Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g24400 Chara braunii HOM05D003353 ORTHO05D003751 0.0e+00 1224.9 692 100.0
CBR_g34557 Chara braunii HOM05D000019 ORTHO05D000048 4.9e-17 94.0 64 56.2
Cre12.g514250 Chlamydomonas reinhardtii HOM05D000329 ORTHO05D000833 5.5e-08 63.9 45 46.7
A05p44550 Brassica napus HOM05D003353 ORTHO05D003751 9.3e-08 63.2 50 42.0
C09p75140 Brassica napus HOM05D003353 ORTHO05D003751 9.3e-08 63.2 50 42.0
BolC5t35150H Brassica oleracea HOM05D003353 ORTHO05D003751 9.3e-08 63.2 50 42.0
BraA05t23202Z Brassica rapa HOM05D003353 ORTHO05D003751 9.3e-08 63.2 50 42.0
Cre02.g095045 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 9.3e-08 63.2 45 53.3
BNapus_Darmor_BZH_scaffold_119p00030 Brassica napus HOM05D003353 ORTHO05D003751 1.2e-07 62.8 50 42.0
BNapus_Darmor_BZH_scaffold_97p00400 Brassica napus HOM05D003353 ORTHO05D003751 1.2e-07 62.8 50 42.0
BolC1t05958H Brassica oleracea HOM05D003353 ORTHO05D003751 1.2e-07 62.8 50 42.0
BraA01t04666Z Brassica rapa HOM05D003353 ORTHO05D003751 1.2e-07 62.8 50 42.0
Aa31LG5G10560 Aethionema arabicum HOM05D003353 ORTHO05D003751 1.6e-07 62.4 50 40.0
AT3G01460 Arabidopsis thaliana HOM05D003353 ORTHO05D003751 1.6e-07 62.4 50 40.0
Carub.0003s0064 Capsella rubella HOM05D003353 ORTHO05D003751 1.6e-07 62.4 50 40.0
CARHR075500 Cardamine hirsuta HOM05D003353 ORTHO05D003751 1.6e-07 62.4 50 40.0
Thhalv10019872m.g Eutrema salsugineum HOM05D003353 ORTHO05D003751 1.6e-07 62.4 50 40.0
Nitab4.5_0000113g0210 Nicotiana tabacum HOM05D003353 ORTHO05D003751 1.6e-07 62.4 80 32.5
Nitab4.5_0002579g0080 Nicotiana tabacum HOM05D003353 ORTHO05D003751 1.6e-07 62.4 80 32.5
QL02p076799 Quercus lobata HOM05D003353 ORTHO05D003751 2.1e-07 62.0 49 44.9
SEGI_17596 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 2.1e-07 62.0 53 43.4
BcaB04g21418 Brassica carinata HOM05D003353 ORTHO05D003751 2.7e-07 61.6 49 42.9
Peaxi162Scf00338g00002 Petunia axillaris HOM05D003353 ORTHO05D003751 2.7e-07 61.6 48 41.7
Sp3g00610 Schrenkiella parvula HOM05D003353 ORTHO05D003751 2.7e-07 61.6 49 42.9
Ah.07g205290 Amaranthus hybridus HOM05D002415 ORTHO05D002522 3.5e-07 61.2 50 42.0
Ciclev10014026m.g Citrus clementina HOM05D003353 ORTHO05D003751 3.5e-07 61.2 48 43.8
MD09G1035200 Malus domestica HOM05D003353 ORTHO05D003751 3.5e-07 61.2 50 42.0
AL3G10710 Arabidopsis lyrata HOM05D003353 ORTHO05D003751 4.6e-07 60.8 50 38.0
Haze_12169 Corylus avellana HOM05D003353 ORTHO05D003751 4.6e-07 60.8 45 42.2
Lsat_1_v5_gn_8_157680 Lactuca sativa HOM05D003353 ORTHO05D003751 4.6e-07 60.8 46 45.7
THA.LOC104822384 Tarenaya hassleriana HOM05D003353 ORTHO05D003751 4.6e-07 60.8 50 38.0
Atru.chr6.2192 Acer truncatum HOM05D003353 ORTHO05D003751 6.0e-07 60.5 47 46.8
Eucgr.I01818 Eucalyptus grandis HOM05D003353 ORTHO05D003751 6.0e-07 60.5 50 42.0
CARHR253540 Cardamine hirsuta HOM05D004447 ORTHO05D005973 7.9e-07 60.1 51 47.1
COL.COLO4_28936 Corchorus olitorius HOM05D003353 ORTHO05D003751 1.0e-06 59.7 50 40.0
Lj6C805G5 Lonicera japonica HOM05D003353 ORTHO05D003751 1.0e-06 59.7 45 44.4
Sabra17G0060500 Salix brachista HOM05D003353 ORTHO05D003751 1.0e-06 59.7 49 40.8
Sed0025110 Sechium edule HOM05D002415 ORTHO05D002522 1.0e-06 59.7 51 43.1
CANSAT21G0629 Cannabis sativa HOM05D002415 ORTHO05D002522 1.3e-06 59.3 61 36.1
Cfa007435 Carpinus fangiana HOM05D003353 ORTHO05D003751 1.3e-06 59.3 50 40.0
Haze_14661 Corylus avellana HOM05D003353 ORTHO05D003751 1.3e-06 59.3 50 40.0
DCAR_021679 Daucus carota HOM05D003353 ORTHO05D003751 1.3e-06 59.3 76 32.9
Lalb_Chr21g0319411 Lupinus albus HOM05D003353 ORTHO05D003751 1.3e-06 59.3 50 40.0
MD17G1035500 Malus domestica HOM05D003353 ORTHO05D003751 1.3e-06 59.3 50 40.0
Potri.017G072460 Populus trichocarpa HOM05D003353 ORTHO05D003751 1.3e-06 59.3 49 40.8
Prupe.3G283100 Prunus persica HOM05D003353 ORTHO05D003751 1.3e-06 59.3 50 40.0
SMO117G0282 Selaginella moellendorffii HOM05D003999 ORTHO05D005219 1.3e-06 59.3 52 42.3
Atru.chr13.1596 Acer truncatum HOM05D004258 ORTHO05D005163 1.8e-06 58.9 54 44.4
CSS0023308 Camellia sinensis var. sinensis HOM05D002415 ORTHO05D002522 1.8e-06 58.9 50 40.0
CSS0037563 Camellia sinensis var. sinensis HOM05D002415 ORTHO05D002522 1.8e-06 58.9 50 40.0
Carub.0006s3195 Capsella rubella HOM05D004447 ORTHO05D005973 1.8e-06 58.9 59 42.4
Cpa.g.sc84.65 Carica papaya HOM05D004447 ORTHO05D005973 1.8e-06 58.9 49 44.9
Duzib147G1510 Durio zibethinus HOM05D003353 ORTHO05D003751 1.8e-06 58.9 49 40.8
Gohir.A09G026000 Gossypium hirsutum HOM05D003353 ORTHO05D003751 1.8e-06 58.9 49 40.8
Gohir.D09G025300 Gossypium hirsutum HOM05D003353 ORTHO05D003751 1.8e-06 58.9 49 40.8
Gorai.006G029600 Gossypium raimondii HOM05D003353 ORTHO05D003751 1.8e-06 58.9 49 40.8
Lalb_Chr11g0066231 Lupinus albus HOM05D004258 ORTHO05D005163 1.8e-06 58.9 49 38.8
Nitab4.5_0005326g0040 Nicotiana tabacum HOM05D002415 ORTHO05D002522 1.8e-06 58.9 50 40.0
PSO063G1257 Papaver somniferum HOM05D002415 ORTHO05D002522 1.8e-06 58.9 77 33.8
Sp6g04850 Schrenkiella parvula HOM05D004447 ORTHO05D005973 1.8e-06 58.9 51 49.0
SEGI_29375 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 1.8e-06 58.9 54 44.4
Sc06g0000060 Simmondsia chinensis HOM05D003353 ORTHO05D003751 1.8e-06 58.9 45 44.4
Sc06g0001590 Simmondsia chinensis HOM05D003353 ORTHO05D003751 1.8e-06 58.9 45 44.4
Thhalv10029404m.g Eutrema salsugineum HOM05D004447 ORTHO05D005973 2.3e-06 58.5 51 49.0
Mapoly0041s0101 Marchantia polymorpha HOM05D004447 ORTHO05D005973 2.3e-06 58.5 51 43.1
MCO16G013 Micromonas commoda HOM05D000329 ORTHO05D000833 2.3e-06 58.5 50 44.0
PSO170G0223 Papaver somniferum HOM05D002415 ORTHO05D002522 2.3e-06 58.5 77 33.8
Pp3c8_18540 Physcomitrium patens HOM05D002415 ORTHO05D002522 2.3e-06 58.5 58 39.7
PGR142G1415 Punica granatum HOM05D003353 ORTHO05D003751 2.3e-06 58.5 50 40.0
Sed0014882 Sechium edule HOM05D002415 ORTHO05D002522 2.3e-06 58.5 51 39.2
Thecc.04G008000 Theobroma cacao HOM05D003353 ORTHO05D003751 2.3e-06 58.5 50 38.0
TAR371G0580 Trochodendron aralioides HOM05D003353 ORTHO05D003751 2.3e-06 58.5 45 44.4
Aa31LG9G10020 Aethionema arabicum HOM05D004447 ORTHO05D005973 3.0e-06 58.2 53 39.6
ATR0691G050 Amborella trichopoda HOM05D003353 ORTHO05D003751 3.0e-06 58.2 45 44.4
ATR0757G102 Amborella trichopoda HOM05D002415 ORTHO05D002522 3.0e-06 58.2 49 42.9
AagrBONN_evm.TU.Sc2ySwM_368.1065 Anthoceros agrestis HOM05D004447 ORTHO05D005973 3.0e-06 58.2 54 42.6
CANSAT64G0328 Cannabis sativa HOM05D003353 ORTHO05D003751 3.0e-06 58.2 49 40.8
Cfa009137 Carpinus fangiana HOM05D003353 ORTHO05D003751 3.0e-06 58.2 45 40.0
CiPaw.03G037100 Carya illinoinensis HOM05D003353 ORTHO05D003751 3.0e-06 58.2 49 40.8
AUR62006060 Chenopodium quinoa HOM05D002415 ORTHO05D002522 3.0e-06 58.2 51 37.3
PSO170G1843 Papaver somniferum HOM05D004258 ORTHO05D005163 3.0e-06 58.2 45 44.4
PSO528G0114 Papaver somniferum HOM05D004258 ORTHO05D005163 3.0e-06 58.2 45 44.4
Pp3c1_860 Physcomitrium patens HOM05D003353 ORTHO05D003751 3.0e-06 58.2 57 42.1
Pp3c5_19640 Physcomitrium patens HOM05D003353 ORTHO05D003751 3.0e-06 58.2 71 33.8
Sopen05g001650 Solanum pennellii HOM05D003353 ORTHO05D003751 3.0e-06 58.2 48 39.6
TAR629G0276 Trochodendron aralioides HOM05D003353 ORTHO05D003751 3.0e-06 58.2 45 44.4
vmacro05816 Vaccinium macrocarpon HOM05D003353 ORTHO05D003751 3.0e-06 58.2 49 42.9
Zm00001eb260200 Zea mays HOM05D004258 ORTHO05D005163 3.0e-06 58.2 49 46.9
AagrBONN_evm.TU.Sc2ySwM_368.1853 Anthoceros agrestis HOM05D000465 ORTHO05D000301 3.9e-06 57.8 47 44.7
AT4G14700 Arabidopsis thaliana HOM05D004447 ORTHO05D005973 3.9e-06 57.8 50 40.0
Cc02_g01230 Coffea canephora HOM05D002415 ORTHO05D002522 3.9e-06 57.8 74 35.1
Hma1.2p1_0707F.1_g207050 Hydrangea macrophylla HOM05D002415 ORTHO05D002522 3.9e-06 57.8 50 42.0
MD03G1176600 Malus domestica HOM05D004447 ORTHO05D005973 3.9e-06 57.8 66 36.4
VMungo1080G0814 Vigna mungo HOM05D004447 ORTHO05D005973 3.9e-06 57.8 49 46.9
MSTRG.21381 Avicennia marina HOM05D004447 ORTHO05D005973 5.1e-06 57.4 49 40.8
Haze_25128 Corylus avellana HOM05D002415 ORTHO05D002522 5.1e-06 57.4 51 37.3
DCAR_007093 Daucus carota HOM05D003353 ORTHO05D003751 5.1e-06 57.4 45 42.2
ECA199G0007 Erigeron canadensis HOM05D003353 ORTHO05D003751 5.1e-06 57.4 49 42.9
ECA240G0372 Erigeron canadensis HOM05D003999 ORTHO05D005219 5.1e-06 57.4 51 39.2
Glyma.13G170000 Glycine max HOM05D003353 ORTHO05D003751 5.1e-06 57.4 47 42.6
Nn4g22008 Nelumbo nucifera HOM05D003353 ORTHO05D003751 5.1e-06 57.4 45 42.2
Nn4g22812 Nelumbo nucifera HOM05D003353 ORTHO05D003751 5.1e-06 57.4 45 42.2
Pp3c2_35750 Physcomitrium patens HOM05D003353 ORTHO05D003751 5.1e-06 57.4 57 42.1
Zm00001eb145630 Zea mays HOM05D004258 ORTHO05D005163 5.1e-06 57.4 50 40.0
DCAR_031098 Daucus carota HOM05D003353 ORTHO05D003751 6.7e-06 57.0 45 42.2
ECA238G2949 Erigeron canadensis HOM05D000104 ORTHO05D006385 6.7e-06 57.0 46 54.3
FvH4_2g28030 Fragaria vesca HOM05D004258 ORTHO05D005163 6.7e-06 57.0 46 50.0
FAN20G3077 Fragaria x ananassa HOM05D004258 ORTHO05D005163 6.7e-06 57.0 46 50.0
FAN24G0072 Fragaria x ananassa HOM05D004258 ORTHO05D005163 6.7e-06 57.0 46 50.0
FAN27G1652 Fragaria x ananassa HOM05D004258 ORTHO05D005163 6.7e-06 57.0 46 50.0
Lsat_1_v5_gn_4_6960 Lactuca sativa HOM05D003353 ORTHO05D003751 6.7e-06 57.0 45 44.4
Nn8g40781 Nelumbo nucifera HOM05D003999 ORTHO05D005219 6.7e-06 57.0 47 42.6
Sabra12G0014200 Salix brachista HOM05D002415 ORTHO05D002522 6.7e-06 57.0 50 38.0
SHI25551 Sapria himalayana HOM05D003353 ORTHO05D003751 6.7e-06 57.0 45 42.2
SEGI_35053 Sequoiadendron giganteum HOM05D003353 ORTHO05D003751 6.7e-06 57.0 45 42.2
TWI34G1954 Tripterygium wilfordii HOM05D003999 ORTHO05D005219 6.7e-06 57.0 57 36.8
Aqoxy3G01754 Aquilegia oxysepala HOM05D004258 ORTHO05D005163 8.7e-06 56.6 48 43.8
A07p42810 Brassica napus HOM05D004258 ORTHO05D005163 8.7e-06 56.6 47 44.7
C06p51420 Brassica napus HOM05D004258 ORTHO05D005163 8.7e-06 56.6 47 44.7
BolC6t40160H Brassica oleracea HOM05D004258 ORTHO05D005163 8.7e-06 56.6 47 44.7
BraA07t31801Z Brassica rapa HOM05D004258 ORTHO05D005163 8.7e-06 56.6 47 44.7
Cpa.g.sc215.4 Carica papaya HOM05D003353 ORTHO05D003751 8.7e-06 56.6 47 40.4
Haze_26150 Corylus avellana HOM05D000104 ORTHO05D003467 8.7e-06 56.6 47 42.6
Dinv35355 Davidia involucrata HOM05D002415 ORTHO05D002522 8.7e-06 56.6 45 44.4
ECA233G2073 Erigeron canadensis HOM05D003353 ORTHO05D003751 8.7e-06 56.6 45 44.4
Migut.L01407 Erythranthe guttata HOM05D003353 ORTHO05D003751 8.7e-06 56.6 45 42.2
Thhalv10004504m.g Eutrema salsugineum HOM05D002415 ORTHO05D002522 8.7e-06 56.6 73 34.2
FAN15G0778 Fragaria x ananassa HOM05D004258 ORTHO05D005163 8.7e-06 56.6 46 47.8
FAN15G1038 Fragaria x ananassa HOM05D004258 ORTHO05D005163 8.7e-06 56.6 46 47.8
HanXRQChr12g0368561 Helianthus annuus HOM05D003353 ORTHO05D003751 8.7e-06 56.6 45 44.4
Lsat_1_v5_gn_4_182161 Lactuca sativa HOM05D003353 ORTHO05D003751 8.7e-06 56.6 49 40.8
Lalb_Chr06g0176091 Lupinus albus HOM05D003353 ORTHO05D003751 8.7e-06 56.6 45 42.2
Manes.15G182800 Manihot esculenta HOM05D003353 ORTHO05D003751 8.7e-06 56.6 45 42.2
MCO03G197 Micromonas commoda HOM05D003353 ORTHO05D003751 8.7e-06 56.6 46 41.3
Nn3g16906 Nelumbo nucifera HOM05D003353 ORTHO05D003751 8.7e-06 56.6 45 42.2
Oeu056394.4 Olea europaea HOM05D003353 ORTHO05D003751 8.7e-06 56.6 45 42.2
Os01g0883400 Oryza sativa ssp. japonica HOM05D004258 ORTHO05D005163 8.7e-06 56.6 50 40.0
Pp3c6_8120 Physcomitrium patens HOM05D003353 ORTHO05D003751 8.7e-06 56.6 45 44.4
Hund12469 Selenicereus undatus HOM05D003353 ORTHO05D003751 8.7e-06 56.6 45 42.2
Solyc03g006420.4 Solanum lycopersicum HOM05D004447 ORTHO05D005973 8.7e-06 56.6 60 36.7
Sopen03g002430 Solanum pennellii HOM05D004447 ORTHO05D005973 8.7e-06 56.6 60 36.7
PGSC0003DMG401012812 Solanum tuberosum HOM05D004447 ORTHO05D005973 8.7e-06 56.6 60 36.7
SGA_v2.0_scaffold247G44874 Striga asiatica HOM05D004447 ORTHO05D005973 8.7e-06 56.6 56 37.5
vmacro16257 Vaccinium macrocarpon HOM05D003353 ORTHO05D003751 8.7e-06 56.6 45 42.2
HPP92_008854 Vanilla planifolia HOM05D003353 ORTHO05D003751 8.7e-06 56.6 45 42.2


User provided reference genes

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