOM05D005045 ORTHO05D006386 3.0e-22 112.1 147 42.9
COL.COLO4_20231 Corchorus olitorius HOM05D005045 ORTHO05D006386 2.0e-21 109.4 454 27.8
Lsat_1_v5_gn_2_13081 Lactuca sativa HOM05D005045 ORTHO05D006386 1.4e-19 103.2 64 79.7
BcaB01g04007 Brassica carinata HOM05D005045 ORTHO05D006386 9.1e-19 100.5 405 24.4
Lsat_1_v5_gn_3_72140 Lactuca sativa HOM05D005045 ORTHO05D006386 4.5e-18 98.2 64 71.9
Lj6A381G12 Lonicera japonica HOM05D005045 ORTHO05D006386 2.3e-17 95.9 123 43.1
Lsat_1_v5_gn_5_127521 Lactuca sativa HOM05D005045 ORTHO05D006386 1.5e-16 93.2 106 52.8
Lsat_1_v5_gn_6_56800 Lactuca sativa HOM05D000112 ORTHO05D001918 3.4e-13 82.0 53 73.6
Ca_16415_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 3.7e-12 78.6 414 23.4
SHI26076 Sapria himalayana HOM05D005045 ORTHO05D006386 4.9e-12 78.2 45 91.1
Lsat_1_v5_gn_8_35100 Lactuca sativa HOM05D000324 ORTHO05D010724 2.8e-07 62.4 58 63.8
Lsat_1_v5_gn_4_149801 Lactuca sativa HOM05D000324 ORTHO05D010724 1.4e-06 60.1 56 64.3
Lsat_1_v5_gn_9_35481 Lactuca sativa HOM05D000324 ORTHO05D010724 1.4e-06 60.1 56 64.3
Lsat_1_v5_gn_1_5060 Lactuca sativa HOM05D001876 ORTHO05D002002 5.2e-06 58.2 33 84.8


User provided reference genes

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