Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g34968 Chara braunii HOM05D004035 ORTHO05D004631 0.0e+00 2327.0 1562 100.0
Mapoly0160s0027 Marchantia polymorpha HOM05D004035 ORTHO05D004631 3.3e-146 524.2 1527 29.1
Pp3c10_5300 Physcomitrium patens HOM05D004035 ORTHO05D004631 3.9e-139 500.7 1531 29.0
CSS0025574 Camellia sinensis var. sinensis HOM05D004035 ORTHO05D004631 1.1e-120 439.5 1536 26.8
Manes.02G093700 Manihot esculenta HOM05D004035 ORTHO05D004631 1.4e-120 439.1 1538 26.9
Thecc.01G133800 Theobroma cacao HOM05D004035 ORTHO05D004631 1.8e-120 438.7 1532 26.8
Actinidia12124 Actinidia chinensis HOM05D004035 ORTHO05D004631 9.1e-120 436.4 1535 27.0
CANSAT01G0227 Cannabis sativa HOM05D004035 ORTHO05D004631 4.5e-119 434.1 1529 26.4
TAR376G0366 Trochodendron aralioides HOM05D004035 ORTHO05D004631 1.0e-118 433.0 1532 26.6
Actinidia36560 Actinidia chinensis HOM05D004035 ORTHO05D004631 1.7e-118 432.2 1521 26.8
Rhsim02G0182400 Rhododendron simsii HOM05D004035 ORTHO05D004631 1.7e-118 432.2 1534 26.7
Prupe.7G154500 Prunus persica HOM05D004035 ORTHO05D004631 2.9e-118 431.4 1526 26.0
QL06p046086 Quercus lobata HOM05D004035 ORTHO05D004631 5.0e-118 430.6 1531 26.3
Sed0003321 Sechium edule HOM05D004035 ORTHO05D004631 5.0e-118 430.6 1525 26.2
Solyc07g056660.4 Solanum lycopersicum HOM05D004035 ORTHO05D004631 1.1e-117 429.5 1523 26.7
MELO3C017565.2 Cucumis melo HOM05D004035 ORTHO05D004631 1.9e-117 428.7 1517 26.4
Glyma.11G068300 Glycine max HOM05D004035 ORTHO05D004631 1.9e-117 428.7 1527 26.1
Sopen07g030000 Solanum pennellii HOM05D004035 ORTHO05D004631 1.9e-117 428.7 1523 26.7
COL.COLO4_22081 Corchorus olitorius HOM05D004035 ORTHO05D004631 2.5e-117 428.3 1531 26.1
Glyma.01G176000 Glycine max HOM05D004035 ORTHO05D004631 2.5e-117 428.3 1522 25.8
Phvul.002G030300 Phaseolus vulgaris HOM05D004035 ORTHO05D004631 2.5e-117 428.3 1521 26.0
Aqoxy6G01113 Aquilegia oxysepala HOM05D004035 ORTHO05D004631 4.2e-117 427.6 1521 26.3
Gohir.D11G190900 Gossypium hirsutum HOM05D004035 ORTHO05D004631 4.2e-117 427.6 1527 25.9
Nitab4.5_0000178g0040 Nicotiana tabacum HOM05D004035 ORTHO05D004631 4.2e-117 427.6 1533 26.3
Nn1g04984 Nelumbo nucifera HOM05D004035 ORTHO05D004631 5.5e-117 427.2 1530 25.7
Duzib147G1708 Durio zibethinus HOM05D004035 ORTHO05D004631 7.2e-117 426.8 1544 26.3
MD02G1147600 Malus domestica HOM05D004035 ORTHO05D004631 8.0e-116 423.3 1524 26.0
CARHR244970 Cardamine hirsuta HOM05D004035 ORTHO05D004631 1.4e-115 422.5 1529 25.6
Atru.chr3.574 Acer truncatum HOM05D004035 ORTHO05D004631 1.8e-115 422.2 1536 26.1
Gorai.007G203400 Gossypium raimondii HOM05D004035 ORTHO05D004631 1.8e-115 422.2 1528 25.8
Lj2g0023524 Lotus japonicus HOM05D004035 ORTHO05D004631 1.8e-115 422.2 1527 25.9
Migut.H00988 Erythranthe guttata HOM05D004035 ORTHO05D004631 5.2e-115 420.6 1526 26.1
Gohir.A11G184400 Gossypium hirsutum HOM05D004035 ORTHO05D004631 5.2e-115 420.6 1527 25.9
ClCG07G009230 Citrullus lanatus HOM05D004035 ORTHO05D004631 6.8e-115 420.2 1514 26.4
TAR362G0832 Trochodendron aralioides HOM05D004035 ORTHO05D004631 6.8e-115 420.2 1526 25.8
VMungo1215G2866 Vigna mungo HOM05D004035 ORTHO05D004631 8.8e-115 419.9 1521 26.0
Thhalv10024305m.g Eutrema salsugineum HOM05D004035 ORTHO05D004631 1.2e-114 419.5 1529 25.8
Lj2C453G20 Lonicera japonica HOM05D004035 ORTHO05D004631 1.2e-114 419.5 1523 26.1
Carub.0007s0370 Capsella rubella HOM05D004035 ORTHO05D004631 2.6e-114 418.3 1528 25.7
Sp7g34290 Schrenkiella parvula HOM05D004035 ORTHO05D004631 9.8e-114 416.4 1528 25.8
ATR0743G236 Amborella trichopoda HOM05D004035 ORTHO05D004631 1.7e-113 415.6 1528 26.8
Ciclev10024797m.g Citrus clementina HOM05D004035 ORTHO05D004631 1.7e-113 415.6 1543 25.7
TPR.G22289 Trifolium pratense HOM05D004035 ORTHO05D004631 2.8e-113 414.8 1527 25.5
MD15G1261900 Malus domestica HOM05D004035 ORTHO05D004631 3.7e-113 414.5 1530 25.7
Eucgr.H01269 Eucalyptus grandis HOM05D004035 ORTHO05D004631 2.4e-112 411.8 1524 27.4
PGR102G3072 Punica granatum HOM05D004035 ORTHO05D004631 3.1e-112 411.4 1548 26.0
AL7G14420 Arabidopsis lyrata HOM05D004035 ORTHO05D004631 4.1e-112 411.0 1528 25.5
Cc03_g03620 Coffea canephora HOM05D004035 ORTHO05D004631 7.0e-112 410.2 1535 26.1
FvH4_1g13311 Fragaria vesca HOM05D004035 ORTHO05D004631 7.0e-112 410.2 1524 25.6
SGA_v2.0_scaffold276G46626 Striga asiatica HOM05D004035 ORTHO05D004631 2.0e-111 408.7 1537 25.6
BraA03t15502Z Brassica rapa HOM05D004035 ORTHO05D004631 2.7e-111 408.3 1528 25.7
Ca_22279_v3 Cicer arietinum L. HOM05D004035 ORTHO05D004631 2.7e-111 408.3 1540 25.8
Ah.02g125200 Amaranthus hybridus HOM05D004035 ORTHO05D004631 3.5e-111 407.9 1533 25.9
PSO017G4184 Papaver somniferum HOM05D004035 ORTHO05D004631 3.5e-111 407.9 1523 25.9
A03p64370 Brassica napus HOM05D004035 ORTHO05D004631 4.5e-111 407.5 1528 25.7
RcHm_v2.0_Chr2g0101581 Rosa chinensis HOM05D004035 ORTHO05D004631 4.5e-111 407.5 1525 25.6
Aa31LG6G13430 Aethionema arabicum HOM05D004035 ORTHO05D004631 1.0e-110 406.4 1540 25.3
BolC7t46602H Brassica oleracea HOM05D004035 ORTHO05D004631 1.0e-110 406.4 1528 25.8
arahy.Tifrunner.gnm1.ann1.GM6JEQ Arachis hypogaea HOM05D004035 ORTHO05D004631 1.3e-110 406.0 1528 25.5
CAN.G1003.4 Capsicum annuum HOM05D004035 ORTHO05D004631 1.3e-110 406.0 1527 25.9
Potri.005G123000 Populus trichocarpa HOM05D004035 ORTHO05D004631 1.3e-110 406.0 1529 25.9
LjContig00448g0016984 Lotus japonicus HOM05D004035 ORTHO05D004631 2.3e-110 405.2 1533 25.4
PSO675G4195 Papaver somniferum HOM05D004035 ORTHO05D004631 2.9e-110 404.8 1535 25.9
AT4G36630 Arabidopsis thaliana HOM05D004035 ORTHO05D004631 3.8e-110 404.4 1529 25.2
FAN26G1872 Fragaria x ananassa HOM05D004035 ORTHO05D004631 5.0e-110 404.1 1558 25.5
Psat2g159680 Pisum sativum HOM05D004035 ORTHO05D004631 5.0e-110 404.1 1519 25.1
arahy.Tifrunner.gnm1.ann1.6E6Z42 Arachis hypogaea HOM05D004035 ORTHO05D004631 6.6e-110 403.7 1528 25.4
Ca_24847_v3 Cicer arietinum L. HOM05D004035 ORTHO05D004631 6.6e-110 403.7 1532 25.8
C07p61810 Brassica napus HOM05D004035 ORTHO05D004631 8.6e-110 403.3 1528 25.7
FAN19G0080 Fragaria x ananassa HOM05D004035 ORTHO05D004631 8.6e-110 403.3 1527 25.6
FAN28G2497 Fragaria x ananassa HOM05D004035 ORTHO05D004631 8.6e-110 403.3 1536 25.5
Gorai.003G015100 Gossypium raimondii HOM05D004035 ORTHO05D004631 8.6e-110 403.3 1526 24.8
Hma1.2p1_0400F.1_g144430 Hydrangea macrophylla HOM05D004035 ORTHO05D004631 8.6e-110 403.3 1539 25.4
Lalb_Chr09g0322391 Lupinus albus HOM05D004035 ORTHO05D004631 1.5e-109 402.5 1528 25.7
Psat4g092560 Pisum sativum HOM05D004035 ORTHO05D004631 1.5e-109 402.5 1531 25.3
EL10Ac6g15563 Beta vulgaris HOM05D004035 ORTHO05D004631 2.5e-109 401.7 1528 25.6
TWI73G0243 Tripterygium wilfordii HOM05D004035 ORTHO05D004631 5.6e-109 400.6 1539 25.3
HanXRQChr16g0530441 Helianthus annuus HOM05D004035 ORTHO05D004631 7.2e-109 400.2 1531 25.2
PSO541G3635 Papaver somniferum HOM05D004035 ORTHO05D004631 2.1e-108 398.7 1533 25.6
Sopen02g029920 Solanum pennellii HOM05D004035 ORTHO05D004631 2.1e-108 398.7 1521 26.1
Solyc02g085220.4 Solanum lycopersicum HOM05D004035 ORTHO05D004631 3.6e-108 397.9 1521 26.2
Potri.007G025700 Populus trichocarpa HOM05D004035 ORTHO05D004631 8.0e-108 396.7 1534 25.7
AUR62007565 Chenopodium quinoa HOM05D004035 ORTHO05D004631 1.0e-107 396.4 1533 25.7
AUR62004050 Chenopodium quinoa HOM05D004035 ORTHO05D004631 1.4e-107 396.0 1528 25.9
Lj1g0016074 Lotus japonicus HOM05D004035 ORTHO05D004631 1.8e-107 395.6 1536 25.3
Medtr8g077680 Medicago truncatula HOM05D004035 ORTHO05D004631 1.8e-107 395.6 1521 25.1
GSVIVG01018960001 Vitis vinifera HOM05D004035 ORTHO05D004631 1.2e-106 392.9 1400 26.7
PSO837G0008 Papaver somniferum HOM05D004035 ORTHO05D004631 1.5e-106 392.5 1522 25.2
Sc03g0002970 Simmondsia chinensis HOM05D004035 ORTHO05D004631 1.5e-106 392.5 1041 29.2
TPR.G34978 Trifolium pratense HOM05D004035 ORTHO05D004631 1.5e-106 392.5 1530 24.8
Lsat_1_v5_gn_3_76401 Lactuca sativa HOM05D004035 ORTHO05D004631 1.3e-105 389.4 1512 25.3
Nn7g37554 Nelumbo nucifera HOM05D004035 ORTHO05D004631 2.9e-105 388.3 1522 25.6
Gohir.A02G165200 Gossypium hirsutum HOM05D004035 ORTHO05D004631 1.4e-104 386.0 1027 28.9
ECA246G3379 Erigeron canadensis HOM05D004035 ORTHO05D004631 9.2e-104 383.3 1514 25.2
Sabra07G0022700 Salix brachista HOM05D004035 ORTHO05D004631 5.9e-103 380.6 1525 25.7
Os03g0715500 Oryza sativa ssp. japonica HOM05D004035 ORTHO05D004631 8.6e-102 376.7 1523 25.1
CDE09G0689 Ceratophyllum demersum HOM05D004035 ORTHO05D004631 1.6e-100 372.5 1523 24.8
HanXRQChr09g0261471 Helianthus annuus HOM05D004035 ORTHO05D004631 2.1e-100 372.1 1538 24.5
DCAR_017291 Daucus carota HOM05D004035 ORTHO05D004631 3.6e-100 371.3 1041 28.7
DCAR_025943 Daucus carota HOM05D004035 ORTHO05D004631 3.6e-100 371.3 1533 25.2
CiPaw.01G038000 Carya illinoinensis HOM05D004035 ORTHO05D004631 1.0e-99 369.8 1546 25.2
Zm00001eb055180 Zea mays HOM05D004035 ORTHO05D004631 6.8e-99 367.1 1417 25.8
arahy.Tifrunner.gnm1.ann1.JC6DGE Arachis hypogaea HOM05D004035 ORTHO05D004631 8.9e-99 366.7 1526 24.6
Peaxi162Scf00366g00121 Petunia axillaris HOM05D004035 ORTHO05D004631 1.5e-98 365.9 1534 25.3
ECA232G2840 Erigeron canadensis HOM05D004035 ORTHO05D004631 5.8e-98 364.0 1531 24.4
arahy.Tifrunner.gnm1.ann1.ZDS5RA Arachis hypogaea HOM05D004035 ORTHO05D004631 1.1e-96 359.8 1526 24.5
Cfa004306 Carpinus fangiana HOM05D004035 ORTHO05D004631 1.0e-94 353.2 1539 25.1
Nitab4.5_0001385g0050 Nicotiana tabacum HOM05D004035 ORTHO05D004631 1.9e-93 349.0 1533 24.7
Gohir.D03G014800 Gossypium hirsutum HOM05D004035 ORTHO05D004631 1.2e-92 346.3 1531 23.6
Medtr5g020140 Medicago truncatula HOM05D004035 ORTHO05D004631 1.4e-91 342.8 859 30.6
Ca_22265_v3 Cicer arietinum L. HOM05D004035 ORTHO05D004631 8.9e-91 340.1 1531 24.3
Dinv39986 Davidia involucrata HOM05D004035 ORTHO05D004631 4.9e-89 334.3 1524 24.3
SMO145G0075 Selaginella moellendorffii HOM05D004035 ORTHO05D004631 1.3e-86 326.2 447 42.1
Lalb_Chr16g0388281 Lupinus albus HOM05D004035 ORTHO05D004631 2.3e-86 325.5 1345 24.9
Haze_15090 Corylus avellana HOM05D004035 ORTHO05D004631 5.6e-85 320.9 1543 23.8
SalBow8G0583 Salvia bowleyana HOM05D004035 ORTHO05D004631 7.3e-85 320.5 1535 24.4
vmacro11086 Vaccinium macrocarpon HOM05D004035 ORTHO05D004631 8.1e-84 317.0 1628 24.2
Lsat_1_v5_gn_4_152080 Lactuca sativa HOM05D004035 ORTHO05D004631 5.4e-80 304.3 1536 22.3
A08p22280 Brassica napus HOM05D004035 ORTHO05D004631 4.3e-77 294.7 938 27.1
Oeu042265.1 Olea europaea HOM05D004035 ORTHO05D004631 7.3e-77 293.9 454 36.3
BcaB03g12382 Brassica carinata HOM05D004035 ORTHO05D004631 4.7e-76 291.2 415 36.9
RcHm_v2.0_Chr2g0101101 Rosa chinensis HOM05D004035 ORTHO05D004631 1.4e-75 289.7 409 38.6
CsaV3_UNG172360 Cucumis sativus L. HOM05D004035 ORTHO05D004631 1.4e-67 263.1 1252 24.5
BolC3t20256H Brassica oleracea HOM05D004035 ORTHO05D004631 9.0e-59 233.8 298 40.3
Hund16431 Selenicereus undatus HOM05D004035 ORTHO05D004631 4.5e-58 231.5 357 34.5
Thecc.01G036000 Theobroma cacao HOM05D004035 ORTHO05D004631 3.8e-57 228.4 505 33.3
C03p80030 Brassica napus HOM05D004035 ORTHO05D004631 7.1e-56 224.2 806 27.4
BcaC01g00456 Brassica carinata HOM05D004035 ORTHO05D004631 3.9e-54 218.4 913 26.1
CsaV3_4G005000 Cucumis sativus L. HOM05D004035 ORTHO05D004631 3.9e-54 218.4 309 36.9
MBI07_g11484_MAGBIO Magnolia biondii HOM05D004035 ORTHO05D004631 6.9e-51 207.6 1215 22.9
SEGI_00418 Sequoiadendron giganteum HOM05D004035 ORTHO05D004631 7.9e-47 194.1 261 40.2
SEGI_13313 Sequoiadendron giganteum HOM05D004035 ORTHO05D004631 1.2e-42 180.3 863 24.3
unitig_52.g17587 Utricularia gibba HOM05D004035 ORTHO05D004631 2.6e-42 179.1 1197 22.7
HPP92_004246 Vanilla planifolia HOM05D004035 ORTHO05D004631 2.6e-42 179.1 186 46.2
Cpa.g.sc1294.3 Carica papaya HOM05D004035 ORTHO05D004631 1.3e-41 176.8 483 31.9
CsaV3_4G004990 Cucumis sativus L. HOM05D004035 ORTHO05D004631 6.5e-41 174.5 685 27.0
AagrBONN_evm.TU.Sc2ySwM_340.480 Anthoceros agrestis HOM05D004035 ORTHO05D004631 7.9e-39 167.5 992 23.4
Cpa.g.sc202.3 Carica papaya HOM05D004035 ORTHO05D004631 1.3e-36 160.2 261 34.1
MBI07_g05961_MAGBIO Magnolia biondii HOM05D000455 ORTHO05D000434 2.6e-34 152.5 261 33.0
Oeu033646.1 Olea europaea HOM05D004035 ORTHO05D004631 1.1e-32 147.1 229 37.1
PGSC0003DMG400003507 Solanum tuberosum HOM05D004035 ORTHO05D004631 4.6e-31 141.7 854 22.4
Oeu042264.1 Olea europaea HOM05D004035 ORTHO05D004631 7.4e-29 134.4 871 21.0
PRCOL_00006719 Prasinoderma coloniale HOM05D004035 ORTHO05D004631 3.7e-28 132.1 802 23.8
HPP92_004247 Vanilla planifolia HOM05D004035 ORTHO05D004631 1.8e-27 129.8 118 55.9
TPR.G13573 Trifolium pratense HOM05D004035 ORTHO05D004631 4.5e-26 125.2 145 43.4
Cpa.g.sc1294.1 Carica papaya HOM05D004035 ORTHO05D004631 2.2e-25 122.9 114 53.5
PGSC0003DMG400027646 Solanum tuberosum HOM05D004035 ORTHO05D004631 2.9e-25 122.5 118 50.0
Thecc.01G035900 Theobroma cacao HOM05D004035 ORTHO05D004631 3.8e-25 122.1 152 45.4
Cfa025411 Carpinus fangiana HOM05D004035 ORTHO05D004631 1.1e-24 120.6 772 23.1
CAN.G358.86 Capsicum annuum HOM05D004035 ORTHO05D004631 1.2e-23 117.1 122 48.4
RcHm_v2.0_Chr2g0101111 Rosa chinensis HOM05D004035 ORTHO05D004631 2.0e-21 109.8 828 21.4
Cre06.g278124 Chlamydomonas reinhardtii HOM05D004035 ORTHO05D004631 1.8e-19 103.2 211 36.0
TPR.G13579 Trifolium pratense HOM05D004035 ORTHO05D004631 5.9e-18 98.2 96 50.0
Lalb_Chr16g0388271 Lupinus albus HOM05D004035 ORTHO05D004631 2.5e-16 92.8 188 27.1
BraA08t34187Z Brassica rapa HOM05D004035 ORTHO05D004631 1.6e-15 90.1 349 24.6
CsaV3_4G004980 Cucumis sativus L. HOM05D004035 ORTHO05D004631 2.1e-15 89.7 87 49.4
BolC3t20257H Brassica oleracea HOM05D004035 ORTHO05D004631 2.2e-12 79.7 481 23.5
SHI32099 Sapria himalayana HOM05D004035 ORTHO05D004631 6.3e-12 78.2 387 26.6
SHI32097 Sapria himalayana HOM05D000002 ORTHO05D000001 7.7e-10 71.2 89 40.4
TPR.G13585 Trifolium pratense HOM05D004035 ORTHO05D004631 1.7e-09 70.1 85 45.9
Sopen05g010460 Solanum pennellii HOM05D005380 ORTHO05D006601 1.1e-08 67.4 256 25.0
AUR62042012 Chenopodium quinoa HOM05D005380 ORTHO05D006601 1.9e-08 66.6 265 27.9
QL11p017903 Quercus lobata HOM05D005380 ORTHO05D006601 1.4e-06 60.5 113 29.2
TWI09G1549 Tripterygium wilfordii HOM05D005380 ORTHO05D006601 1.8e-06 60.1 113 30.1
Cfa000719 Carpinus fangiana HOM05D005380 ORTHO05D006601 2.3e-06 59.7 113 29.2
Gorai.011G051400 Gossypium raimondii HOM05D005380 ORTHO05D006601 3.0e-06 59.3 113 29.2
CANSAT80G1059 Cannabis sativa HOM05D005380 ORTHO05D006601 5.2e-06 58.5 113 30.1
C03p80040 Brassica napus HOM05D004035 ORTHO05D004631 8.8e-06 57.8 87 41.4
BolC3t20258H Brassica oleracea HOM05D004035 ORTHO05D004631 8.8e-06 57.8 87 41.4
Sabra03G0108200 Salix brachista HOM05D005380 ORTHO05D006601 8.8e-06 57.8 113 28.3


User provided reference genes

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