Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g41264 Chara braunii HOM05D004857 ORTHO05D005663 0.0e+00 1348.6 692 100.0
Mapoly0117s0005 Marchantia polymorpha HOM05D004857 ORTHO05D005663 6.0e-156 555.4 699 50.5
SEGI_40202 Sequoiadendron giganteum HOM05D004857 ORTHO05D005663 2.9e-150 536.6 697 48.6
CSS0030162 Camellia sinensis var. sinensis HOM05D004857 ORTHO05D005663 3.6e-145 519.6 612 51.6
Rhsim05G0001900 Rhododendron simsii HOM05D004857 ORTHO05D005663 1.8e-144 517.3 595 52.9
Dinv44702 Davidia involucrata HOM05D004857 ORTHO05D005663 3.2e-141 506.5 611 51.7
Actinidia39614 Actinidia chinensis HOM05D004857 ORTHO05D005663 2.1e-140 503.8 617 51.1
vmacro17076 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 6.0e-140 502.3 596 52.2
ATR0681G246 Amborella trichopoda HOM05D004857 ORTHO05D005663 1.3e-139 501.1 600 52.2
Gorai.009G038200 Gossypium raimondii HOM05D004857 ORTHO05D005663 1.7e-139 500.7 601 51.1
Nn7g37725 Nelumbo nucifera HOM05D004857 ORTHO05D005663 5.1e-139 499.2 600 50.8
QL11p002992 Quercus lobata HOM05D004857 ORTHO05D005663 5.1e-139 499.2 614 50.3
arahy.Tifrunner.gnm1.ann1.N970BB Arachis hypogaea HOM05D004857 ORTHO05D005663 8.7e-139 498.4 613 51.2
Gohir.D05G037700 Gossypium hirsutum HOM05D004857 ORTHO05D005663 1.1e-138 498.0 601 50.9
GSVIVG01015011001 Vitis vinifera HOM05D004857 ORTHO05D005663 1.1e-138 498.0 597 52.1
arahy.Tifrunner.gnm1.ann1.N9ATPP Arachis hypogaea HOM05D004857 ORTHO05D005663 2.5e-138 496.9 609 50.7
Gohir.A05G036200 Gossypium hirsutum HOM05D004857 ORTHO05D005663 3.3e-138 496.5 599 51.1
CDE05G0310 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 4.3e-138 496.1 598 51.2
CiPaw.03G200100 Carya illinoinensis HOM05D004857 ORTHO05D005663 5.6e-138 495.7 585 52.3
TAR383G0334 Trochodendron aralioides HOM05D004857 ORTHO05D005663 1.6e-137 494.2 612 49.8
VMungo1309G0172 Vigna mungo HOM05D004857 ORTHO05D005663 4.8e-137 492.7 599 50.6
Cfa002936 Carpinus fangiana HOM05D004857 ORTHO05D005663 6.2e-137 492.3 616 50.2
Phvul.009G223400 Phaseolus vulgaris HOM05D004857 ORTHO05D005663 6.2e-137 492.3 603 50.1
Thecc.09G070000 Theobroma cacao HOM05D004857 ORTHO05D005663 1.1e-136 491.5 610 50.5
MBI19_g37995_MAGBIO Magnolia biondii HOM05D004857 ORTHO05D005663 1.4e-136 491.1 615 50.4
Manes.16G090200 Manihot esculenta HOM05D004857 ORTHO05D005663 1.4e-136 491.1 579 52.7
Lj4A920T60 Lonicera japonica HOM05D004857 ORTHO05D005663 1.8e-136 490.7 604 51.3
Ciclev10007866m.g Citrus clementina HOM05D004857 ORTHO05D005663 3.1e-136 490.0 578 51.4
Duzib168G0723 Durio zibethinus HOM05D004857 ORTHO05D005663 3.1e-136 490.0 578 52.8
PSO104G0255 Papaver somniferum HOM05D004857 ORTHO05D005663 3.1e-136 490.0 570 54.0
PGSC0003DMG401015931 Solanum tuberosum HOM05D004857 ORTHO05D005663 4.0e-136 489.6 607 50.4
vmacro03340 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 4.0e-136 489.6 612 51.0
COL.COLO4_21204 Corchorus olitorius HOM05D004857 ORTHO05D005663 5.3e-136 489.2 627 49.6
Nitab4.5_0001114g0050 Nicotiana tabacum HOM05D004857 ORTHO05D005663 5.3e-136 489.2 609 49.8
Sc08g0005030 Simmondsia chinensis HOM05D004857 ORTHO05D005663 6.9e-136 488.8 577 52.2
Aqoxy6G02713 Aquilegia oxysepala HOM05D004857 ORTHO05D005663 1.5e-135 487.6 596 50.3
Glyma.09G074100 Glycine max HOM05D004857 ORTHO05D005663 1.5e-135 487.6 602 49.8
Nitab4.5_0002665g0010 Nicotiana tabacum HOM05D004857 ORTHO05D005663 1.5e-135 487.6 609 49.8
MSTRG.19426 Avicennia marina HOM05D004857 ORTHO05D005663 3.4e-135 486.5 601 50.4
Eucgr.C00765 Eucalyptus grandis HOM05D004857 ORTHO05D005663 5.8e-135 485.7 610 50.3
CAN.G457.2 Capsicum annuum HOM05D004857 ORTHO05D005663 7.6e-135 485.3 608 50.2
CsaV3_3G038370 Cucumis sativus L. HOM05D004857 ORTHO05D005663 9.9e-135 485.0 612 50.2
Duzib187G1561 Durio zibethinus HOM05D004857 ORTHO05D005663 1.3e-134 484.6 607 50.6
Lj6g0010651 Lotus japonicus HOM05D004857 ORTHO05D005663 1.3e-134 484.6 616 50.2
Hund21824 Selenicereus undatus HOM05D004857 ORTHO05D005663 1.3e-134 484.6 610 50.0
Ca_02281_v3 Cicer arietinum L. HOM05D004857 ORTHO05D005663 1.7e-134 484.2 606 50.2
Glyma.15G183100 Glycine max HOM05D004857 ORTHO05D005663 1.7e-134 484.2 607 49.4
MELO3C009580.2 Cucumis melo HOM05D004857 ORTHO05D005663 2.2e-134 483.8 612 49.8
Lsat_1_v5_gn_5_138760 Lactuca sativa HOM05D004857 ORTHO05D005663 3.8e-134 483.0 563 53.1
PGR142G2122 Punica granatum HOM05D004857 ORTHO05D005663 3.8e-134 483.0 610 49.3
Sed0019967 Sechium edule HOM05D004857 ORTHO05D005663 3.8e-134 483.0 626 49.2
Migut.J00878 Erythranthe guttata HOM05D004857 ORTHO05D005663 6.4e-134 482.3 592 50.2
Lalb_Chr08g0232851 Lupinus albus HOM05D004857 ORTHO05D005663 6.4e-134 482.3 610 50.0
Psat1g138640 Pisum sativum HOM05D004857 ORTHO05D005663 1.1e-133 481.5 598 50.2
THA.LOC104819454 Tarenaya hassleriana HOM05D004857 ORTHO05D005663 1.9e-133 480.7 595 51.3
MD15G1223900 Malus domestica HOM05D004857 ORTHO05D005663 2.4e-133 480.3 606 49.7
Sopen07g006280 Solanum pennellii HOM05D004857 ORTHO05D005663 2.4e-133 480.3 607 50.6
PSO421G0319 Papaver somniferum HOM05D004857 ORTHO05D005663 4.2e-133 479.6 578 53.3
HanXRQChr12g0355141 Helianthus annuus HOM05D004857 ORTHO05D005663 5.4e-133 479.2 602 51.3
Sabra18G0057000 Salix brachista HOM05D004857 ORTHO05D005663 5.4e-133 479.2 579 52.3
Cc06_g12730 Coffea canephora HOM05D004857 ORTHO05D005663 7.1e-133 478.8 583 50.4
Solyc07g017490.3 Solanum lycopersicum HOM05D004857 ORTHO05D005663 1.6e-132 477.6 607 50.4
CANSAT56G1105 Cannabis sativa HOM05D004857 ORTHO05D005663 2.1e-132 477.2 593 50.9
SalBow6G1194 Salvia bowleyana HOM05D004857 ORTHO05D005663 2.1e-132 477.2 582 51.0
Medtr2g044200 Medicago truncatula HOM05D004857 ORTHO05D005663 2.7e-132 476.9 611 50.1
Potri.018G064100 Populus trichocarpa HOM05D004857 ORTHO05D005663 4.6e-132 476.1 575 51.8
Actinidia30259 Actinidia chinensis HOM05D004857 ORTHO05D005663 1.8e-131 474.2 562 52.1
HPP92_017869 Vanilla planifolia HOM05D004857 ORTHO05D005663 1.8e-131 474.2 597 50.4
MD02G1102700 Malus domestica HOM05D004857 ORTHO05D005663 6.7e-131 472.2 613 49.6
SHI27983 Sapria himalayana HOM05D004857 ORTHO05D005663 3.3e-130 469.9 592 50.5
TWI34G1843 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 3.3e-130 469.9 609 49.8
Thhalv10001246m.g Eutrema salsugineum HOM05D004857 ORTHO05D005663 3.1e-128 463.4 602 49.2
Sp4g07340 Schrenkiella parvula HOM05D004857 ORTHO05D005663 3.1e-128 463.4 613 49.8
CDE05G0890 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 6.9e-128 462.2 594 49.2
AUR62006828 Chenopodium quinoa HOM05D004857 ORTHO05D005663 1.2e-127 461.5 576 50.0
EL10Ac4g09573 Beta vulgaris HOM05D004857 ORTHO05D005663 2.0e-127 460.7 610 48.0
FAN23G0125 Fragaria x ananassa HOM05D004857 ORTHO05D005663 2.0e-127 460.7 595 48.7
Oeu041809.2 Olea europaea HOM05D004857 ORTHO05D005663 3.8e-126 456.4 670 45.5
FvH4_1g09440 Fragaria vesca HOM05D004857 ORTHO05D005663 4.9e-126 456.1 586 49.0
FAN26G0201 Fragaria x ananassa HOM05D004857 ORTHO05D005663 4.9e-126 456.1 588 49.0
FAN19G2563 Fragaria x ananassa HOM05D004857 ORTHO05D005663 6.4e-126 455.7 587 49.1
FAN28G2840 Fragaria x ananassa HOM05D004857 ORTHO05D005663 6.4e-126 455.7 594 48.1
RcHm_v2.0_Chr2g0095991 Rosa chinensis HOM05D004857 ORTHO05D005663 6.4e-126 455.7 571 51.3
TWI32G0792 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 6.4e-126 455.7 616 49.7
AL4G19270 Arabidopsis lyrata HOM05D004857 ORTHO05D005663 1.4e-125 454.5 566 50.4
Carub.0004s0646 Capsella rubella HOM05D004857 ORTHO05D005663 1.4e-125 454.5 570 51.2
Zm00001eb405000 Zea mays HOM05D004857 ORTHO05D005663 1.9e-125 454.1 580 49.0
AT2G26460 Arabidopsis thaliana HOM05D004857 ORTHO05D005663 2.4e-125 453.8 627 48.0
Os11g0146700 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 2.4e-125 453.8 559 49.7
BcaC07g40818 Brassica carinata HOM05D004857 ORTHO05D005663 1.9e-122 444.1 604 48.7
C08p38110 Brassica napus HOM05D004857 ORTHO05D005663 1.9e-122 444.1 604 48.7
BolC8t51386H Brassica oleracea HOM05D004857 ORTHO05D005663 1.9e-122 444.1 604 48.7
AUR62000486 Chenopodium quinoa HOM05D004857 ORTHO05D005663 5.6e-122 442.6 566 49.8
arahy.Tifrunner.gnm1.ann1.I7JLU4 Arachis hypogaea HOM05D004857 ORTHO05D005663 9.6e-122 441.8 614 48.9
FAN26G1404 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.3e-121 441.4 615 46.8
A09p55180 Brassica napus HOM05D004857 ORTHO05D005663 1.6e-121 441.0 600 48.2
BcaB08g35315 Brassica carinata HOM05D004857 ORTHO05D005663 3.7e-121 439.9 578 49.1
BraA09t40926Z Brassica rapa HOM05D004857 ORTHO05D005663 8.1e-121 438.7 600 48.0
CARHR114530 Cardamine hirsuta HOM05D004857 ORTHO05D005663 6.9e-120 435.6 592 48.0
Aa31LG5G9410 Aethionema arabicum HOM05D004857 ORTHO05D005663 1.2e-119 434.9 622 47.4
DCAR_024780 Daucus carota HOM05D004857 ORTHO05D005663 2.0e-119 434.1 545 48.8
ClCG10G017920 Citrullus lanatus HOM05D004857 ORTHO05D005663 4.5e-119 433.0 714 42.7
TPR.G27074 Trifolium pratense HOM05D004857 ORTHO05D005663 2.5e-117 427.2 529 49.3
Prupe.7G191600 Prunus persica HOM05D004857 ORTHO05D005663 9.3e-117 425.2 545 47.9
SGA_v2.0_scaffold31G12698 Striga asiatica HOM05D004857 ORTHO05D005663 2.1e-116 424.1 550 48.0
SMO266G0005 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 7.9e-116 422.2 603 47.1
Oeu000275.2 Olea europaea HOM05D004857 ORTHO05D005663 1.1e-112 411.8 774 39.5
AagrBONN_evm.TU.Sc2ySwM_344.4798 Anthoceros agrestis HOM05D004857 ORTHO05D005663 3.4e-111 406.8 602 45.8
Os12g0143400 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 2.3e-107 394.0 564 46.5
Peaxi162Scf01184g10017 Petunia axillaris HOM05D004857 ORTHO05D005663 4.3e-106 389.8 588 44.0
Zm00001eb163350 Zea mays HOM05D004857 ORTHO05D005663 1.5e-103 381.3 502 47.0
Haze_26072 Corylus avellana HOM05D004857 ORTHO05D005663 1.1e-90 338.6 457 47.5
Pp3c19_4680 Physcomitrium patens HOM05D004857 ORTHO05D005663 3.6e-84 317.0 331 55.9
BcaB08g35309 Brassica carinata HOM05D004857 ORTHO05D005663 7.5e-74 282.7 518 41.1
BcaB08g35312 Brassica carinata HOM05D004857 ORTHO05D005663 7.5e-74 282.7 518 41.1
BcaB08g35314 Brassica carinata HOM05D004857 ORTHO05D005663 7.5e-74 282.7 518 41.1
Cpa.g.sc82.61 Carica papaya HOM05D004857 ORTHO05D005663 2.3e-67 261.2 397 46.9
ECA234G1433 Erigeron canadensis HOM05D000959 ORTHO05D000775 9.8e-66 255.8 250 57.2
unitig_699.g19262 Utricularia gibba HOM05D001486 ORTHO05D003845 1.4e-59 235.3 155 77.4
Atru.chr7.1770 Acer truncatum HOM05D004857 ORTHO05D005663 5.2e-59 233.4 250 55.6
arahy.Tifrunner.gnm1.ann1.97VZCN Arachis hypogaea HOM05D004857 ORTHO05D005663 1.2e-58 232.3 160 75.6
Lsat_1_v5_gn_7_48600 Lactuca sativa HOM05D004857 ORTHO05D005663 2.0e-58 231.5 171 71.3
ECA234G2807 Erigeron canadensis HOM05D000593 ORTHO05D000562 5.4e-56 223.4 313 45.7
BcaB08g35308 Brassica carinata HOM05D004857 ORTHO05D005663 7.8e-55 219.5 239 53.1
HanXRQChr12g0354251 Helianthus annuus HOM05D004857 ORTHO05D005663 3.9e-54 217.2 569 33.9
HanXRQChr12g0355211 Helianthus annuus HOM05D004857 ORTHO05D005663 1.5e-50 205.3 125 84.0
unitig_699.g19261 Utricularia gibba HOM05D004857 ORTHO05D005663 5.4e-48 196.8 330 43.3
SMO270G0044 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 1.1e-45 189.1 148 67.6
SMO270G0035 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 1.5e-45 188.7 308 43.5
Cpa.g.sc3709.1 Carica papaya HOM05D004857 ORTHO05D005663 1.4e-43 182.2 166 59.6
Cre16.g688750 Chlamydomonas reinhardtii HOM05D004857 ORTHO05D005663 5.6e-37 160.2 657 28.0
Lsat_1_v5_gn_5_77300 Lactuca sativa HOM05D004857 ORTHO05D005663 8.7e-30 136.3 113 64.6
CAN.G457.3 Capsicum annuum HOM05D004857 ORTHO05D005663 1.9e-29 135.2 114 64.9
BcaB08g35313 Brassica carinata HOM05D004857 ORTHO05D005663 2.5e-29 134.8 278 35.3
Atru.chr7.1769 Acer truncatum HOM05D004857 ORTHO05D005663 4.3e-29 134.0 160 45.6
Nn2g14232 Nelumbo nucifera HOM05D004857 ORTHO05D005663 1.1e-27 129.4 193 45.6
TAR626G1635 Trochodendron aralioides HOM05D001862 ORTHO05D005663 1.6e-23 115.5 162 45.7
BcaB08g35310 Brassica carinata HOM05D004857 ORTHO05D005663 5.1e-22 110.5 89 62.9
Dinv32013 Davidia involucrata HOM05D004857 ORTHO05D005663 1.6e-20 105.5 67 77.6
MCO14G054 Micromonas commoda HOM05D004857 ORTHO05D005663 5.8e-18 97.1 246 34.6
QL05p089308 Quercus lobata HOM05D004857 ORTHO05D005663 9.9e-18 96.3 67 70.1
TPR.G21223 Trifolium pratense HOM05D004857 ORTHO05D005663 6.7e-14 83.6 55 70.9
CAN.G1728.2 Capsicum annuum HOM05D004857 ORTHO05D005663 7.4e-13 80.1 70 61.4
Actinidia02202 Actinidia chinensis HOM05D004857 ORTHO05D005663 1.6e-12 79.0 78 59.0
Lsat_1_v5_gn_7_48580 Lactuca sativa HOM05D004857 ORTHO05D005663 1.6e-12 79.0 155 39.4
Lsat_1_v5_gn_5_77280 Lactuca sativa HOM05D004857 ORTHO05D005663 4.0e-11 74.3 158 38.0
ECA247G2383 Erigeron canadensis HOM05D004857 ORTHO05D005663 6.9e-11 73.6 95 43.2
BcaB08g35311 Brassica carinata HOM05D004857 ORTHO05D005663 1.9e-08 65.5 41 75.6
Actinidia27556 Actinidia chinensis HOM05D004857 ORTHO05D005663 2.4e-08 65.1 64 67.2
Lsat_1_v5_gn_3_37601 Lactuca sativa HOM05D004857 ORTHO05D005663 4.2e-08 64.3 125 36.8
vmacro05712 Vaccinium macrocarpon HOM05D006033 ORTHO05D005663 5.5e-08 63.9 48 75.0
TAR626G1095 Trochodendron aralioides HOM05D004857 ORTHO05D005663 7.9e-07 60.1 75 49.3


User provided reference genes

Program Settings