Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g17932 Chara braunii HOM05D004364 ORTHO05D006299 1.6e-269 932.2 465 100.0
Pp3c19_17130 Physcomitrium patens HOM05D004364 ORTHO05D006299 1.3e-143 513.8 377 68.7
Mapoly0028s0083 Marchantia polymorpha HOM05D004364 ORTHO05D006299 2.0e-139 500.0 390 63.8
SEGI_22005 Sequoiadendron giganteum HOM05D004364 ORTHO05D006299 3.8e-138 495.7 512 52.5
SMO347G0465 Selaginella moellendorffii HOM05D004364 ORTHO05D006299 6.9e-132 474.9 460 54.3
Nn1g06827 Nelumbo nucifera HOM05D004364 ORTHO05D006299 7.9e-128 461.5 404 59.4
PGR083G1074 Punica granatum HOM05D004364 ORTHO05D006299 2.3e-127 459.9 416 57.7
TAR626G1658 Trochodendron aralioides HOM05D004364 ORTHO05D006299 3.0e-127 459.5 404 59.2
MD11G1234900 Malus domestica HOM05D004364 ORTHO05D006299 4.3e-126 455.7 374 61.0
Lalb_Chr06g0175311 Lupinus albus HOM05D004364 ORTHO05D006299 5.7e-126 455.3 417 55.9
Lalb_Chr02g0159341 Lupinus albus HOM05D004364 ORTHO05D006299 1.3e-125 454.1 417 55.6
Medtr2g081180 Medicago truncatula HOM05D004364 ORTHO05D006299 1.3e-125 454.1 418 56.0
CANSAT11G0334 Cannabis sativa HOM05D004364 ORTHO05D006299 1.6e-125 453.8 471 52.2
SalBow7G1127 Salvia bowleyana HOM05D004364 ORTHO05D006299 1.6e-125 453.8 378 60.3
A03p41850 Brassica napus HOM05D004364 ORTHO05D006299 2.8e-125 453.0 454 53.7
Oeu060533.1 Olea europaea HOM05D004364 ORTHO05D006299 2.8e-125 453.0 370 61.1
MD03G1217200 Malus domestica HOM05D004364 ORTHO05D006299 3.7e-125 452.6 417 56.8
Migut.H01895 Erythranthe guttata HOM05D004364 ORTHO05D006299 8.2e-125 451.4 378 59.5
BraA03t13338Z Brassica rapa HOM05D004364 ORTHO05D006299 1.1e-124 451.1 455 53.4
PSO832G2674 Papaver somniferum HOM05D004364 ORTHO05D006299 1.1e-124 451.1 397 57.9
TWI39G0400 Tripterygium wilfordii HOM05D004364 ORTHO05D006299 1.1e-124 451.1 390 58.7
PSO210G4872 Papaver somniferum HOM05D004364 ORTHO05D006299 1.8e-124 450.3 397 57.7
Gohir.D08G031200 Gossypium hirsutum HOM05D004364 ORTHO05D006299 2.4e-124 449.9 419 56.6
Thhalv10020069m.g Eutrema salsugineum HOM05D004364 ORTHO05D006299 3.1e-124 449.5 419 57.5
Sp3g18670 Schrenkiella parvula HOM05D004364 ORTHO05D006299 4.1e-124 449.1 461 53.1
GSVIVG01014465001 Vitis vinifera HOM05D004364 ORTHO05D006299 4.1e-124 449.1 404 57.2
Cc05_g12790 Coffea canephora HOM05D004364 ORTHO05D006299 5.3e-124 448.7 375 60.0
Prupe.4G192200 Prunus persica HOM05D004364 ORTHO05D006299 5.3e-124 448.7 418 55.5
Sc16g0006700 Simmondsia chinensis HOM05D004364 ORTHO05D006299 5.3e-124 448.7 472 51.1
Atru.chr2.2938 Acer truncatum HOM05D004364 ORTHO05D006299 6.9e-124 448.4 419 56.6
Gohir.A08G020600 Gossypium hirsutum HOM05D004364 ORTHO05D006299 6.9e-124 448.4 419 56.3
FvH4_3g21160 Fragaria vesca HOM05D004364 ORTHO05D006299 9.0e-124 448.0 471 51.2
BcaC01g03545 Brassica carinata HOM05D004364 ORTHO05D006299 1.2e-123 447.6 417 56.6
C03p51230 Brassica napus HOM05D004364 ORTHO05D006299 1.2e-123 447.6 417 56.6
BraA05t21700Z Brassica rapa HOM05D004364 ORTHO05D006299 1.2e-123 447.6 368 62.0
C05p43630 Brassica napus HOM05D004364 ORTHO05D006299 2.6e-123 446.4 418 56.7
TPR.G32881 Trifolium pratense HOM05D004364 ORTHO05D006299 2.6e-123 446.4 418 55.5
arahy.Tifrunner.gnm1.ann1.19RIMK Arachis hypogaea HOM05D004364 ORTHO05D006299 3.4e-123 446.0 419 54.7
Ca_01795_v3 Cicer arietinum L. HOM05D004364 ORTHO05D006299 3.4e-123 446.0 470 51.5
BcaB04g19118 Brassica carinata HOM05D004364 ORTHO05D006299 4.5e-123 445.7 417 56.1
A05p28190 Brassica napus HOM05D004364 ORTHO05D006299 4.5e-123 445.7 417 56.1
BolC3t17413H Brassica oleracea HOM05D004364 ORTHO05D006299 4.5e-123 445.7 418 56.2
Gorai.004G028800 Gossypium raimondii HOM05D004364 ORTHO05D006299 4.5e-123 445.7 419 56.1
Ciclev10007478m.g Citrus clementina HOM05D004364 ORTHO05D006299 1.0e-122 444.5 408 57.8
Sabra11G0111700 Salix brachista HOM05D004364 ORTHO05D006299 1.0e-122 444.5 405 56.8
Potri.001G408800 Populus trichocarpa HOM05D004364 ORTHO05D006299 1.3e-122 444.1 404 56.9
QL08p017220 Quercus lobata HOM05D004364 ORTHO05D006299 1.3e-122 444.1 367 60.5
Thecc.07G069000 Theobroma cacao HOM05D004364 ORTHO05D006299 1.3e-122 444.1 419 54.9
HanXRQChr13g0407291 Helianthus annuus HOM05D004364 ORTHO05D006299 1.7e-122 443.7 417 56.1
CSS0001646 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 3.8e-122 442.6 372 59.9
ECA240G1374 Erigeron canadensis HOM05D004364 ORTHO05D006299 3.8e-122 442.6 404 56.4
Manes.03G117700 Manihot esculenta HOM05D004364 ORTHO05D006299 6.5e-122 441.8 371 59.8
Psat5g247520 Pisum sativum HOM05D004364 ORTHO05D006299 6.5e-122 441.8 407 56.0
MSTRG.12935 Avicennia marina HOM05D004364 ORTHO05D006299 1.1e-121 441.0 378 59.0
CSS0013066 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 1.4e-121 440.7 372 59.7
Potri.011G125800 Populus trichocarpa HOM05D004364 ORTHO05D006299 1.4e-121 440.7 405 56.8
arahy.Tifrunner.gnm1.ann1.B7TU6S Arachis hypogaea HOM05D004364 ORTHO05D006299 1.9e-121 440.3 372 59.4
Haze_09550 Corylus avellana HOM05D004364 ORTHO05D006299 1.9e-121 440.3 417 54.9
Sed0018829 Sechium edule HOM05D004364 ORTHO05D006299 1.9e-121 440.3 404 55.7
MELO3C018182.2 Cucumis melo HOM05D004364 ORTHO05D006299 2.5e-121 439.9 372 59.4
BolC5t33082H Brassica oleracea HOM05D004364 ORTHO05D006299 3.2e-121 439.5 419 55.6
Solyc07g063650.4 Solanum lycopersicum HOM05D004364 ORTHO05D006299 3.2e-121 439.5 404 55.7
HPP92_005995 Vanilla planifolia HOM05D004364 ORTHO05D006299 3.2e-121 439.5 418 54.8
Cfa020489 Carpinus fangiana HOM05D004364 ORTHO05D006299 4.2e-121 439.1 417 54.9
THA.LOC104816919 Tarenaya hassleriana HOM05D004364 ORTHO05D006299 4.2e-121 439.1 367 61.0
FAN11G0387 Fragaria x ananassa HOM05D004364 ORTHO05D006299 5.5e-121 438.7 475 50.3
FAN16G3737 Fragaria x ananassa HOM05D004364 ORTHO05D006299 5.5e-121 438.7 475 50.5
Ah.04g165340 Amaranthus hybridus HOM05D004364 ORTHO05D006299 7.2e-121 438.3 373 59.0
BcaB06g26128 Brassica carinata HOM05D004364 ORTHO05D006299 7.2e-121 438.3 418 55.5
Eucgr.F01066 Eucalyptus grandis HOM05D004364 ORTHO05D006299 7.2e-121 438.3 469 51.8
Sopen07g031830 Solanum pennellii HOM05D004364 ORTHO05D006299 7.2e-121 438.3 404 55.4
AL3G34510 Arabidopsis lyrata HOM05D004364 ORTHO05D006299 1.2e-120 437.6 419 55.8
FAN25G2975 Fragaria x ananassa HOM05D004364 ORTHO05D006299 1.6e-120 437.2 475 50.3
HanXRQChr03g0076071 Helianthus annuus HOM05D004364 ORTHO05D006299 2.1e-120 436.8 404 55.9
Lj8C162G4 Lonicera japonica HOM05D004364 ORTHO05D006299 2.7e-120 436.4 404 54.7
Phvul.011G156100 Phaseolus vulgaris HOM05D004364 ORTHO05D006299 2.7e-120 436.4 469 50.1
CiPaw.11G178500 Carya illinoinensis HOM05D004364 ORTHO05D006299 3.5e-120 436.0 417 54.9
RcHm_v2.0_Chr5g0036241 Rosa chinensis HOM05D004364 ORTHO05D006299 3.5e-120 436.0 417 54.2
Duzib170G0088 Durio zibethinus HOM05D004364 ORTHO05D006299 4.6e-120 435.6 419 54.9
AT3G20630 Arabidopsis thaliana HOM05D004364 ORTHO05D006299 6.1e-120 435.3 419 55.8
AUR62029293 Chenopodium quinoa HOM05D004364 ORTHO05D006299 6.1e-120 435.3 413 53.8
Lj3g0027191 Lotus japonicus HOM05D004364 ORTHO05D006299 6.1e-120 435.3 405 54.8
Aqoxy1G03944 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 7.9e-120 434.9 441 53.1
BcaC05g28303 Brassica carinata HOM05D004364 ORTHO05D006299 7.9e-120 434.9 418 55.7
AUR62041167 Chenopodium quinoa HOM05D004364 ORTHO05D006299 7.9e-120 434.9 413 53.8
CsaV3_3G044300 Cucumis sativus L. HOM05D004364 ORTHO05D006299 7.9e-120 434.9 372 59.1
Peaxi162Scf01216g00070 Petunia axillaris HOM05D004364 ORTHO05D006299 7.9e-120 434.9 370 59.5
Glyma.12G146600 Glycine max HOM05D004364 ORTHO05D006299 1.0e-119 434.5 405 55.1
CAN.G162.111 Capsicum annuum HOM05D004364 ORTHO05D006299 2.3e-119 433.3 417 53.7
Cpa.g.sc12.20 Carica papaya HOM05D004364 ORTHO05D006299 3.9e-119 432.6 424 54.0
EL10Ac4g08041 Beta vulgaris HOM05D004364 ORTHO05D006299 5.1e-119 432.2 370 58.6
DCAR_008692 Daucus carota HOM05D004364 ORTHO05D006299 8.7e-119 431.4 407 55.3
Zm00001eb336890 Zea mays HOM05D004364 ORTHO05D006299 3.3e-118 429.5 404 55.0
Aa31LG8G7430 Aethionema arabicum HOM05D004364 ORTHO05D006299 4.3e-118 429.1 418 54.8
Nitab4.5_0001386g0060 Nicotiana tabacum HOM05D004364 ORTHO05D006299 1.3e-117 427.6 411 54.0
Carub.0003s2061 Capsella rubella HOM05D004364 ORTHO05D006299 6.3e-117 425.2 407 56.3
ATR1132G023 Amborella trichopoda HOM05D004364 ORTHO05D006299 1.1e-116 424.5 452 51.3
Os01g0177200 Oryza sativa ssp. japonica HOM05D004364 ORTHO05D006299 1.1e-116 424.5 408 53.9
Nitab4.5_0000092g0270 Nicotiana tabacum HOM05D004364 ORTHO05D006299 2.4e-116 423.3 411 54.3
Dinv22351 Davidia involucrata HOM05D004364 ORTHO05D006299 3.1e-116 422.9 367 58.9
CARHR096430 Cardamine hirsuta HOM05D004364 ORTHO05D006299 5.3e-116 422.2 461 51.4
Glyma.06G255000 Glycine max HOM05D004364 ORTHO05D006299 6.9e-116 421.8 405 53.6
Aqoxy5G02435 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 4.5e-115 419.1 404 55.2
CDE01G0428 Ceratophyllum demersum HOM05D004364 ORTHO05D006299 1.3e-114 417.5 409 54.8
SGA_v2.0_scaffold9G04963 Striga asiatica HOM05D004364 ORTHO05D006299 8.5e-114 414.8 417 53.0
Hma1.2p1_0015F.1_g010280 Hydrangea macrophylla HOM05D004364 ORTHO05D006299 7.2e-113 411.8 471 48.4
ClCG11G018570 Citrullus lanatus HOM05D004364 ORTHO05D006299 2.3e-111 406.8 449 49.9
COL.COLO4_09498 Corchorus olitorius HOM05D004364 ORTHO05D006299 4.3e-110 402.5 416 52.2
FAN21G1304 Fragaria x ananassa HOM05D004364 ORTHO05D006299 2.2e-109 400.2 471 46.9
Hund02178 Selenicereus undatus HOM05D004364 ORTHO05D006299 3.1e-108 396.4 473 46.5
Lsat_1_v5_gn_0_5341 Lactuca sativa HOM05D004364 ORTHO05D006299 5.1e-103 379.0 404 51.5
RhsimUnG0257500 Rhododendron simsii HOM05D004364 ORTHO05D006299 8.8e-103 378.3 435 48.7
vmacro09573 Vaccinium macrocarpon HOM05D004364 ORTHO05D006299 7.4e-102 375.2 558 41.0
unitig_21.g20140 Utricularia gibba HOM05D004364 ORTHO05D006299 1.5e-97 360.9 403 48.6
PRCOL_00003961 Prasinoderma coloniale HOM05D004364 ORTHO05D006299 2.7e-91 340.1 388 47.7
Manes.15G081800 Manihot esculenta HOM05D004364 ORTHO05D006299 1.2e-80 304.7 447 42.1
Haze_26164 Corylus avellana HOM05D004364 ORTHO05D006299 4.0e-79 299.7 438 40.6
MCO15G328 Micromonas commoda HOM05D004364 ORTHO05D006299 4.9e-77 292.7 430 40.0
Nitab4.5_0000297g0190 Nicotiana tabacum HOM05D004364 ORTHO05D006299 2.1e-72 277.3 404 41.3
Cre02.g080350 Chlamydomonas reinhardtii HOM05D004364 ORTHO05D006299 1.7e-69 267.7 440 38.0
TAR624G0100 Trochodendron aralioides HOM05D004364 ORTHO05D006299 5.0e-66 256.1 419 40.8
VMungo1127G0244 Vigna mungo HOM05D004364 ORTHO05D006299 2.4e-60 237.3 183 62.3
Lj1g0005584 Lotus japonicus HOM05D004364 ORTHO05D006299 3.5e-43 180.3 296 39.5
Sed0014921 Sechium edule HOM05D004364 ORTHO05D006299 1.1e-25 122.1 147 46.3
DCAR_027147 Daucus carota HOM05D004364 ORTHO05D006299 4.8e-24 116.7 97 57.7
MD15G1178100 Malus domestica HOM05D004364 ORTHO05D246722 5.3e-23 113.2 181 38.7
Lj1g0002875 Lotus japonicus HOM05D004364 ORTHO05D236196 1.3e-21 108.6 269 32.7
Sabra16G0271600 Salix brachista HOM05D004364 ORTHO05D006299 1.5e-17 95.1 69 62.3
SHI10079 Sapria himalayana HOM05D004364 ORTHO05D006299 7.4e-17 92.8 117 47.0
BcaB06g28879 Brassica carinata HOM05D001091 ORTHO05D001020 3.5e-11 73.9 289 24.9
PGR044G0522 Punica granatum HOM05D000344 ORTHO05D003478 1.0e-10 72.4 309 23.3
Glyma.14G109000 Glycine max HOM05D000344 ORTHO05D003478 6.7e-10 69.7 309 24.3
Lalb_Chr24g0401911 Lupinus albus HOM05D000344 ORTHO05D003478 6.7e-10 69.7 310 23.5
Pp3c21_16740 Physcomitrium patens HOM05D004364 ORTHO05D006299 1.5e-09 68.6 67 50.7
Sed0011564 Sechium edule HOM05D000344 ORTHO05D003478 2.5e-09 67.8 368 22.0
VMungo0647G2284 Vigna mungo HOM05D000344 ORTHO05D003478 4.3e-09 67.0 312 23.4
Glyma.17G218300 Glycine max HOM05D000344 ORTHO05D003478 7.4e-09 66.2 312 22.8
Nitab4.5_0000704g0050 Nicotiana tabacum HOM05D000344 ORTHO05D003478 1.6e-08 65.1 313 22.4
Sopen07g003630 Solanum pennellii HOM05D000344 ORTHO05D003478 1.6e-08 65.1 325 21.8
Ca_13058_v3 Cicer arietinum L. HOM05D000344 ORTHO05D003478 2.1e-08 64.7 308 23.4
Peaxi162Scf00088g01025 Petunia axillaris HOM05D000344 ORTHO05D003478 2.8e-08 64.3 343 21.6
CBR_g21302 Chara braunii HOM05D002714 ORTHO05D020415 4.8e-08 63.5 297 25.9
Manes.16G131400 Manihot esculenta HOM05D000344 ORTHO05D003478 4.8e-08 63.5 297 23.2
GSVIVG01015716001 Vitis vinifera HOM05D004364 ORTHO05D439286 4.8e-08 63.5 51 62.7
Lj5g0010119 Lotus japonicus HOM05D000344 ORTHO05D003478 6.3e-08 63.2 313 22.4
Nitab4.5_0002267g0010 Nicotiana tabacum HOM05D000344 ORTHO05D003478 8.2e-08 62.8 299 23.1
GSVIVG01035988001 Vitis vinifera HOM05D000344 ORTHO05D003478 8.2e-08 62.8 366 21.0
TWI34G0931 Tripterygium wilfordii HOM05D000344 ORTHO05D003478 2.4e-07 61.2 317 22.7
GSVIVG01014463001 Vitis vinifera HOM05D004364 ORTHO05D441130 2.4e-07 61.2 63 50.8
GSVIVG01015715001 Vitis vinifera HOM05D004364 ORTHO05D019261 2.4e-07 61.2 73 43.8
CAN.G1382.5 Capsicum annuum HOM05D000344 ORTHO05D003478 3.1e-07 60.8 298 21.5
Medtr4g115880 Medicago truncatula HOM05D000344 ORTHO05D003478 4.1e-07 60.5 311 23.2
Medtr4g077475 Medicago truncatula HOM05D004364 ORTHO05D006299 1.2e-06 58.9 73 43.8
arahy.Tifrunner.gnm1.ann1.CZGD0C Arachis hypogaea HOM05D004364 ORTHO05D006299 1.5e-06 58.5 41 61.0
Psat4g035800 Pisum sativum HOM05D000344 ORTHO05D003478 2.6e-06 57.8 308 22.1
Lsat_1_v5_gn_5_48621 Lactuca sativa HOM05D002714 ORTHO05D003085 3.4e-06 57.4 303 23.4
Ciclev10025895m.g Citrus clementina HOM05D002714 ORTHO05D003085 4.5e-06 57.0 309 26.2
CiPaw.03G142600 Carya illinoinensis HOM05D002714 ORTHO05D003085 5.9e-06 56.6 306 26.1
MELO3C009559.2 Cucumis melo HOM05D001091 ORTHO05D001020 5.9e-06 56.6 126 31.0
CsaV3_3G038160 Cucumis sativus L. HOM05D001091 ORTHO05D001020 5.9e-06 56.6 126 31.0
GSVIVG01014462001 Vitis vinifera HOM05D004364 ORTHO05D019261 5.9e-06 56.6 69 42.0
TWI63G0430 Tripterygium wilfordii HOM05D000344 ORTHO05D003478 7.6e-06 56.2 310 20.3


User provided reference genes

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