Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g31408 Chara braunii HOM05D006029 ORTHO05D007439 2.1e-85 318.9 155 100.0
CBR_g49523 Chara braunii HOM05D006029 ORTHO05D007439 9.6e-38 160.6 73 100.0
Mapoly0101s0063 Marchantia polymorpha HOM05D006029 ORTHO05D007439 3.9e-31 138.7 73 82.2
Pp3c15_5550 Physcomitrium patens HOM05D006029 ORTHO05D007439 4.3e-30 135.2 73 79.5
AagrBONN_evm.TU.Sc2ySwM_117.3630 Anthoceros agrestis HOM05D006029 ORTHO05D007439 1.5e-27 126.7 73 72.6
MCO11G240 Micromonas commoda HOM05D006029 ORTHO05D007439 1.6e-24 116.7 69 75.4
SMO159G0009 Selaginella moellendorffii HOM05D006029 ORTHO05D007439 2.7e-24 115.9 71 67.6
Cre02.g102400 Chlamydomonas reinhardtii HOM05D006029 ORTHO05D007439 3.0e-23 112.5 73 68.5
SMO347G0197 Selaginella moellendorffii HOM05D006029 ORTHO05D007439 8.7e-23 110.9 71 59.2
PRCOL_00000799 Prasinoderma coloniale HOM05D006029 ORTHO05D007439 1.6e-21 106.7 75 64.0
ATR0751G147 Amborella trichopoda HOM05D006029 ORTHO05D007439 1.3e-18 97.1 71 53.5
Os02g0672700 Oryza sativa ssp. japonica HOM05D006029 ORTHO05D007439 1.3e-18 97.1 71 57.7
Nn1g00349 Nelumbo nucifera HOM05D006029 ORTHO05D007439 9.3e-17 90.9 71 52.1
HPP92_017871 Vanilla planifolia HOM05D006029 ORTHO05D007439 1.8e-15 86.7 69 53.6
Zm00001eb187060 Zea mays HOM05D006029 ORTHO05D007439 2.3e-15 86.3 71 50.7
Sed0007850 Sechium edule HOM05D006029 ORTHO05D007439 3.0e-15 85.9 71 53.5
TAR374G1259 Trochodendron aralioides HOM05D006029 ORTHO05D007439 5.1e-15 85.1 71 52.1
Sed0019070 Sechium edule HOM05D006029 ORTHO05D007439 1.1e-14 84.0 71 47.9
ClCG10G013250 Citrullus lanatus HOM05D006029 ORTHO05D007439 7.4e-14 81.3 71 47.9
MELO3C026899.2 Cucumis melo HOM05D006029 ORTHO05D007439 7.4e-14 81.3 71 47.9
CsaV3_3G043380 Cucumis sativus L. HOM05D006029 ORTHO05D007439 7.4e-14 81.3 71 47.9
Cfa010653 Carpinus fangiana HOM05D006029 ORTHO05D007439 1.3e-13 80.5 71 49.3
CSS0011460 Camellia sinensis var. sinensis HOM05D006029 ORTHO05D007439 3.7e-13 79.0 71 47.9
CAN.G694.9 Capsicum annuum HOM05D006029 ORTHO05D007439 4.8e-13 78.6 71 50.7
DCAR_006981 Daucus carota HOM05D006425 ORTHO05D007312 4.8e-13 78.6 71 49.3
Hma1.2p1_1482F.1_g286210 Hydrangea macrophylla HOM05D006029 ORTHO05D007439 4.8e-13 78.6 71 49.3
GSVIVG01027190001 Vitis vinifera HOM05D006029 ORTHO05D007439 6.3e-13 78.2 71 49.3
vmacro12594 Vaccinium macrocarpon HOM05D006029 ORTHO05D007439 8.2e-13 77.8 71 47.9
Rhsim07G0002100 Rhododendron simsii HOM05D006029 ORTHO05D007439 1.1e-12 77.4 71 47.9
PGSC0003DMG402023468 Solanum tuberosum HOM05D006029 ORTHO05D007439 1.1e-12 77.4 71 49.3
CiPaw.02G042300 Carya illinoinensis HOM05D006029 ORTHO05D007439 1.4e-12 77.0 71 47.9
Sabra12G0016400 Salix brachista HOM05D006029 ORTHO05D007439 1.8e-12 76.6 71 47.9
Aqoxy4G03109 Aquilegia oxysepala HOM05D006029 ORTHO05D007439 2.4e-12 76.3 71 47.9
PSO782G1905 Papaver somniferum HOM05D006029 ORTHO05D007439 2.4e-12 76.3 71 43.7
PSO782G2649 Papaver somniferum HOM05D006029 ORTHO05D007439 2.4e-12 76.3 71 43.7
PSO782G4464 Papaver somniferum HOM05D006029 ORTHO05D007439 2.4e-12 76.3 71 43.7
Phvul.008G101000 Phaseolus vulgaris HOM05D006029 ORTHO05D007439 2.4e-12 76.3 71 45.1
Potri.012G015900 Populus trichocarpa HOM05D006029 ORTHO05D007439 2.4e-12 76.3 71 47.9
Rhsim01G0175700 Rhododendron simsii HOM05D006029 ORTHO05D007439 2.4e-12 76.3 71 46.5
TWI36G0126 Tripterygium wilfordii HOM05D006029 ORTHO05D007439 2.4e-12 76.3 71 43.7
Manes.01G243500 Manihot esculenta HOM05D006029 ORTHO05D007439 3.1e-12 75.9 71 45.1
Solyc05g055890.3 Solanum lycopersicum HOM05D006029 ORTHO05D007439 4.1e-12 75.5 71 47.9
Sopen05g034290 Solanum pennellii HOM05D006029 ORTHO05D007439 4.1e-12 75.5 71 47.9
Ciclev10022957m.g Citrus clementina HOM05D006029 ORTHO05D007439 5.3e-12 75.1 71 43.7
Gohir.D08G145300 Gossypium hirsutum HOM05D006029 ORTHO05D007439 5.3e-12 75.1 71 45.1
Gohir.D12G270400 Gossypium hirsutum HOM05D006029 ORTHO05D007439 5.3e-12 75.1 71 45.1
Gorai.004G150300 Gossypium raimondii HOM05D006029 ORTHO05D007439 5.3e-12 75.1 71 45.1
Gorai.008G290700 Gossypium raimondii HOM05D006029 ORTHO05D007439 5.3e-12 75.1 71 45.1
Oeu043218.1 Olea europaea HOM05D006029 ORTHO05D007439 5.3e-12 75.1 71 46.5
Gohir.A12G269900 Gossypium hirsutum HOM05D006029 ORTHO05D007439 1.2e-11 73.9 63 50.8
COL.COLO4_06245 Corchorus olitorius HOM05D006029 ORTHO05D007439 2.0e-11 73.2 71 45.1
PSO170G0977 Papaver somniferum HOM05D006029 ORTHO05D007439 2.0e-11 73.2 71 42.3
Peaxi162Scf00156g00617 Petunia axillaris HOM05D006029 ORTHO05D007439 2.0e-11 73.2 71 46.5
Atru.chr5.715 Acer truncatum HOM05D006029 ORTHO05D007439 2.6e-11 72.8 71 42.3
Aa31LG1G10580 Aethionema arabicum HOM05D006029 ORTHO05D007439 2.6e-11 72.8 71 47.9
Glyma.18G179600 Glycine max HOM05D006029 ORTHO05D007439 2.6e-11 72.8 73 43.8
Gohir.A08G124200 Gossypium hirsutum HOM05D006029 ORTHO05D007439 2.6e-11 72.8 71 43.7
Eucgr.E03439 Eucalyptus grandis HOM05D006029 ORTHO05D007439 3.4e-11 72.4 71 45.1
Eucgr.E03441 Eucalyptus grandis HOM05D006029 ORTHO05D007439 3.4e-11 72.4 71 45.1
Eucgr.E03442 Eucalyptus grandis HOM05D006029 ORTHO05D007439 3.4e-11 72.4 71 45.1
Eucgr.L01751 Eucalyptus grandis HOM05D006029 ORTHO05D007439 3.4e-11 72.4 71 45.1
Glyma.07G131200 Glycine max HOM05D006029 ORTHO05D007439 3.4e-11 72.4 73 43.8
Duzib138G0795 Durio zibethinus HOM05D006029 ORTHO05D007439 4.5e-11 72.0 71 43.7
EL10Ac5g10924 Beta vulgaris HOM05D006029 ORTHO05D007439 5.9e-11 71.6 72 48.6
Medtr7g116750 Medicago truncatula HOM05D006029 ORTHO05D007439 5.9e-11 71.6 78 38.5
Sc02g0002910 Simmondsia chinensis HOM05D006029 ORTHO05D007439 5.9e-11 71.6 77 49.4
Thecc.01G338500 Theobroma cacao HOM05D006029 ORTHO05D007439 7.7e-11 71.2 73 45.2
Lj1g0014790 Lotus japonicus HOM05D006029 ORTHO05D007439 1.0e-10 70.9 71 42.3
Lj1g0022243 Lotus japonicus HOM05D006029 ORTHO05D007439 1.0e-10 70.9 71 42.3
Psat3g005240 Pisum sativum HOM05D006029 ORTHO05D007439 1.0e-10 70.9 73 41.1
PGR102G2016 Punica granatum HOM05D006029 ORTHO05D007439 2.9e-10 69.3 71 43.7
THA.LOC104815886 Tarenaya hassleriana HOM05D006029 ORTHO05D007439 2.9e-10 69.3 71 45.1
unitig_60.g25801 Utricularia gibba HOM05D006029 ORTHO05D007439 5.0e-10 68.6 73 42.5
Lj3g0023283 Lotus japonicus HOM05D006029 ORTHO05D007439 6.5e-10 68.2 71 40.8
Hund17067 Selenicereus undatus HOM05D006029 ORTHO05D007439 6.5e-10 68.2 72 45.8
Peaxi162Scf00740g00556 Petunia axillaris HOM05D006029 ORTHO05D007439 8.5e-10 67.8 62 48.4
MSTRG.17362 Avicennia marina HOM05D006029 ORTHO05D007439 1.1e-09 67.4 74 45.9
vmacro23448 Vaccinium macrocarpon HOM05D006029 ORTHO05D007439 1.1e-09 67.4 62 48.4
arahy.Tifrunner.gnm1.ann1.A8XVJK Arachis hypogaea HOM05D006029 ORTHO05D007439 2.5e-09 66.2 71 38.0
arahy.Tifrunner.gnm1.ann1.ZU3BRN Arachis hypogaea HOM05D006029 ORTHO05D007439 2.5e-09 66.2 71 38.0
Cc00_g02440 Coffea canephora HOM05D006029 ORTHO05D007439 3.2e-09 65.9 71 40.8
CARHR001260 Cardamine hirsuta HOM05D006029 ORTHO05D007439 5.5e-09 65.1 71 42.3
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 5.5e-09 65.1 58 50.0
AT4G07950 Arabidopsis thaliana HOM05D006029 ORTHO05D007439 9.4e-09 64.3 71 40.8
Medtr5g030180 Medicago truncatula HOM05D006029 ORTHO05D007439 9.4e-09 64.3 71 36.6
AT1G01210 Arabidopsis thaliana HOM05D006029 ORTHO05D007439 1.2e-08 63.9 71 40.8
AL1G11270 Arabidopsis lyrata HOM05D006029 ORTHO05D007439 1.6e-08 63.5 71 40.8
Cpa.g.sc96.66 Carica papaya HOM05D006029 ORTHO05D007439 1.6e-08 63.5 71 40.8
Migut.B01899 Erythranthe guttata HOM05D006029 ORTHO05D007439 1.6e-08 63.5 74 41.9
Sp1g01080 Schrenkiella parvula HOM05D006029 ORTHO05D007439 1.6e-08 63.5 71 40.8
Carub.0003s3000 Capsella rubella HOM05D006029 ORTHO05D007439 2.1e-08 63.2 71 40.8
BcaC07g42429 Brassica carinata HOM05D006029 ORTHO05D007439 2.7e-08 62.8 71 42.3
A03p11160 Brassica napus HOM05D000069 ORTHO05D021930 2.7e-08 62.8 71 42.3
A09p39050 Brassica napus HOM05D006029 ORTHO05D007439 2.7e-08 62.8 71 42.3
A09p68990 Brassica napus HOM05D006029 ORTHO05D007439 2.7e-08 62.8 71 42.3
BolC3t13750H Brassica oleracea HOM05D006029 ORTHO05D007439 2.7e-08 62.8 71 42.3
BolC8t52870H Brassica oleracea HOM05D006029 ORTHO05D007439 2.7e-08 62.8 71 42.3
BraA03t10431Z Brassica rapa HOM05D006029 ORTHO05D007439 2.7e-08 62.8 71 42.3
BraA09t42236Z Brassica rapa HOM05D006029 ORTHO05D007439 2.7e-08 62.8 71 42.3
CANSAT56G3403 Cannabis sativa HOM05D006029 ORTHO05D007439 2.7e-08 62.8 71 38.0
Cc06_g21100 Coffea canephora HOM05D006029 ORTHO05D007439 2.7e-08 62.8 71 38.0
C03p12870 Brassica napus HOM05D006029 ORTHO05D007439 3.6e-08 62.4 71 42.3
BraA09t39405Z Brassica rapa HOM05D006029 ORTHO05D007439 3.6e-08 62.4 71 42.3
Thhalv10009170m.g Eutrema salsugineum HOM05D006029 ORTHO05D007439 3.6e-08 62.4 71 40.8
TPR.G4810 Trifolium pratense HOM05D006029 ORTHO05D007439 6.1e-08 61.6 79 35.4
Carub.0003s3001 Capsella rubella HOM05D003869 ORTHO05D004718 7.9e-08 61.2 69 42.0
SGA_v2.0_scaffold22G09953 Striga asiatica HOM05D006029 ORTHO05D007439 1.0e-07 60.8 74 37.8
Lalb_Chr04g0261421 Lupinus albus HOM05D006029 ORTHO05D007439 1.4e-07 60.5 71 32.4
MD01G1085300 Malus domestica HOM05D006029 ORTHO05D007439 3.9e-07 58.9 78 37.2
Lsat_1_v5_gn_4_30800 Lactuca sativa HOM05D006029 ORTHO05D007439 7.4e-06 54.7 72 40.3


User provided reference genes

Program Settings