Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g34518 Chara braunii HOM05D004863 ORTHO05D005802 1.4e-72 276.2 137 100.0
CANSAT32G0002 Cannabis sativa HOM05D004863 ORTHO05D005802 1.7e-17 93.2 75 60.0
Prupe.2G254800 Prunus persica HOM05D004863 ORTHO05D005802 8.3e-17 90.9 75 57.3
Manes.10G009400 Manihot esculenta HOM05D004863 ORTHO05D005802 1.1e-16 90.5 75 57.3
Actinidia00966 Actinidia chinensis HOM05D004863 ORTHO05D005802 1.4e-16 90.1 102 48.0
Thhalv10013002m.g Eutrema salsugineum HOM05D004863 ORTHO05D005802 1.4e-16 90.1 75 56.0
Sp6g37360 Schrenkiella parvula HOM05D004863 ORTHO05D005802 1.4e-16 90.1 75 56.0
HPP92_003692 Vanilla planifolia HOM05D004863 ORTHO05D005802 1.4e-16 90.1 101 46.5
Carub.0006s0439 Capsella rubella HOM05D004863 ORTHO05D005802 1.8e-16 89.7 82 52.4
CARHR207780 Cardamine hirsuta HOM05D004863 ORTHO05D005802 1.8e-16 89.7 82 52.4
arahy.Tifrunner.gnm1.ann1.U87T4F Arachis hypogaea HOM05D004863 ORTHO05D005802 3.1e-16 89.0 82 52.4
MELO3C018373.2 Cucumis melo HOM05D004863 ORTHO05D005802 3.1e-16 89.0 75 56.0
Hma1.2p1_3100F.1_g332690 Hydrangea macrophylla HOM05D004863 ORTHO05D005802 3.1e-16 89.0 75 56.0
Phvul.007G217900 Phaseolus vulgaris HOM05D004863 ORTHO05D005802 3.1e-16 89.0 75 56.0
PGR142G2246 Punica granatum HOM05D004863 ORTHO05D005802 3.1e-16 89.0 75 56.0
QL08p063631 Quercus lobata HOM05D004863 ORTHO05D005802 3.1e-16 89.0 75 56.0
Glyma.02G263700 Glycine max HOM05D004863 ORTHO05D005802 5.3e-16 88.2 82 52.4
Glyma.14G057200 Glycine max HOM05D004863 ORTHO05D005802 5.3e-16 88.2 82 52.4
Medtr5g081270 Medicago truncatula HOM05D004863 ORTHO05D005802 5.3e-16 88.2 75 54.7
Nn2g10959 Nelumbo nucifera HOM05D004863 ORTHO05D005802 5.3e-16 88.2 83 51.8
Sed0002460 Sechium edule HOM05D004863 ORTHO05D005802 5.3e-16 88.2 75 56.0
TPR.G38454 Trifolium pratense HOM05D004863 ORTHO05D005802 5.3e-16 88.2 75 54.7
Ah.16g103820 Amaranthus hybridus HOM05D004863 ORTHO05D005802 7.0e-16 87.8 75 56.0
Aqoxy1G01634 Aquilegia oxysepala HOM05D004863 ORTHO05D005802 7.0e-16 87.8 75 54.7
Aqoxy5G04144 Aquilegia oxysepala HOM05D004863 ORTHO05D005802 7.0e-16 87.8 75 54.7
CAN.G1432.18 Capsicum annuum HOM05D004863 ORTHO05D005802 7.0e-16 87.8 75 54.7
LjContig00357g0010590 Lotus japonicus HOM05D004863 ORTHO05D005802 7.0e-16 87.8 82 51.2
PSO017G6293 Papaver somniferum HOM05D004863 ORTHO05D005802 7.0e-16 87.8 76 53.9
PSO170G5836 Papaver somniferum HOM05D004863 ORTHO05D005802 7.0e-16 87.8 76 53.9
TWI09G1305 Tripterygium wilfordii HOM05D004863 ORTHO05D005802 7.0e-16 87.8 75 54.7
Migut.F00644 Erythranthe guttata HOM05D004863 ORTHO05D005802 9.1e-16 87.4 91 48.4
RcHm_v2.0_Chr0c11g0499361 Rosa chinensis HOM05D004863 ORTHO05D005802 9.1e-16 87.4 92 47.8
RcHm_v2.0_Chr0c11g0499561 Rosa chinensis HOM05D004863 ORTHO05D005802 9.1e-16 87.4 92 47.8
SalBow3G1147 Salvia bowleyana HOM05D004863 ORTHO05D005802 1.2e-15 87.0 75 54.7
Pp3c3_26738 Physcomitrium patens HOM05D004863 ORTHO05D005802 1.6e-15 86.7 75 54.7
THA.LOC104816534 Tarenaya hassleriana HOM05D004863 ORTHO05D005802 2.0e-15 86.3 75 53.3
AagrBONN_evm.TU.Sc2ySwM_117.1674 Anthoceros agrestis HOM05D004863 ORTHO05D005802 2.7e-15 85.9 82 51.2
Sed0025167 Sechium edule HOM05D004863 ORTHO05D005802 2.7e-15 85.9 75 53.3
Solyc06g074860.2 Solanum lycopersicum HOM05D004863 ORTHO05D005802 2.7e-15 85.9 75 53.3
MD12G1179600 Malus domestica HOM05D004863 ORTHO05D005802 4.5e-15 85.1 75 57.3
Psat2g030120 Pisum sativum HOM05D004863 ORTHO05D005802 4.5e-15 85.1 75 53.3
Mapoly0041s0038 Marchantia polymorpha HOM05D004863 ORTHO05D005802 5.9e-15 84.7 75 54.7
SGA_v2.0_scaffold60G20969 Striga asiatica HOM05D004863 ORTHO05D005802 5.9e-15 84.7 75 53.3
FAN13G2483 Fragaria x ananassa HOM05D004863 ORTHO05D005802 1.0e-14 84.0 75 54.7
FvH4_5g35270 Fragaria vesca HOM05D004863 ORTHO05D005802 1.7e-14 83.2 75 53.3
FAN04G1688 Fragaria x ananassa HOM05D004863 ORTHO05D005802 2.2e-14 82.8 75 54.7
AT5G05490 Arabidopsis thaliana HOM05D004863 ORTHO05D005802 8.5e-14 80.9 84 48.8
BolC9t59888H Brassica oleracea HOM05D004863 ORTHO05D005802 8.5e-14 80.9 77 51.9
ECA234G2111 Erigeron canadensis HOM05D004863 ORTHO05D005802 1.1e-13 80.5 75 50.7
GSVIVG01032766001 Vitis vinifera HOM05D004863 ORTHO05D005802 1.1e-13 80.5 80 50.0
BraA10t45119Z Brassica rapa HOM05D004863 ORTHO05D005297 2.5e-13 79.3 69 55.1
DCAR_011837 Daucus carota HOM05D004863 ORTHO05D001062 2.5e-13 79.3 64 57.8
Gohir.D04G070101 Gossypium hirsutum HOM05D004863 ORTHO05D005802 2.5e-13 79.3 75 49.3
Duzib128G0112 Durio zibethinus HOM05D004863 ORTHO05D005802 3.2e-13 79.0 75 49.3
Haze_17264 Corylus avellana HOM05D000087 ORTHO05D000793 5.5e-13 78.2 74 51.4
Gorai.012G078600 Gossypium raimondii HOM05D004863 ORTHO05D005802 1.2e-12 77.0 75 48.0
HanXRQChr08g0221791 Helianthus annuus HOM05D004863 ORTHO05D005802 1.2e-12 77.0 65 55.4
Gohir.A05G331501 Gossypium hirsutum HOM05D004863 ORTHO05D005802 2.1e-12 76.3 75 46.7
SMO142G0069 Selaginella moellendorffii HOM05D004863 ORTHO05D005802 6.1e-12 74.7 62 56.5
ClCG07G004460 Citrullus lanatus HOM05D004863 ORTHO05D005802 8.0e-12 74.3 75 53.3
Cc02_g05730 Coffea canephora HOM05D004863 ORTHO05D005802 1.0e-11 73.9 80 43.8
Cre12.g554650 Chlamydomonas reinhardtii HOM05D004863 ORTHO05D005802 6.8e-11 71.2 76 47.4
SEGI_17620 Sequoiadendron giganteum HOM05D004863 ORTHO05D005802 2.6e-10 69.3 75 52.0
Os08g0266700 Oryza sativa ssp. japonica HOM05D001331 ORTHO05D001157 2.2e-09 66.2 102 38.2
CANSAT56G0816 Cannabis sativa HOM05D004863 ORTHO05D005802 1.8e-08 63.2 57 56.1
CSS0013989 Camellia sinensis var. sinensis HOM05D001331 ORTHO05D001157 3.1e-08 62.4 100 34.0
CSS0044223 Camellia sinensis var. sinensis HOM05D001331 ORTHO05D001157 3.1e-08 62.4 100 34.0
AUR62012290 Chenopodium quinoa HOM05D004863 ORTHO05D005802 3.1e-08 62.4 57 54.4
TPR.G25337 Trifolium pratense HOM05D004863 ORTHO05D005802 3.1e-08 62.4 71 47.9
AL6G15380 Arabidopsis lyrata HOM05D004863 ORTHO05D005802 4.1e-08 62.0 57 52.6
A10p30780 Brassica napus HOM05D004863 ORTHO05D005297 4.1e-08 62.0 57 52.6
C09p71270 Brassica napus HOM05D004863 ORTHO05D005297 4.1e-08 62.0 57 52.6
Sabra08G0053500 Salix brachista HOM05D004863 ORTHO05D005802 4.1e-08 62.0 69 49.3
Actinidia32326 Actinidia chinensis HOM05D005463 ORTHO05D006900 5.4e-08 61.6 100 34.0
Dinv00376 Davidia involucrata HOM05D001331 ORTHO05D001157 7.0e-08 61.2 100 34.0
Dinv43475 Davidia involucrata HOM05D001331 ORTHO05D001157 7.0e-08 61.2 100 34.0
PSO384G4319 Papaver somniferum HOM05D001331 ORTHO05D001157 7.0e-08 61.2 77 36.4
Actinidia00665 Actinidia chinensis HOM05D004863 ORTHO05D005802 9.1e-08 60.8 57 52.6
arahy.Tifrunner.gnm1.ann1.SVWC8K Arachis hypogaea HOM05D004863 ORTHO05D005802 9.1e-08 60.8 64 48.4
ECA248G2009 Erigeron canadensis HOM05D001331 ORTHO05D001157 9.1e-08 60.8 100 32.0
MCO11G592 Micromonas commoda HOM05D001331 ORTHO05D001157 9.1e-08 60.8 75 40.0
Nitab4.5_0001163g0110 Nicotiana tabacum HOM05D004863 ORTHO05D005802 9.1e-08 60.8 57 52.6
PSO339G3524 Papaver somniferum HOM05D001331 ORTHO05D001157 9.1e-08 60.8 77 37.7
Cpa.g.sc295.4 Carica papaya HOM05D001331 ORTHO05D001157 1.2e-07 60.5 100 33.0
AUR62022930 Chenopodium quinoa HOM05D004863 ORTHO05D005802 1.2e-07 60.5 50 54.0
HanXRQChr01g0018521 Helianthus annuus HOM05D001331 ORTHO05D001157 1.6e-07 60.1 100 31.0
HanXRQChr01g0018551 Helianthus annuus HOM05D001331 ORTHO05D001157 1.6e-07 60.1 100 31.0
Medtr5g083120 Medicago truncatula HOM05D004863 ORTHO05D005802 1.6e-07 60.1 57 50.9
HPP92_017958 Vanilla planifolia HOM05D001331 ORTHO05D001157 1.6e-07 60.1 100 37.0
Cfa001286 Carpinus fangiana HOM05D004863 ORTHO05D005802 2.0e-07 59.7 57 50.9
Duzib268G0738 Durio zibethinus HOM05D001331 ORTHO05D001157 2.0e-07 59.7 100 33.0
Manes.03G096000 Manihot esculenta HOM05D001331 ORTHO05D001157 2.0e-07 59.7 100 33.0
vmacro10020 Vaccinium macrocarpon HOM05D004863 ORTHO05D005802 2.0e-07 59.7 57 50.9
GSVIVG01032038001 Vitis vinifera HOM05D001331 ORTHO05D001157 2.0e-07 59.7 100 34.0
Lsat_1_v5_gn_1_108760 Lactuca sativa HOM05D001331 ORTHO05D001157 2.7e-07 59.3 100 30.0
PRCOL_00005766 Prasinoderma coloniale HOM05D001331 ORTHO05D001157 2.7e-07 59.3 105 33.3
RcHm_v2.0_Chr7g0230601 Rosa chinensis HOM05D004863 ORTHO05D005802 2.7e-07 59.3 58 51.7
Ciclev10031002m.g Citrus clementina HOM05D004863 ORTHO05D005802 3.5e-07 58.9 59 47.5
TAR369G0656 Trochodendron aralioides HOM05D001331 ORTHO05D001157 3.5e-07 58.9 100 32.0
MBI02_g11457_MAGBIO Magnolia biondii HOM05D001331 ORTHO05D001157 4.5e-07 58.5 100 36.0
vmacro13640 Vaccinium macrocarpon HOM05D001331 ORTHO05D001157 4.5e-07 58.5 100 31.0
AL5G41480 Arabidopsis lyrata HOM05D001331 ORTHO05D001157 5.9e-07 58.2 100 32.0
Lalb_Chr10g0105241 Lupinus albus HOM05D004863 ORTHO05D005802 5.9e-07 58.2 57 49.1
SGA_v2.0_scaffold95G28786 Striga asiatica HOM05D001331 ORTHO05D001157 5.9e-07 58.2 100 33.0
Dinv43910 Davidia involucrata HOM05D001331 ORTHO05D001157 7.7e-07 57.8 100 33.0
MD02G1316900 Malus domestica HOM05D001331 ORTHO05D001157 7.7e-07 57.8 100 32.0
SEGI_17466 Sequoiadendron giganteum HOM05D001331 ORTHO05D001157 7.7e-07 57.8 100 32.0
Sopen06g031290 Solanum pennellii HOM05D004863 ORTHO05D005802 7.7e-07 57.8 57 49.1
Atru.chr12.77 Acer truncatum HOM05D004863 ORTHO05D005802 1.0e-06 57.4 57 47.4
CDE02G4076 Ceratophyllum demersum HOM05D000359 ORTHO05D000251 1.0e-06 57.4 100 33.0
CDE05G2826 Ceratophyllum demersum HOM05D000359 ORTHO05D001157 1.0e-06 57.4 100 33.0
RcHm_v2.0_Chr7g0236141 Rosa chinensis HOM05D004863 ORTHO05D005802 1.3e-06 57.0 57 50.9
Sc10g0002560 Simmondsia chinensis HOM05D004863 ORTHO05D005802 1.3e-06 57.0 73 42.5
Migut.N01488 Erythranthe guttata HOM05D001331 ORTHO05D001157 1.7e-06 56.6 100 33.0
DCAR_015685 Daucus carota HOM05D001331 ORTHO05D001157 2.3e-06 56.2 101 30.7
MD04G1165800 Malus domestica HOM05D004863 ORTHO05D005802 2.3e-06 56.2 55 52.7
Prupe.2G007300 Prunus persica HOM05D001331 ORTHO05D001157 2.3e-06 56.2 100 31.0
MD07G1005000 Malus domestica HOM05D001331 ORTHO05D001157 2.9e-06 55.8 100 31.0
Nn2g12130 Nelumbo nucifera HOM05D001331 ORTHO05D001157 2.9e-06 55.8 76 39.5
FvH4_7g00520 Fragaria vesca HOM05D001331 ORTHO05D001157 3.8e-06 55.5 75 36.0
FAN03G2484 Fragaria x ananassa HOM05D001331 ORTHO05D001157 3.8e-06 55.5 75 36.0
FAN06G3408 Fragaria x ananassa HOM05D001331 ORTHO05D001157 3.8e-06 55.5 75 36.0
FAN10G4137 Fragaria x ananassa HOM05D001331 ORTHO05D001157 3.8e-06 55.5 75 36.0
RcHm_v2.0_Chr1g0314311 Rosa chinensis HOM05D001331 ORTHO05D001157 3.8e-06 55.5 75 36.0
SMO352G0017 Selaginella moellendorffii HOM05D001331 ORTHO05D001157 3.8e-06 55.5 75 38.7
unitig_46.g18609 Utricularia gibba HOM05D004863 ORTHO05D005802 3.8e-06 55.5 57 47.4
AT3G59550 Arabidopsis thaliana HOM05D001331 ORTHO05D001157 5.0e-06 55.1 100 31.0
Aqoxy3G00783 Aquilegia oxysepala HOM05D001331 ORTHO05D001157 6.6e-06 54.7 90 33.3
Lalb_Chr01g0015201 Lupinus albus HOM05D001331 ORTHO05D001157 6.6e-06 54.7 75 34.7
AUR62016622 Chenopodium quinoa HOM05D001331 ORTHO05D001157 8.6e-06 54.3 100 30.0
Lj5C342T6 Lonicera japonica HOM05D001331 ORTHO05D001157 8.6e-06 54.3 100 31.0
SalBow4G2752 Salvia bowleyana HOM05D001331 ORTHO05D001157 8.6e-06 54.3 100 31.0
SGA_v2.0_scaffold4G02244 Striga asiatica HOM05D001331 ORTHO05D001157 8.6e-06 54.3 100 32.0
unitig_0.g376 Utricularia gibba HOM05D001331 ORTHO05D001157 8.6e-06 54.3 75 38.7


User provided reference genes

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