Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g30099 Chara braunii HOM05D005275 ORTHO05D006435 4.3e-110 401.4 207 100.0
Mapoly0074s0056 Marchantia polymorpha HOM05D005275 ORTHO05D006435 4.3e-33 145.6 192 41.7
Pp3c9_14000 Physcomitrium patens HOM05D005275 ORTHO05D006435 1.1e-31 141.0 180 41.7
SMO334G0054 Selaginella moellendorffii HOM05D005275 ORTHO05D006435 2.0e-30 136.7 177 45.8
CDE01G0034 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 1.6e-27 127.1 179 40.2
Lj3g0024506 Lotus japonicus HOM05D005275 ORTHO05D006435 3.9e-26 122.5 192 39.1
Aqoxy7G03390 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 8.6e-26 121.3 183 39.3
Glyma.16G061500 Glycine max HOM05D005275 ORTHO05D006435 1.1e-25 120.9 192 38.0
AUR62002807 Chenopodium quinoa HOM05D005275 ORTHO05D006435 2.5e-25 119.8 180 37.8
Glyma.06G288700 Glycine max HOM05D005275 ORTHO05D006435 2.5e-25 119.8 192 37.5
EL10Ac3g05547 Beta vulgaris HOM05D005275 ORTHO05D006435 3.3e-25 119.4 180 37.2
Lj8A623T20 Lonicera japonica HOM05D005275 ORTHO05D006435 3.3e-25 119.4 181 39.8
Migut.F01020 Erythranthe guttata HOM05D005275 ORTHO05D006435 4.3e-25 119.0 197 36.5
Glyma.19G085300 Glycine max HOM05D005275 ORTHO05D006435 4.3e-25 119.0 192 38.0
Ca_10483_v3 Cicer arietinum L. HOM05D005275 ORTHO05D006435 5.6e-25 118.6 202 37.6
Phvul.008G150700 Phaseolus vulgaris HOM05D005275 ORTHO05D006435 5.6e-25 118.6 192 39.1
DCAR_008951 Daucus carota HOM05D005275 ORTHO05D006435 7.3e-25 118.2 204 37.3
Nn8g39914 Nelumbo nucifera HOM05D005275 ORTHO05D006435 9.5e-25 117.9 181 38.1
Sed0020778 Sechium edule HOM05D005275 ORTHO05D006435 9.5e-25 117.9 200 38.0
MSTRG.48 Avicennia marina HOM05D005275 ORTHO05D006435 1.6e-24 117.1 194 38.1
Cc01_g04130 Coffea canephora HOM05D005275 ORTHO05D006435 2.1e-24 116.7 181 37.6
HanXRQChr16g0505961 Helianthus annuus HOM05D005275 ORTHO05D006435 2.8e-24 116.3 180 38.3
QL09p007976 Quercus lobata HOM05D005275 ORTHO05D006435 3.6e-24 115.9 193 36.8
Hma1.2p1_1507F.1_g287690 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 4.7e-24 115.5 178 38.2
CiPaw.06G045000 Carya illinoinensis HOM05D005275 ORTHO05D006435 6.2e-24 115.2 199 36.7
TPR.G34143 Trifolium pratense HOM05D005275 ORTHO05D006435 8.1e-24 114.8 202 36.6
Lalb_Chr22g0360521 Lupinus albus HOM05D005275 ORTHO05D006435 1.1e-23 114.4 192 37.0
arahy.Tifrunner.gnm1.ann1.T9K8GJ Arachis hypogaea HOM05D005275 ORTHO05D006435 1.4e-23 114.0 192 37.5
TAR374G1406 Trochodendron aralioides HOM05D005275 ORTHO05D006435 1.4e-23 114.0 182 37.4
CANSAT21G1202 Cannabis sativa HOM05D005275 ORTHO05D006435 1.8e-23 113.6 200 35.5
arahy.Tifrunner.gnm1.ann1.AF7P3K Arachis hypogaea HOM05D005275 ORTHO05D006435 2.3e-23 113.2 192 37.5
CSS0019342 Camellia sinensis var. sinensis HOM05D005275 ORTHO05D006435 2.3e-23 113.2 186 38.7
ClCG05G009030 Citrullus lanatus HOM05D005275 ORTHO05D006435 3.1e-23 112.8 200 36.5
MBI14_g34252_MAGBIO Magnolia biondii HOM05D005275 ORTHO05D006435 4.0e-23 112.5 182 36.8
ECA236G4645 Erigeron canadensis HOM05D005275 ORTHO05D006435 5.2e-23 112.1 199 35.7
GSVIVG01038570001 Vitis vinifera HOM05D005275 ORTHO05D006435 5.2e-23 112.1 190 36.3
HanXRQChr04g0128021 Helianthus annuus HOM05D005275 ORTHO05D006435 6.8e-23 111.7 180 37.8
Psat7g227360 Pisum sativum HOM05D005275 ORTHO05D006435 6.8e-23 111.7 202 36.6
RcHm_v2.0_Chr1g0381511 Rosa chinensis HOM05D005275 ORTHO05D006435 8.9e-23 111.3 204 35.8
SGA_v2.0_scaffold55G19785 Striga asiatica HOM05D005275 ORTHO05D006435 8.9e-23 111.3 172 39.0
arahy.Tifrunner.gnm1.ann1.5IWG5U Arachis hypogaea HOM05D005275 ORTHO05D006435 1.2e-22 110.9 192 37.0
Ah.13g074120 Amaranthus hybridus HOM05D000770 ORTHO05D000586 1.5e-22 110.5 187 35.3
Cfa016214 Carpinus fangiana HOM05D005275 ORTHO05D006435 2.0e-22 110.2 191 35.6
FAN10G0352 Fragaria x ananassa HOM05D005275 ORTHO05D006435 2.0e-22 110.2 204 36.3
FAN10G2096 Fragaria x ananassa HOM05D000442 ORTHO05D007032 2.0e-22 110.2 204 36.3
Actinidia34231 Actinidia chinensis HOM05D005275 ORTHO05D006435 2.6e-22 109.8 189 36.5
Duzib114G0832 Durio zibethinus HOM05D005275 ORTHO05D006435 3.4e-22 109.4 207 36.2
FAN01G0712 Fragaria x ananassa HOM05D000442 ORTHO05D007032 3.4e-22 109.4 204 36.3
Sed0013694 Sechium edule HOM05D005275 ORTHO05D006435 3.4e-22 109.4 200 35.5
Medtr5g038540 Medicago truncatula HOM05D005275 ORTHO05D006435 5.8e-22 108.6 206 35.0
MD07G1293600 Malus domestica HOM05D005275 ORTHO05D006435 7.5e-22 108.2 196 36.7
Hund20626 Selenicereus undatus HOM05D005275 ORTHO05D006435 7.5e-22 108.2 172 38.4
Ciclev10022175m.g Citrus clementina HOM05D005275 ORTHO05D006435 1.3e-21 107.5 194 35.1
Medtr1g067700 Medicago truncatula HOM05D005275 ORTHO05D006435 1.3e-21 107.5 192 35.9
ATR0564G295 Amborella trichopoda HOM05D005275 ORTHO05D006435 1.7e-21 107.1 165 37.0
CDE02G4591 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 2.2e-21 106.7 149 39.6
Potri.012G017300 Populus trichocarpa HOM05D005275 ORTHO05D006435 2.2e-21 106.7 186 36.0
COL.COLO4_38546 Corchorus olitorius HOM05D005275 ORTHO05D006435 2.9e-21 106.3 204 35.3
TWI39G0072 Tripterygium wilfordii HOM05D005275 ORTHO05D006435 2.9e-21 106.3 184 36.4
Potri.012G121228 Populus trichocarpa HOM05D005275 ORTHO05D006435 3.7e-21 105.9 186 35.5
Lsat_1_v5_gn_7_91160 Lactuca sativa HOM05D005275 ORTHO05D006435 4.9e-21 105.5 180 34.4
Cpa.g.sc69.87 Carica papaya HOM05D005275 ORTHO05D006435 6.4e-21 105.1 186 36.6
Oeu060995.2 Olea europaea HOM05D005275 ORTHO05D006435 6.4e-21 105.1 192 35.4
Actinidia08664 Actinidia chinensis HOM05D005275 ORTHO05D006435 8.3e-21 104.8 164 37.2
CsaV3_3G019750 Cucumis sativus L. HOM05D005275 ORTHO05D006435 8.3e-21 104.8 200 34.5
PGR042G0357 Punica granatum HOM05D005275 ORTHO05D006435 8.3e-21 104.8 191 34.6
PSO421G0063 Papaver somniferum HOM05D005275 ORTHO05D006435 1.1e-20 104.4 188 36.2
THA.LOC104811989 Tarenaya hassleriana HOM05D005275 ORTHO05D006435 1.1e-20 104.4 216 33.3
Prupe.2G313400 Prunus persica HOM05D005275 ORTHO05D006435 1.4e-20 104.0 195 35.4
Thecc.10G105800 Theobroma cacao HOM05D005275 ORTHO05D006435 1.4e-20 104.0 201 33.8
HPP92_008880 Vanilla planifolia HOM05D005275 ORTHO05D006435 1.4e-20 104.0 179 35.8
Eucgr.H01489 Eucalyptus grandis HOM05D005275 ORTHO05D006435 2.4e-20 103.2 191 34.6
Atru.chr1.1611 Acer truncatum HOM05D005275 ORTHO05D006435 4.1e-20 102.4 186 34.4
Peaxi162Scf00251g01010 Petunia axillaris HOM05D005275 ORTHO05D006435 4.1e-20 102.4 188 36.2
Zm00001eb199670 Zea mays HOM05D005275 ORTHO05D006435 5.4e-20 102.1 170 36.5
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 9.2e-20 101.3 184 35.3
Nitab4.5_0004499g0010 Nicotiana tabacum HOM05D005275 ORTHO05D006435 9.2e-20 101.3 189 34.9
Manes.01G140200 Manihot esculenta HOM05D005275 ORTHO05D006435 1.2e-19 100.9 179 34.1
SHI02356 Sapria himalayana HOM05D005275 ORTHO05D006435 1.2e-19 100.9 198 32.3
Nitab4.5_0000006g0650 Nicotiana tabacum HOM05D005275 ORTHO05D006435 1.6e-19 100.5 189 35.4
Haze_00229 Corylus avellana HOM05D005275 ORTHO05D006435 3.5e-19 99.4 182 34.6
CARHR266090 Cardamine hirsuta HOM05D005275 ORTHO05D006435 4.6e-19 99.0 184 33.2
PSO675G7727 Papaver somniferum HOM05D005275 ORTHO05D006435 6.0e-19 98.6 171 35.1
Carub.0008s1327 Capsella rubella HOM05D005275 ORTHO05D006435 7.8e-19 98.2 184 35.3
AL8G27700 Arabidopsis lyrata HOM05D005275 ORTHO05D006435 1.3e-18 97.4 184 31.0
Os05g0528900 Oryza sativa ssp. japonica HOM05D005275 ORTHO05D006435 1.3e-18 97.4 180 35.0
Sabra12G0015200 Salix brachista HOM05D005275 ORTHO05D007032 1.3e-18 97.4 215 32.6
AT5G53070 Arabidopsis thaliana HOM05D005275 ORTHO05D006435 1.7e-18 97.1 184 31.5
AUR62014115 Chenopodium quinoa HOM05D005275 ORTHO05D006435 1.7e-18 97.1 236 29.2
Sc02g0003260 Simmondsia chinensis HOM05D005275 ORTHO05D006435 1.7e-18 97.1 209 31.6
Solyc05g032880.3 Solanum lycopersicum HOM05D005275 ORTHO05D006435 1.7e-18 97.1 189 34.4
Sopen05g023270 Solanum pennellii HOM05D005275 ORTHO05D006435 1.7e-18 97.1 189 34.4
Thhalv10014627m.g Eutrema salsugineum HOM05D005275 ORTHO05D006435 2.3e-18 96.7 183 33.3
Sp6g15240 Schrenkiella parvula HOM05D005275 ORTHO05D006435 5.1e-18 95.5 188 33.5
A02p11320 Brassica napus HOM05D005275 ORTHO05D006435 6.6e-18 95.1 183 33.3
BcaB05g22006 Brassica carinata HOM05D000442 ORTHO05D007032 1.1e-17 94.4 183 32.8
A10p10560 Brassica napus HOM05D005275 ORTHO05D006435 1.9e-17 93.6 183 32.8
Rhsim03G0210600 Rhododendron simsii HOM05D005275 ORTHO05D006435 1.9e-17 93.6 237 31.6
BcaC03g14459 Brassica carinata HOM05D005275 ORTHO05D006435 2.5e-17 93.2 183 32.8
BcaC04g20510 Brassica carinata HOM05D005275 ORTHO05D006435 2.5e-17 93.2 183 32.8
C02p18700 Brassica napus HOM05D005275 ORTHO05D006435 2.5e-17 93.2 183 32.8
C09p42780 Brassica napus HOM05D005275 ORTHO05D006435 2.5e-17 93.2 183 32.8
BraA02t06194Z Brassica rapa HOM05D005275 ORTHO05D006435 2.5e-17 93.2 183 32.8
BcaB08g35669 Brassica carinata HOM05D005275 ORTHO05D006435 4.3e-17 92.4 176 33.5
BraA10t43140Z Brassica rapa HOM05D005275 ORTHO05D006435 4.3e-17 92.4 183 32.2
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 5.6e-17 92.0 177 35.6
vmacro06395 Vaccinium macrocarpon HOM05D005275 ORTHO05D006435 7.3e-17 91.7 222 33.3
Gorai.009G304100 Gossypium raimondii HOM05D005275 ORTHO05D006435 1.2e-16 90.9 194 33.0
Gohir.A05G287800 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.6e-16 90.5 194 33.0
Gohir.D05G289000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 4.7e-16 89.0 194 32.5
Ciclev10023889m.g Citrus clementina HOM05D005275 ORTHO05D006435 8.1e-16 88.2 193 32.1
Gohir.A08G051700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.1e-15 87.8 194 32.0
Gohir.A10G201500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.8e-15 87.0 194 32.0
Gohir.A11G223000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.8e-15 87.0 194 32.0
Gohir.A12G028500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.8e-15 87.0 194 32.0
Lj1C1021T21 Lonicera japonica HOM05D005275 ORTHO05D006435 1.8e-15 87.0 196 32.7
Peaxi162Scf00581g00021 Petunia axillaris HOM05D005275 ORTHO05D006435 3.1e-15 86.3 225 31.1
BolC9t57154H Brassica oleracea HOM05D005275 ORTHO05D006435 4.0e-15 85.9 191 31.4
Gohir.A12G115900 Gossypium hirsutum HOM05D005275 ORTHO05D006435 6.8e-15 85.1 194 31.4
Gohir.D01G152400 Gossypium hirsutum HOM05D005275 ORTHO05D006435 6.8e-15 85.1 194 31.4
Gohir.D05G384500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 6.8e-15 85.1 194 31.4
Gohir.A04G061600 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.2e-14 84.3 178 32.0
BolC2t08015H Brassica oleracea HOM05D005275 ORTHO05D006435 2.0e-14 83.6 197 30.5
AagrBONN_evm.TU.Sc2ySwM_228.762 Anthoceros agrestis HOM05D005275 ORTHO05D006435 5.8e-14 82.0 128 35.2
Sc20g0002940 Simmondsia chinensis HOM05D005275 ORTHO05D006435 9.9e-14 81.3 138 33.3
VMungo1383G0294 Vigna mungo HOM05D005275 ORTHO05D006435 1.3e-13 80.9 137 38.0
unitig_62.g23847 Utricularia gibba HOM05D002066 ORTHO05D001617 2.2e-13 80.1 162 33.3
Gohir.D09G028700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.9e-12 77.0 172 31.4
Gohir.A07G020100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 4.2e-12 75.9 162 32.1
MCO07G577 Micromonas commoda HOM05D005275 ORTHO05D006435 1.0e-10 71.2 156 35.3
PGSC0003DMG400005324 Solanum tuberosum HOM05D005275 ORTHO05D006435 6.6e-10 68.6 105 39.0
Oeu037051.1 Olea europaea HOM05D005275 ORTHO05D006435 5.6e-09 65.5 122 32.8
FvH4_7g32000 Fragaria vesca HOM05D005275 ORTHO05D006435 7.3e-09 65.1 118 35.6
SEGI_07593 Sequoiadendron giganteum HOM05D005275 ORTHO05D006435 2.1e-08 63.5 91 40.7
MELO3C019369.2 Cucumis melo HOM05D005275 ORTHO05D006435 8.1e-08 61.6 153 30.1
arahy.Tifrunner.gnm1.ann1.G3VF9V Arachis hypogaea HOM05D005275 ORTHO05D006435 1.1e-07 61.2 268 24.3
Hma1.2p1_1507F.1_g287680 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 1.4e-07 60.8 103 34.0
CBR_g36656 Chara braunii HOM05D006252 ORTHO05D007909 1.8e-07 60.5 183 26.8
Dinv21061 Davidia involucrata HOM05D005275 ORTHO05D006435 1.8e-07 60.5 102 34.3
Ciclev10024016m.g Citrus clementina HOM05D005275 ORTHO05D006435 6.9e-07 58.5 58 44.8
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 9.0e-07 58.2 111 33.3
Gohir.A10G000100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.0e-06 57.0 114 33.3
Zm00001eb397120 Zea mays HOM05D005275 ORTHO05D006435 9.9e-06 54.7 75 37.3


User provided reference genes

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