Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g33917 Chara braunii HOM05D003499 ORTHO05D004754 0.0e+00 1942.5 1335 100.0
AagrBONN_evm.TU.Sc2ySwM_344.3653 Anthoceros agrestis HOM05D003499 ORTHO05D004754 7.9e-80 303.5 395 47.8
Pp3c8_8020 Physcomitrium patens HOM05D003499 ORTHO05D004754 5.1e-79 300.8 404 45.0
Mapoly0042s0082 Marchantia polymorpha HOM05D003499 ORTHO05D004754 3.7e-77 294.7 377 46.4
SMO203G0250 Selaginella moellendorffii HOM05D003499 ORTHO05D004754 1.5e-62 246.1 359 45.7
ATR1127G224 Amborella trichopoda HOM05D003499 ORTHO05D004754 5.9e-59 234.2 376 40.7
CAN.G374.15 Capsicum annuum HOM05D003499 ORTHO05D004754 1.3e-58 233.0 408 38.7
Lalb_Chr01g0015591 Lupinus albus HOM05D003499 ORTHO05D004754 9.4e-57 226.9 399 37.6
PGSC0003DMG400016328 Solanum tuberosum HOM05D003499 ORTHO05D004754 9.4e-57 226.9 384 39.8
C06p29970 Brassica napus HOM05D003499 ORTHO05D004754 1.6e-56 226.1 413 36.6
BolC6t38157H Brassica oleracea HOM05D003499 ORTHO05D004754 1.6e-56 226.1 413 36.6
CiPaw.15G111600 Carya illinoinensis HOM05D003499 ORTHO05D004754 1.6e-56 226.1 397 38.3
BcaC08g45365 Brassica carinata HOM05D003499 ORTHO05D004754 4.7e-56 224.6 413 36.3
BraA07t30364Z Brassica rapa HOM05D003499 ORTHO05D004754 4.7e-56 224.6 413 36.6
Potri.008G080900 Populus trichocarpa HOM05D003499 ORTHO05D004754 6.1e-56 224.2 405 37.3
Nitab4.5_0005627g0040 Nicotiana tabacum HOM05D003499 ORTHO05D004754 1.0e-55 223.4 401 38.2
A07p27200 Brassica napus HOM05D003499 ORTHO05D004754 1.4e-55 223.0 407 36.4
SEGI_27786 Sequoiadendron giganteum HOM05D003499 ORTHO05D004754 3.0e-55 221.9 399 38.6
CARHR072950 Cardamine hirsuta HOM05D003499 ORTHO05D004754 6.7e-55 220.7 406 37.4
AL2G39880 Arabidopsis lyrata HOM05D003499 ORTHO05D004754 8.8e-55 220.3 408 37.5
A07p44380 Brassica napus HOM05D003499 ORTHO05D004754 8.8e-55 220.3 385 37.9
Sopen06g018680 Solanum pennellii HOM05D003499 ORTHO05D004754 2.0e-54 219.2 384 38.8
AT1G79280 Arabidopsis thaliana HOM05D003499 ORTHO05D004754 2.6e-54 218.8 405 36.8
BolC6t40336H Brassica oleracea HOM05D003499 ORTHO05D004754 2.6e-54 218.8 385 37.7
Carub.0002s2615 Capsella rubella HOM05D003499 ORTHO05D004754 2.6e-54 218.8 408 36.8
C06p53180 Brassica napus HOM05D003499 ORTHO05D004754 3.3e-54 218.4 385 37.7
CANSAT56G3760 Cannabis sativa HOM05D003499 ORTHO05D004754 3.3e-54 218.4 399 37.8
Gohir.A01G100800 Gossypium hirsutum HOM05D003499 ORTHO05D004754 3.3e-54 218.4 400 35.5
Sp5g34360 Schrenkiella parvula HOM05D003499 ORTHO05D004754 3.3e-54 218.4 384 37.5
Nitab4.5_0002333g0110 Nicotiana tabacum HOM05D003499 ORTHO05D004754 4.4e-54 218.0 408 37.5
Lj3g0016310 Lotus japonicus HOM05D003499 ORTHO05D004754 5.7e-54 217.6 399 36.8
PSO675G8338 Papaver somniferum HOM05D003499 ORTHO05D004754 1.3e-53 216.5 400 36.8
MSTRG.14572 Avicennia marina HOM05D003499 ORTHO05D004754 2.2e-53 215.7 399 35.6
BraA07t31947Z Brassica rapa HOM05D003499 ORTHO05D004754 2.8e-53 215.3 387 37.2
Duzib213G0086 Durio zibethinus HOM05D003499 ORTHO05D004754 2.8e-53 215.3 380 37.9
QL04p095880 Quercus lobata HOM05D003499 ORTHO05D004754 2.8e-53 215.3 359 39.3
Nn7g38420 Nelumbo nucifera HOM05D003499 ORTHO05D004754 3.7e-53 214.9 376 38.3
TAR626G0290 Trochodendron aralioides HOM05D003499 ORTHO05D004754 8.2e-53 213.8 403 37.0
GSVIVG01036698001 Vitis vinifera HOM05D003499 ORTHO05D004754 8.2e-53 213.8 376 37.8
Peaxi162Scf00579g00316 Petunia axillaris HOM05D003499 ORTHO05D004754 1.8e-52 212.6 378 37.0
HanXRQChr14g0459251 Helianthus annuus HOM05D003499 ORTHO05D004754 2.4e-52 212.2 408 35.3
Lalb_Chr25g0284181 Lupinus albus HOM05D003499 ORTHO05D004754 4.1e-52 211.5 407 35.9
Gohir.D01G085300 Gossypium hirsutum HOM05D003499 ORTHO05D004754 5.3e-52 211.1 400 34.8
Gorai.002G110900 Gossypium raimondii HOM05D003499 ORTHO05D004754 5.3e-52 211.1 400 34.8
BcaB02g07209 Brassica carinata HOM05D003499 ORTHO05D004754 1.6e-51 209.5 411 36.0
MD05G1240600 Malus domestica HOM05D003499 ORTHO05D004754 1.6e-51 209.5 399 35.8
arahy.Tifrunner.gnm1.ann1.LW990M Arachis hypogaea HOM05D003499 ORTHO05D004754 3.5e-51 208.4 399 35.3
Aa31LG4G1710 Aethionema arabicum HOM05D003499 ORTHO05D004754 1.0e-50 206.8 446 35.0
PSO541G3284 Papaver somniferum HOM05D003499 ORTHO05D004754 1.0e-50 206.8 398 36.7
CDE02G3941 Ceratophyllum demersum HOM05D003499 ORTHO05D004754 1.9e-49 202.6 397 35.3
Thhalv10017995m.g Eutrema salsugineum HOM05D003499 ORTHO05D004754 1.9e-49 202.6 408 35.3
FAN21G2046 Fragaria x ananassa HOM05D003499 ORTHO05D004754 4.2e-49 201.4 399 35.6
Glyma.08G162300 Glycine max HOM05D003499 ORTHO05D004754 2.1e-48 199.1 361 38.5
RcHm_v2.0_Chr5g0023031 Rosa chinensis HOM05D003499 ORTHO05D004754 2.7e-48 198.7 399 35.6
ECA233G1650 Erigeron canadensis HOM05D003499 ORTHO05D004754 3.6e-48 198.4 408 33.8
unitig_578.g16338 Utricularia gibba HOM05D003499 ORTHO05D004754 4.7e-48 198.0 401 34.4
arahy.Tifrunner.gnm1.ann1.DHQL63 Arachis hypogaea HOM05D003499 ORTHO05D004754 6.1e-48 197.6 399 34.6
Glyma.15G265300 Glycine max HOM05D003499 ORTHO05D004754 6.1e-48 197.6 399 35.3
Manes.16G052800 Manihot esculenta HOM05D003499 ORTHO05D004754 8.0e-48 197.2 370 36.8
HPP92_017338 Vanilla planifolia HOM05D003499 ORTHO05D004754 8.0e-48 197.2 327 38.8
CiPaw.16G079000 Carya illinoinensis HOM05D003499 ORTHO05D004754 1.2e-46 193.4 406 35.0
Thecc.07G189900 Theobroma cacao HOM05D003499 ORTHO05D004754 1.2e-46 193.4 402 35.1
HPP92_017349 Vanilla planifolia HOM05D003499 ORTHO05D004754 2.6e-46 192.2 403 32.8
SGA_v2.0_scaffold239G43999 Striga asiatica HOM05D003499 ORTHO05D004754 4.4e-46 191.4 388 34.8
Oeu025989.1 Olea europaea HOM05D003499 ORTHO05D004754 5.7e-46 191.0 410 34.1
Atru.chr1.17 Acer truncatum HOM05D003499 ORTHO05D004754 1.7e-45 189.5 408 33.8
Aqoxy1G01362 Aquilegia oxysepala HOM05D003499 ORTHO05D004754 1.1e-44 186.8 400 35.2
TWI38G0606 Tripterygium wilfordii HOM05D003499 ORTHO05D004754 1.1e-44 186.8 408 33.8
Cfa017771 Carpinus fangiana HOM05D003499 ORTHO05D004754 1.8e-44 186.0 376 35.4
Dinv19570 Davidia involucrata HOM05D003499 ORTHO05D004754 7.0e-44 184.1 354 37.6
Lsat_1_v5_gn_8_41780 Lactuca sativa HOM05D003499 ORTHO05D004754 1.2e-43 183.3 359 37.6
Hund21305 Selenicereus undatus HOM05D003499 ORTHO05D004754 1.2e-43 183.3 370 35.7
Hma1.2p1_0151F.1_g066930 Hydrangea macrophylla HOM05D003499 ORTHO05D004754 3.5e-43 181.8 331 37.8
Medtr2g063480 Medicago truncatula HOM05D003499 ORTHO05D004754 1.3e-42 179.9 401 33.9
FAN16G2389 Fragaria x ananassa HOM05D003499 ORTHO05D004754 2.9e-42 178.7 464 31.0
Prupe.4G125000 Prunus persica HOM05D003499 ORTHO05D004754 2.9e-42 178.7 399 33.3
Cc00_g09120 Coffea canephora HOM05D003499 ORTHO05D004754 8.5e-42 177.2 373 34.3
TPR.G3598 Trifolium pratense HOM05D003499 ORTHO05D004754 2.5e-41 175.6 399 32.6
THA.LOC104813306 Tarenaya hassleriana HOM05D003499 ORTHO05D004754 7.2e-41 174.1 405 33.6
Dinv42452 Davidia involucrata HOM05D003499 ORTHO05D004754 1.2e-40 173.3 281 41.6
Actinidia26203 Actinidia chinensis HOM05D003499 ORTHO05D004754 4.7e-40 171.4 400 32.8
Phvul.005G045700 Phaseolus vulgaris HOM05D003499 ORTHO05D004754 6.1e-40 171.0 399 32.6
Migut.H01651 Erythranthe guttata HOM05D003499 ORTHO05D004754 4.0e-39 168.3 398 31.9
MBI02_g17883_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004754 1.2e-38 166.8 251 41.8
Oeu025990.2 Olea europaea HOM05D003499 ORTHO05D004754 2.2e-37 162.5 410 31.5
EL10Ac8g19951 Beta vulgaris HOM05D003499 ORTHO05D004754 2.8e-37 162.2 371 32.3
Ca_03376_v3 Cicer arietinum L. HOM05D003499 ORTHO05D004754 2.8e-37 162.2 392 33.7
Haze_18466 Corylus avellana HOM05D003499 ORTHO05D004754 2.8e-37 162.2 376 32.7
PGR031G3814 Punica granatum HOM05D003499 ORTHO05D004754 1.4e-36 159.8 317 37.9
FvH4_3g13850 Fragaria vesca HOM05D003499 ORTHO05D004754 2.4e-36 159.1 399 31.8
Zm00001eb194730 Zea mays HOM05D003499 ORTHO05D004754 2.0e-35 156.0 332 34.6
Ciclev10006542m.g Citrus clementina HOM05D003499 ORTHO05D004754 5.9e-35 154.5 400 31.0
Os02g0741500 Oryza sativa ssp. japonica HOM05D003499 ORTHO05D004754 7.7e-35 154.1 373 34.3
FAN25G2460 Fragaria x ananassa HOM05D003499 ORTHO05D004754 1.0e-34 153.7 407 31.0
Sabra08G0060200 Salix brachista HOM05D003499 ORTHO05D004754 1.0e-34 153.7 439 30.3
Psat0s13g0320 Pisum sativum HOM05D003499 ORTHO05D004754 6.5e-34 151.0 401 31.2
MELO3C012583.2 Cucumis melo HOM05D003499 ORTHO05D004754 5.5e-33 147.9 395 30.1
CsaV3_7G023140 Cucumis sativus L. HOM05D003499 ORTHO05D004754 7.2e-33 147.5 372 31.7
AUR62012541 Chenopodium quinoa HOM05D003499 ORTHO05D004754 2.1e-32 146.0 370 33.0
DCAR_013704 Daucus carota HOM05D003499 ORTHO05D004754 2.1e-32 146.0 296 35.1
Eucgr.F04480 Eucalyptus grandis HOM05D003499 ORTHO05D004754 4.7e-32 144.8 400 29.2
AUR62014655 Chenopodium quinoa HOM05D003499 ORTHO05D004754 3.0e-31 142.1 366 32.8
ClCG09G022890 Citrullus lanatus HOM05D003499 ORTHO05D004754 4.0e-31 141.7 372 29.8
MD10G1218800 Malus domestica HOM05D003499 ORTHO05D004754 1.5e-30 139.8 376 30.6
Ah.09g236940 Amaranthus hybridus HOM05D003499 ORTHO05D004754 5.4e-28 131.3 375 30.4
FAN11G2210 Fragaria x ananassa HOM05D003499 ORTHO05D004754 3.5e-27 128.6 357 30.8
Sed0001737 Sechium edule HOM05D003499 ORTHO05D004754 2.3e-26 125.9 395 28.4
VMungo1080G1290 Vigna mungo HOM05D003499 ORTHO05D004754 2.5e-25 122.5 404 28.2
Sc05g0008250 Simmondsia chinensis HOM05D003499 ORTHO05D004754 3.0e-23 115.5 314 31.2
MCO03G110 Micromonas commoda HOM05D003499 ORTHO05D004754 2.0e-22 112.8 328 32.3
HanXRQChr08g0213121 Helianthus annuus HOM05D003499 ORTHO05D004754 3.4e-22 112.1 416 27.4
Sabra16G0005400 Salix brachista HOM05D000228 ORTHO05D001122 2.9e-21 109.0 375 26.7
PRCOL_00003349 Prasinoderma coloniale HOM05D003499 ORTHO05D004754 6.8e-15 87.8 358 30.2
Rhsim09G0000500 Rhododendron simsii HOM05D003499 ORTHO05D004754 1.5e-14 86.7 334 28.7
SEGI_41216 Sequoiadendron giganteum HOM05D003499 ORTHO05D004754 2.2e-13 82.8 156 36.5
Sabra19G0031200 Salix brachista HOM05D000228 ORTHO05D001122 1.2e-11 77.0 136 36.8
Sabra11G0075400 Salix brachista HOM05D000228 ORTHO05D001122 2.8e-08 65.9 375 22.1
COL.COLO4_25003 Corchorus olitorius HOM05D003499 ORTHO05D004754 8.1e-08 64.3 409 24.0
Cpa.g.sc569.2 Carica papaya HOM05D003499 ORTHO05D004754 6.8e-07 61.2 339 23.9


User provided reference genes

Program Settings