Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g22285 Chara braunii HOM05D033216 ORTHO05D034294 0.0e+00 1619.4 893 100.0
CBR_g22287 Chara braunii HOM05D033216 ORTHO05D034294 0.0e+00 1445.3 1000 83.6
CBR_g22288 Chara braunii HOM05D033216 ORTHO05D034294 5.8e-220 768.5 491 90.4
TAR633G0639 Trochodendron aralioides HOM05D002084 ORTHO05D002031 6.4e-17 94.0 120 34.2
HPP92_007157 Vanilla planifolia HOM05D002084 ORTHO05D002031 3.2e-16 91.7 144 34.7
Nn2g14024 Nelumbo nucifera HOM05D002084 ORTHO05D002031 1.2e-15 89.7 156 33.3
Nn1g02724 Nelumbo nucifera HOM05D002084 ORTHO05D002031 1.6e-15 89.4 155 34.2
Os04g0185100 Oryza sativa ssp. japonica HOM05D002084 ORTHO05D002031 4.6e-15 87.8 150 32.0
AUR62024731 Chenopodium quinoa HOM05D002084 ORTHO05D002031 2.3e-14 85.5 146 30.1
Gohir.A07G211800 Gossypium hirsutum HOM05D002084 ORTHO05D002031 3.0e-14 85.1 133 35.3
Manes.12G031300 Manihot esculenta HOM05D002084 ORTHO05D002031 5.0e-14 84.3 131 32.1
TWI12G1429 Tripterygium wilfordii HOM05D002084 ORTHO05D002031 6.6e-14 84.0 120 31.7
AUR62011890 Chenopodium quinoa HOM05D002084 ORTHO05D002031 8.6e-14 83.6 149 28.9
Pp3c19_14180 Physcomitrium patens HOM05D002084 ORTHO05D002031 8.6e-14 83.6 151 33.1
Pp3c19_14181 Physcomitrium patens HOM05D002084 ORTHO05D002031 8.6e-14 83.6 151 33.1
Thecc.01G260600 Theobroma cacao HOM05D002084 ORTHO05D002031 1.1e-13 83.2 136 33.8
Peaxi162Scf00018g02016 Petunia axillaris HOM05D002084 ORTHO05D002031 1.5e-13 82.8 155 32.3
COL.COLO4_05172 Corchorus olitorius HOM05D002084 ORTHO05D002031 1.9e-13 82.4 131 34.4
CDE06G2366 Ceratophyllum demersum HOM05D002084 ORTHO05D002031 2.5e-13 82.0 131 31.3
Duzib138G0341 Durio zibethinus HOM05D002084 ORTHO05D002031 2.5e-13 82.0 135 31.9
Sopen01g002140 Solanum pennellii HOM05D002084 ORTHO05D002031 2.5e-13 82.0 143 38.5
TAR362G0949 Trochodendron aralioides HOM05D002084 ORTHO05D002031 2.5e-13 82.0 134 29.9
CDE06G0319 Ceratophyllum demersum HOM05D002084 ORTHO05D002031 3.3e-13 81.6 131 31.3
Gohir.D07G218000 Gossypium hirsutum HOM05D002084 ORTHO05D002031 3.3e-13 81.6 146 33.6
Gorai.001G252100 Gossypium raimondii HOM05D002084 ORTHO05D002031 3.3e-13 81.6 146 33.6
Manes.04G076400 Manihot esculenta HOM05D002084 ORTHO05D002031 4.3e-13 81.3 130 31.5
QL02p059458 Quercus lobata HOM05D002084 ORTHO05D002031 4.3e-13 81.3 153 26.8
arahy.Tifrunner.gnm1.ann1.JT4IXE Arachis hypogaea HOM05D002084 ORTHO05D002031 5.6e-13 80.9 120 30.8
Potri.002G040100 Populus trichocarpa HOM05D002084 ORTHO05D002031 5.6e-13 80.9 136 28.7
QL03p020315 Quercus lobata HOM05D002084 ORTHO05D002031 7.3e-13 80.5 154 26.6
Eucgr.K03269 Eucalyptus grandis HOM05D002084 ORTHO05D002031 9.5e-13 80.1 131 32.1
GSVIVG01028303001 Vitis vinifera HOM05D002084 ORTHO05D002031 9.5e-13 80.1 141 28.4
Duzib133G1121 Durio zibethinus HOM05D002084 ORTHO05D002031 1.2e-12 79.7 134 32.1
QL09p009162 Quercus lobata HOM05D002084 ORTHO05D002031 1.2e-12 79.7 154 26.0
Sc10g0003680 Simmondsia chinensis HOM05D002084 ORTHO05D002031 1.6e-12 79.3 127 29.1
Solyc01g006140.4 Solanum lycopersicum HOM05D002084 ORTHO05D002031 1.6e-12 79.3 138 38.4
Zm00001eb377000 Zea mays HOM05D002084 ORTHO05D002031 1.6e-12 79.3 141 33.3
CANSAT25G3490 Cannabis sativa HOM05D002084 ORTHO05D002031 2.1e-12 79.0 120 30.8
PGR044G1008 Punica granatum HOM05D002084 ORTHO05D002031 2.1e-12 79.0 137 27.0
Hund02906 Selenicereus undatus HOM05D002084 ORTHO05D002031 2.1e-12 79.0 127 26.0
THA.LOC104826211 Tarenaya hassleriana HOM05D002084 ORTHO05D002031 6.2e-12 77.4 148 32.4
TWI75G1405 Tripterygium wilfordii HOM05D002084 ORTHO05D002031 6.2e-12 77.4 120 30.8
Gohir.D11G135500 Gossypium hirsutum HOM05D002084 ORTHO05D002031 8.0e-12 77.0 140 30.7
Gorai.007G145100 Gossypium raimondii HOM05D002084 ORTHO05D002031 8.0e-12 77.0 140 30.7
Medtr1g070170 Medicago truncatula HOM05D002084 ORTHO05D002031 8.0e-12 77.0 134 29.1
Sabra02G0032100 Salix brachista HOM05D002084 ORTHO05D002031 8.0e-12 77.0 163 25.2
CiPaw.03G262500 Carya illinoinensis HOM05D002084 ORTHO05D002031 1.0e-11 76.6 163 27.6
Haze_24608 Corylus avellana HOM05D002084 ORTHO05D002031 1.0e-11 76.6 120 30.0
EL10Ac5g10416 Beta vulgaris HOM05D002084 ORTHO05D002031 1.8e-11 75.9 139 28.1
Gohir.A11G129800 Gossypium hirsutum HOM05D002084 ORTHO05D002031 1.8e-11 75.9 136 30.1
THA.LOC104800876 Tarenaya hassleriana HOM05D002084 ORTHO05D002031 1.8e-11 75.9 158 27.8
MSTRG.21501 Avicennia marina HOM05D002084 ORTHO05D002031 2.3e-11 75.5 135 34.8
AUR62025682 Chenopodium quinoa HOM05D002084 ORTHO05D002031 3.1e-11 75.1 140 28.6
Lj5g0022506 Lotus japonicus HOM05D002084 ORTHO05D002031 3.1e-11 75.1 133 28.6
Ca_09690_v3 Cicer arietinum L. HOM05D002084 ORTHO05D002031 4.0e-11 74.7 129 31.0
AUR62001297 Chenopodium quinoa HOM05D002084 ORTHO05D002031 5.2e-11 74.3 150 25.3
Nitab4.5_0001327g0080 Nicotiana tabacum HOM05D002084 ORTHO05D002031 5.2e-11 74.3 146 32.2
RcHm_v2.0_Chr6g0288401 Rosa chinensis HOM05D002084 ORTHO05D002031 5.2e-11 74.3 151 29.8
THA.LOC104825264 Tarenaya hassleriana HOM05D002084 ORTHO05D002031 6.8e-11 73.9 124 29.8
Ah.11g049640 Amaranthus hybridus HOM05D002084 ORTHO05D002031 8.9e-11 73.6 152 25.7
Dinv34608 Davidia involucrata HOM05D002084 ORTHO05D002031 8.9e-11 73.6 109 34.9
SEGI_27913 Sequoiadendron giganteum HOM05D002084 ORTHO05D002031 8.9e-11 73.6 189 28.6
Cpa.g.sc50.34 Carica papaya HOM05D002084 ORTHO05D002031 1.2e-10 73.2 138 29.0
Dinv22417 Davidia involucrata HOM05D002084 ORTHO05D002031 1.5e-10 72.8 108 30.6
Nitab4.5_0000326g0050 Nicotiana tabacum HOM05D002084 ORTHO05D002031 1.5e-10 72.8 129 29.5
Pp3c22_17580 Physcomitrium patens HOM05D002084 ORTHO05D002031 1.5e-10 72.8 184 27.2
SHI09839 Sapria himalayana HOM05D002084 ORTHO05D002031 1.5e-10 72.8 137 31.4
Hund16384 Selenicereus undatus HOM05D002084 ORTHO05D002031 1.5e-10 72.8 130 30.8
Ciclev10019292m.g Citrus clementina HOM05D002084 ORTHO05D002031 2.0e-10 72.4 142 25.4
Lj2C1154T3 Lonicera japonica HOM05D002084 ORTHO05D002031 2.0e-10 72.4 138 28.3
TPR.G3552 Trifolium pratense HOM05D002084 ORTHO05D002031 2.0e-10 72.4 134 27.6
Atru.chr5.1647 Acer truncatum HOM05D002084 ORTHO05D002031 2.6e-10 72.0 130 28.5
SEGI_38270 Sequoiadendron giganteum HOM05D002084 ORTHO05D002031 2.6e-10 72.0 188 27.1
Migut.K00217 Erythranthe guttata HOM05D002084 ORTHO05D002031 3.4e-10 71.6 137 33.6
Phvul.007G194400 Phaseolus vulgaris HOM05D002084 ORTHO05D002031 3.4e-10 71.6 135 30.4
ECA247G3646 Erigeron canadensis HOM05D002084 ORTHO05D002031 4.4e-10 71.2 130 27.7
MBI17_g07969_MAGBIO Magnolia biondii HOM05D002084 ORTHO05D002031 4.4e-10 71.2 154 26.6
Aa31LG1G7150 Aethionema arabicum HOM05D002084 ORTHO05D002031 5.8e-10 70.9 147 27.2
Prupe.8G225500 Prunus persica HOM05D002084 ORTHO05D002031 5.8e-10 70.9 144 30.6
MD05G1199700 Malus domestica HOM05D002084 ORTHO05D002031 7.5e-10 70.5 144 32.6
Actinidia08529 Actinidia chinensis HOM05D002084 ORTHO05D002031 9.8e-10 70.1 128 28.9
BcaB02g10368 Brassica carinata HOM05D002084 ORTHO05D002031 9.8e-10 70.1 172 28.5
ClCG07G000960 Citrullus lanatus HOM05D002084 ORTHO05D002031 9.8e-10 70.1 150 30.0
unitig_0.g777 Utricularia gibba HOM05D002084 ORTHO05D002031 9.8e-10 70.1 146 30.1
ATR0680G370 Amborella trichopoda HOM05D002084 ORTHO05D002031 1.3e-09 69.7 196 25.5
EL10Ac7g18099 Beta vulgaris HOM05D002084 ORTHO05D002031 1.3e-09 69.7 117 28.2
Nitab4.5_0009021g0010 Nicotiana tabacum HOM05D002084 ORTHO05D002031 1.3e-09 69.7 138 36.2
BcaB02g08453 Brassica carinata HOM05D002084 ORTHO05D002031 1.7e-09 69.3 100 33.0
HanXRQChr15g0467931 Helianthus annuus HOM05D002084 ORTHO05D002031 1.7e-09 69.3 130 30.0
SMO364G0709 Selaginella moellendorffii HOM05D002084 ORTHO05D002031 1.7e-09 69.3 114 34.2
Aqoxy2G03277 Aquilegia oxysepala HOM05D002084 ORTHO05D002031 2.2e-09 68.9 152 30.3
Aa31LG5G5680 Aethionema arabicum HOM05D002084 ORTHO05D002031 2.9e-09 68.6 116 34.5
BcaB06g28440 Brassica carinata HOM05D002084 ORTHO05D002031 2.9e-09 68.6 176 26.1
CDE02G0592 Ceratophyllum demersum HOM05D002084 ORTHO05D002031 2.9e-09 68.6 112 29.5
Hma1.2p1_0273F.1_g109850 Hydrangea macrophylla HOM05D002084 ORTHO05D002031 2.9e-09 68.6 218 28.0
Lalb_Chr21g0313811 Lupinus albus HOM05D002084 ORTHO05D002031 2.9e-09 68.6 156 26.3
Prupe.8G217800 Prunus persica HOM05D002084 ORTHO05D002031 3.7e-09 68.2 122 29.5
A05p14470 Brassica napus HOM05D002084 ORTHO05D002031 4.9e-09 67.8 181 24.9
BraA05t20376Z Brassica rapa HOM05D002084 ORTHO05D002031 4.9e-09 67.8 181 24.9
CAN.G140.25 Capsicum annuum HOM05D002084 ORTHO05D002031 4.9e-09 67.8 130 32.3
Cfa002408 Carpinus fangiana HOM05D002084 ORTHO05D002031 4.9e-09 67.8 107 32.7
SGA_v2.0_scaffold138G35250 Striga asiatica HOM05D002084 ORTHO05D002031 4.9e-09 67.8 143 32.2
CARHR124860 Cardamine hirsuta HOM05D002084 ORTHO05D002031 6.4e-09 67.4 175 25.7
Sed0018460 Sechium edule HOM05D002084 ORTHO05D002031 6.4e-09 67.4 154 28.6
BcaC02g11206 Brassica carinata HOM05D002084 ORTHO05D002031 8.3e-09 67.0 181 24.9
C04p19240 Brassica napus HOM05D002084 ORTHO05D002031 8.3e-09 67.0 181 24.9
BolC4t23457H Brassica oleracea HOM05D002084 ORTHO05D002031 8.3e-09 67.0 181 24.9
Carub.0004s1254 Capsella rubella HOM05D002084 ORTHO05D002031 8.3e-09 67.0 177 27.1
Nitab4.5_0000326g0070 Nicotiana tabacum HOM05D002084 ORTHO05D002031 8.3e-09 67.0 129 27.1
Solyc06g008510.3 Solanum lycopersicum HOM05D002084 ORTHO05D002031 8.3e-09 67.0 157 31.2
BcaB01g04051 Brassica carinata HOM05D002084 ORTHO05D002031 1.1e-08 66.6 133 28.6
BcaC02g09698 Brassica carinata HOM05D002084 ORTHO05D002031 1.1e-08 66.6 96 32.3
Lalb_Chr02g0152301 Lupinus albus HOM05D002084 ORTHO05D002031 1.1e-08 66.6 159 30.2
Sopen06g003280 Solanum pennellii HOM05D002084 ORTHO05D002031 1.1e-08 66.6 157 31.2
Nitab4.5_0000086g0110 Nicotiana tabacum HOM05D002084 ORTHO05D002031 1.4e-08 66.2 108 27.8
AL4G26490 Arabidopsis lyrata HOM05D002084 ORTHO05D002031 1.9e-08 65.9 131 28.2
BcaC02g09048 Brassica carinata HOM05D002084 ORTHO05D002031 1.9e-08 65.9 100 31.0
BolC4t25356H Brassica oleracea HOM05D002084 ORTHO05D002031 1.9e-08 65.9 100 31.0
Cpa.g.sc233.13 Carica papaya HOM05D002084 ORTHO05D002031 1.9e-08 65.9 138 31.2
Sp4g13750 Schrenkiella parvula HOM05D002084 ORTHO05D002031 1.9e-08 65.9 178 27.0
FvH4_2g21720 Fragaria vesca HOM05D002084 ORTHO05D002031 2.4e-08 65.5 114 28.1
Oeu060955.2 Olea europaea HOM05D002084 ORTHO05D002031 2.4e-08 65.5 139 30.9
Peaxi162Scf00441g00218 Petunia axillaris HOM05D002084 ORTHO05D002031 2.4e-08 65.5 143 27.3
VMungo1309G2434 Vigna mungo HOM05D002084 ORTHO05D002031 2.4e-08 65.5 156 27.6
Phvul.009G001100 Phaseolus vulgaris HOM05D002084 ORTHO05D002031 3.2e-08 65.1 173 24.3
vmacro02652 Vaccinium macrocarpon HOM05D002084 ORTHO05D002031 3.2e-08 65.1 117 29.9
BcaC01g05962 Brassica carinata HOM05D002084 ORTHO05D002031 4.1e-08 64.7 133 27.1
BolC4t25326H Brassica oleracea HOM05D002084 ORTHO05D002031 4.1e-08 64.7 96 31.2
A03p17470 Brassica napus HOM05D002084 ORTHO05D002031 5.4e-08 64.3 144 25.7
C04p37610 Brassica napus HOM05D002084 ORTHO05D002031 5.4e-08 64.3 177 26.6
BraA03t11020Z Brassica rapa HOM05D002084 ORTHO05D002031 5.4e-08 64.3 144 25.7
FAN24G0479 Fragaria x ananassa HOM05D002084 ORTHO05D002031 5.4e-08 64.3 127 27.6
FAN27G3115 Fragaria x ananassa HOM05D002084 ORTHO05D002031 5.4e-08 64.3 135 27.4
FAN27G3355 Fragaria x ananassa HOM05D002084 ORTHO05D002031 5.4e-08 64.3 135 27.4
Nitab4.5_0005477g0030 Nicotiana tabacum HOM05D002084 ORTHO05D002031 5.4e-08 64.3 103 38.8
AL4G26500 Arabidopsis lyrata HOM05D002084 ORTHO05D002031 7.0e-08 63.9 139 26.6
BcaB06g28521 Brassica carinata HOM05D002084 ORTHO05D002031 7.0e-08 63.9 168 26.2
CiPaw.04G185600 Carya illinoinensis HOM05D002084 ORTHO05D002031 7.0e-08 63.9 154 24.7
CsaV3_3G022530 Cucumis sativus L. HOM05D002084 ORTHO05D002031 7.0e-08 63.9 125 29.6
CsaV3_3G022540 Cucumis sativus L. HOM05D002084 ORTHO05D002031 7.0e-08 63.9 125 29.6
Prupe.8G189500 Prunus persica HOM05D002084 ORTHO05D002031 7.0e-08 63.9 122 30.3
Sp5g07740 Schrenkiella parvula HOM05D002084 ORTHO05D002031 7.0e-08 63.9 149 25.5
C04p37800 Brassica napus HOM05D002084 ORTHO05D002031 9.2e-08 63.5 100 30.0
FAN15G1144 Fragaria x ananassa HOM05D002084 ORTHO05D002031 9.2e-08 63.5 135 27.4
Glyma.10G035700 Glycine max HOM05D002084 ORTHO05D002031 9.2e-08 63.5 129 25.6
PSO170G3910 Papaver somniferum HOM05D002084 ORTHO05D002031 9.2e-08 63.5 134 27.6
Sed0024965 Sechium edule HOM05D002084 ORTHO05D002031 9.2e-08 63.5 153 26.1
Aa31sc13G110 Aethionema arabicum HOM05D002084 ORTHO05D002031 1.2e-07 63.2 178 24.7
AT2G31270 Arabidopsis thaliana HOM05D002084 ORTHO05D002031 1.2e-07 63.2 175 25.7
AT3G54710 Arabidopsis thaliana HOM05D002084 ORTHO05D002031 1.2e-07 63.2 100 32.0
MELO3C012906.2 Cucumis melo HOM05D002084 ORTHO05D002031 1.2e-07 63.2 111 31.5
AL5G35790 Arabidopsis lyrata HOM05D002084 ORTHO05D002031 1.6e-07 62.8 99 30.3
arahy.Tifrunner.gnm1.ann1.5K77QF Arachis hypogaea HOM05D002084 ORTHO05D002031 1.6e-07 62.8 94 28.7
C04p60780 Brassica napus HOM05D002084 ORTHO05D002031 2.0e-07 62.4 176 25.0
BolC4t27569H Brassica oleracea HOM05D002084 ORTHO05D002031 2.0e-07 62.4 176 25.0
MELO3C023727.2 Cucumis melo HOM05D002084 ORTHO05D002031 2.0e-07 62.4 120 30.0
PSO782G2204 Papaver somniferum HOM05D002084 ORTHO05D002031 2.0e-07 62.4 134 27.6
SGA_v2.0_scaffold1G00602 Striga asiatica HOM05D005591 ORTHO05D002031 2.0e-07 62.4 128 30.5
MD10G1178300 Malus domestica HOM05D002084 ORTHO05D002031 2.7e-07 62.0 148 31.1
Psat6g055280 Pisum sativum HOM05D002084 ORTHO05D002031 2.7e-07 62.0 140 28.6
Potri.005G222700 Populus trichocarpa HOM05D002084 ORTHO05D002031 2.7e-07 62.0 399 22.3
A04p05110 Brassica napus HOM05D002084 ORTHO05D002031 3.5e-07 61.6 100 30.0
Rhsim01G0265300 Rhododendron simsii HOM05D002084 ORTHO05D002031 3.5e-07 61.6 188 22.9
SalBow1G3741 Salvia bowleyana HOM05D002084 ORTHO05D002031 3.5e-07 61.6 128 27.3
BcaC01g05963 Brassica carinata HOM05D002084 ORTHO05D002031 6.0e-07 60.8 160 26.2
C03p20650 Brassica napus HOM05D002084 ORTHO05D002031 6.0e-07 60.8 160 26.2
BolC3t14459H Brassica oleracea HOM05D002084 ORTHO05D002031 6.0e-07 60.8 160 26.2
BraA04t16222Z Brassica rapa HOM05D002084 ORTHO05D002031 6.0e-07 60.8 100 30.0
Glyma.13G122100 Glycine max HOM05D002084 ORTHO05D002031 7.8e-07 60.5 129 24.0
HanXRQChr10g0281071 Helianthus annuus HOM05D002084 ORTHO05D002031 7.8e-07 60.5 161 24.2
CARHR164630 Cardamine hirsuta HOM05D002084 ORTHO05D002031 1.0e-06 60.1 144 28.5
Sabra05G0171400 Salix brachista HOM05D002084 ORTHO05D002031 1.0e-06 60.1 416 21.9
Ah.02g125670 Amaranthus hybridus HOM05D002084 ORTHO05D002031 1.3e-06 59.7 119 26.1
Cc01_g18450 Coffea canephora HOM05D002084 ORTHO05D002031 1.3e-06 59.7 150 25.3
vmacro17191 Vaccinium macrocarpon HOM05D002084 ORTHO05D002031 1.7e-06 59.3 267 21.7
MD05G1158100 Malus domestica HOM05D002084 ORTHO05D002031 2.3e-06 58.9 121 28.1
PSO478G1725 Papaver somniferum HOM05D002084 ORTHO05D002031 2.3e-06 58.9 134 26.1
PSO782G4650 Papaver somniferum HOM05D002084 ORTHO05D002031 3.9e-06 58.2 104 30.8
MSTRG.18315 Avicennia marina HOM05D002084 ORTHO05D002031 5.0e-06 57.8 119 25.2
Peaxi162Scf00134g00713 Petunia axillaris HOM05D002084 ORTHO05D002031 5.0e-06 57.8 96 27.1
EL10Ac6g15650 Beta vulgaris HOM05D002084 ORTHO05D002031 6.6e-06 57.4 102 31.4


User provided reference genes

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