Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g12755 Chara braunii HOM05D003208 ORTHO05D004103 5.9e-94 347.4 166 100.0
Mapoly0022s0008 Marchantia polymorpha HOM05D003208 ORTHO05D004103 1.5e-44 183.3 157 56.7
Pp3c15_5210 Physcomitrium patens HOM05D003208 ORTHO05D004103 1.6e-43 179.9 157 58.0
SMO165G0121 Selaginella moellendorffii HOM05D003208 ORTHO05D004103 1.1e-42 177.2 155 57.4
Aqoxy6G00734 Aquilegia oxysepala HOM05D003208 ORTHO05D004103 1.4e-34 150.2 159 48.4
Nn5g30027 Nelumbo nucifera HOM05D003208 ORTHO05D004103 1.4e-34 150.2 150 52.7
Ciclev10024895m.g Citrus clementina HOM05D003208 ORTHO05D004103 9.0e-34 147.5 151 51.0
RcHm_v2.0_Chr2g0112501 Rosa chinensis HOM05D003208 ORTHO05D004103 9.0e-34 147.5 150 52.0
AagrBONN_evm.TU.Sc2ySwM_368.2854 Anthoceros agrestis HOM05D003208 ORTHO05D004103 1.5e-33 146.7 163 49.7
Potri.007G096100 Populus trichocarpa HOM05D003208 ORTHO05D004103 1.5e-33 146.7 148 50.7
TAR628G1304 Trochodendron aralioides HOM05D003208 ORTHO05D004103 2.0e-33 146.4 143 53.1
ATR0684G089 Amborella trichopoda HOM05D003208 ORTHO05D004103 3.4e-33 145.6 150 50.7
Sed0002614 Sechium edule HOM05D003208 ORTHO05D004103 5.8e-33 144.8 151 50.3
Rhsim10G0166900 Rhododendron simsii HOM05D003208 ORTHO05D004103 7.6e-33 144.4 150 50.7
ClCG01G018610 Citrullus lanatus HOM05D003208 ORTHO05D004103 1.0e-32 144.1 156 48.1
Medtr8g089980 Medicago truncatula HOM05D003208 ORTHO05D004103 1.0e-32 144.1 153 51.6
TPR.G6241 Trifolium pratense HOM05D003208 ORTHO05D004103 2.2e-32 142.9 156 50.6
Atru.chr3.1361 Acer truncatum HOM05D003208 ORTHO05D004103 3.8e-32 142.1 146 48.6
CDE10G0727 Ceratophyllum demersum HOM05D003208 ORTHO05D004103 3.8e-32 142.1 145 49.7
Lalb_Chr13g0295911 Lupinus albus HOM05D003208 ORTHO05D004103 3.8e-32 142.1 144 48.6
Gohir.D03G039900 Gossypium hirsutum HOM05D003208 ORTHO05D004103 4.9e-32 141.7 146 49.3
Gorai.003G041000 Gossypium raimondii HOM05D003208 ORTHO05D004103 6.5e-32 141.4 146 48.6
FvH4_1g20370 Fragaria vesca HOM05D003208 ORTHO05D004103 8.4e-32 141.0 150 50.7
FAN26G2141 Fragaria x ananassa HOM05D003208 ORTHO05D004103 8.4e-32 141.0 150 50.7
GSVIVG01003416001 Vitis vinifera HOM05D003208 ORTHO05D004103 1.1e-31 140.6 150 49.3
Duzib147G1622 Durio zibethinus HOM05D003208 ORTHO05D004103 1.4e-31 140.2 146 47.3
COL.COLO4_27282 Corchorus olitorius HOM05D003208 ORTHO05D004103 1.9e-31 139.8 152 46.1
FAN23G1395 Fragaria x ananassa HOM05D003208 ORTHO05D004103 1.9e-31 139.8 150 50.7
Gohir.A02G129100 Gossypium hirsutum HOM05D003208 ORTHO05D004103 1.9e-31 139.8 146 47.3
MD01G1034300 Malus domestica HOM05D003208 ORTHO05D004103 2.5e-31 139.4 150 50.0
Os09g0471900 Oryza sativa ssp. japonica HOM05D003208 ORTHO05D004103 2.5e-31 139.4 150 50.7
FAN28G0091 Fragaria x ananassa HOM05D003208 ORTHO05D004103 3.2e-31 139.0 150 50.0
CiPaw.03G144800 Carya illinoinensis HOM05D003208 ORTHO05D004103 4.2e-31 138.7 152 50.0
Zm00001eb315780 Zea mays HOM05D003208 ORTHO05D004103 4.2e-31 138.7 145 51.7
MELO3C007741.2 Cucumis melo HOM05D003208 ORTHO05D004103 7.1e-31 137.9 154 47.4
CsaV3_6G045280 Cucumis sativus L. HOM05D003208 ORTHO05D004103 7.1e-31 137.9 152 48.7
SGA_v2.0_scaffold111G31500 Striga asiatica HOM05D003208 ORTHO05D004103 9.3e-31 137.5 152 48.7
Thecc.01G096900 Theobroma cacao HOM05D003208 ORTHO05D004103 9.3e-31 137.5 146 45.9
MCO16G190 Micromonas commoda HOM05D003208 ORTHO05D004103 1.2e-30 137.1 150 46.7
TWI74G0107 Tripterygium wilfordii HOM05D003208 ORTHO05D004103 1.2e-30 137.1 151 47.0
arahy.Tifrunner.gnm1.ann1.56KYQ9 Arachis hypogaea HOM05D003208 ORTHO05D004103 1.6e-30 136.7 159 47.8
Actinidia19997 Actinidia chinensis HOM05D003208 ORTHO05D004103 2.1e-30 136.3 153 49.0
Cfa002613 Carpinus fangiana HOM05D003208 ORTHO05D004103 2.1e-30 136.3 153 48.4
Prupe.6G191700 Prunus persica HOM05D003208 ORTHO05D004103 2.1e-30 136.3 150 50.0
arahy.Tifrunner.gnm1.ann1.G6ARYH Arachis hypogaea HOM05D003208 ORTHO05D004103 3.5e-30 135.6 159 47.2
Lalb_Chr07g0185301 Lupinus albus HOM05D003208 ORTHO05D004103 3.5e-30 135.6 144 48.6
Sed0018597 Sechium edule HOM05D003208 ORTHO05D004103 3.5e-30 135.6 155 48.4
DCAR_003477 Daucus carota HOM05D003208 ORTHO05D004103 4.6e-30 135.2 148 46.6
Lj4g0011115 Lotus japonicus HOM05D003208 ORTHO05D004103 4.6e-30 135.2 150 46.7
MSTRG.2578 Avicennia marina HOM05D003208 ORTHO05D004103 6.0e-30 134.8 152 47.4
Cpa.g.sc55.83 Carica papaya HOM05D003208 ORTHO05D004103 6.0e-30 134.8 150 45.3
Ca_17757_v3 Cicer arietinum L. HOM05D003208 ORTHO05D004103 6.0e-30 134.8 145 46.2
PSO675G0282 Papaver somniferum HOM05D003208 ORTHO05D004103 6.0e-30 134.8 154 49.4
Psat7g057040 Pisum sativum HOM05D003208 ORTHO05D004103 6.0e-30 134.8 150 48.0
Dinv13221 Davidia involucrata HOM05D003208 ORTHO05D004103 7.9e-30 134.4 157 45.9
PSO541G6125 Papaver somniferum HOM05D003208 ORTHO05D004103 7.9e-30 134.4 154 49.4
Glyma.08G133700 Glycine max HOM05D003208 ORTHO05D004103 1.0e-29 134.0 152 47.4
PGR102G0950 Punica granatum HOM05D003208 ORTHO05D004103 1.8e-29 133.3 143 46.2
Sabra07G0079200 Salix brachista HOM05D003208 ORTHO05D004103 1.8e-29 133.3 179 43.0
VMungo1383G1326 Vigna mungo HOM05D003208 ORTHO05D004103 1.8e-29 133.3 150 46.0
QL06p048297 Quercus lobata HOM05D003208 ORTHO05D004103 3.0e-29 132.5 143 46.9
AT2G22400 Arabidopsis thaliana HOM05D003208 ORTHO05D004103 3.9e-29 132.1 148 44.6
CANSAT01G1547 Cannabis sativa HOM05D003208 ORTHO05D004103 5.1e-29 131.7 149 47.0
CARHR113590 Cardamine hirsuta HOM05D003208 ORTHO05D004103 5.1e-29 131.7 150 44.7
Glyma.11G241400 Glycine max HOM05D003208 ORTHO05D004103 5.1e-29 131.7 156 44.9
Migut.H02342 Erythranthe guttata HOM05D003208 ORTHO05D004103 8.7e-29 131.0 150 46.0
Hma1.2p1_0019F.1_g013690 Hydrangea macrophylla HOM05D003208 ORTHO05D004103 8.7e-29 131.0 151 47.0
THA.LOC104807678 Tarenaya hassleriana HOM05D003208 ORTHO05D004103 8.7e-29 131.0 154 43.5
PGSC0003DMG400016157 Solanum tuberosum HOM05D003208 ORTHO05D004103 1.1e-28 130.6 163 46.6
HPP92_013098 Vanilla planifolia HOM05D003208 ORTHO05D004103 1.1e-28 130.6 159 47.2
VMungo0251G3398 Vigna mungo HOM05D003208 ORTHO05D004103 1.1e-28 130.6 152 48.0
AL4G11900 Arabidopsis lyrata HOM05D003208 ORTHO05D004103 1.5e-28 130.2 149 45.0
Eucgr.H04746 Eucalyptus grandis HOM05D003208 ORTHO05D004103 1.5e-28 130.2 158 46.8
Nitab4.5_0000128g0250 Nicotiana tabacum HOM05D003208 ORTHO05D004103 1.5e-28 130.2 156 44.9
Carub.0004s0156 Capsella rubella HOM05D003208 ORTHO05D004103 1.9e-28 129.8 148 44.6
Phvul.002G261300 Phaseolus vulgaris HOM05D003208 ORTHO05D004103 3.3e-28 129.0 152 47.4
Aa31LG7G14430 Aethionema arabicum HOM05D003208 ORTHO05D004103 4.3e-28 128.6 152 46.1
BcaC02g08664 Brassica carinata HOM05D003208 ORTHO05D004103 7.4e-28 127.9 154 43.5
CAN.G905.28 Capsicum annuum HOM05D003208 ORTHO05D004103 7.4e-28 127.9 163 44.8
Nitab4.5_0012684g0010 Nicotiana tabacum HOM05D003208 ORTHO05D004103 7.4e-28 127.9 160 42.5
Solyc11g010110.3 Solanum lycopersicum HOM05D003208 ORTHO05D004103 7.4e-28 127.9 153 45.8
TWI77G0296 Tripterygium wilfordii HOM05D003208 ORTHO05D004103 7.4e-28 127.9 153 44.4
BcaC07g41076 Brassica carinata HOM05D003208 ORTHO05D004103 9.6e-28 127.5 152 44.7
A09p57600 Brassica napus HOM05D003208 ORTHO05D004103 9.6e-28 127.5 152 44.7
BolC8t51644H Brassica oleracea HOM05D003208 ORTHO05D004103 9.6e-28 127.5 152 44.7
BraA09t41152Z Brassica rapa HOM05D003208 ORTHO05D004103 9.6e-28 127.5 152 44.7
Psat5g090760 Pisum sativum HOM05D003208 ORTHO05D004103 9.6e-28 127.5 148 46.6
BolC4t26736H Brassica oleracea HOM05D003208 ORTHO05D004103 1.3e-27 127.1 154 42.9
Glyma.05G176167 Glycine max HOM05D003208 ORTHO05D004103 1.3e-27 127.1 152 46.7
C08p40800 Brassica napus HOM05D003208 ORTHO05D004103 1.6e-27 126.7 152 44.1
BcaB08g35063 Brassica carinata HOM05D003208 ORTHO05D004103 2.8e-27 125.9 152 44.1
BcaC02g08709 Brassica carinata HOM05D003208 ORTHO05D004103 2.8e-27 125.9 154 43.5
C04p51440 Brassica napus HOM05D003208 ORTHO05D004103 2.8e-27 125.9 154 43.5
Cre03.g179860 Chlamydomonas reinhardtii HOM05D003208 ORTHO05D004103 4.8e-27 125.2 100 58.0
Medtr3g086950 Medicago truncatula HOM05D003208 ORTHO05D004103 8.2e-27 124.4 149 49.0
A04p16880 Brassica napus HOM05D003208 ORTHO05D004103 1.1e-26 124.0 154 42.9
BraA04t17321Z Brassica rapa HOM05D003208 ORTHO05D004103 1.1e-26 124.0 154 42.9
Oeu056635.1 Olea europaea HOM05D003208 ORTHO05D004103 1.1e-26 124.0 159 44.7
Thhalv10000050m.g Eutrema salsugineum HOM05D003208 ORTHO05D004103 1.4e-26 123.6 150 45.3
Cc07_g14750 Coffea canephora HOM05D003208 ORTHO05D004103 2.4e-26 122.9 160 45.0
Ca_16514_v3 Cicer arietinum L. HOM05D003208 ORTHO05D004103 3.1e-26 122.5 148 45.3
Phvul.001G253400 Phaseolus vulgaris HOM05D003208 ORTHO05D004103 4.0e-26 122.1 148 43.2
Sp4g01430 Schrenkiella parvula HOM05D003208 ORTHO05D004103 6.9e-26 121.3 153 43.8
Ah.02g126130 Amaranthus hybridus HOM05D003208 ORTHO05D004103 9.0e-26 120.9 158 41.8
Lsat_1_v5_gn_5_45360 Lactuca sativa HOM05D003208 ORTHO05D004103 1.2e-25 120.6 158 42.4
HanXRQChr07g0196311 Helianthus annuus HOM05D003208 ORTHO05D004103 1.5e-25 120.2 150 44.0
Sc03g0000100 Simmondsia chinensis HOM05D003208 ORTHO05D004103 1.5e-25 120.2 158 43.0
MD15G1321500 Malus domestica HOM05D003208 ORTHO05D004103 5.8e-25 118.2 152 45.4
CAN.G151.12 Capsicum annuum HOM05D003208 ORTHO05D004103 7.6e-25 117.9 155 47.1
Lalb_Chr23g0277531 Lupinus albus HOM05D003208 ORTHO05D004103 1.7e-24 116.7 142 44.4
AUR62027218 Chenopodium quinoa HOM05D003208 ORTHO05D004103 2.2e-24 116.3 162 40.1
Os08g0484400 Oryza sativa ssp. japonica HOM05D003208 ORTHO05D004103 2.9e-24 115.9 149 45.0
SalBow3G0841 Salvia bowleyana HOM05D003208 ORTHO05D004103 3.8e-24 115.5 156 42.3
SalBow3G1582 Salvia bowleyana HOM05D003208 ORTHO05D004103 3.8e-24 115.5 156 42.3
TPR.G15995 Trifolium pratense HOM05D003208 ORTHO05D004103 3.8e-24 115.5 112 50.0
vmacro12976 Vaccinium macrocarpon HOM05D003208 ORTHO05D004103 6.5e-24 114.8 200 37.5
Sopen05g029940 Solanum pennellii HOM05D003208 ORTHO05D004103 3.2e-23 112.5 160 42.5
Solyc05g051520.3 Solanum lycopersicum HOM05D003208 ORTHO05D004103 4.2e-23 112.1 159 42.8
Nitab4.5_0000241g0270 Nicotiana tabacum HOM05D003208 ORTHO05D004103 9.3e-23 110.9 176 40.3
ECA246G0394 Erigeron canadensis HOM05D003208 ORTHO05D004103 1.6e-22 110.2 152 41.4
AL7G12310 Arabidopsis lyrata HOM05D003208 ORTHO05D004103 2.7e-22 109.4 139 39.6
Actinidia06543 Actinidia chinensis HOM05D003208 ORTHO05D004103 3.5e-22 109.0 102 52.9
Thhalv10024482m.g Eutrema salsugineum HOM05D003208 ORTHO05D004103 4.6e-22 108.6 152 42.1
CARHR246680 Cardamine hirsuta HOM05D003208 ORTHO05D004103 1.0e-21 107.5 99 48.5
Lj6g0024442 Lotus japonicus HOM05D003208 ORTHO05D004103 1.8e-21 106.7 96 50.0
Sp7g35870 Schrenkiella parvula HOM05D003208 ORTHO05D004103 1.8e-21 106.7 152 40.8
BcaNung00929 Brassica carinata HOM05D003208 ORTHO05D004103 3.9e-21 105.5 122 41.0
Nitab4.5_0002604g0040 Nicotiana tabacum HOM05D003208 ORTHO05D004103 5.1e-21 105.1 158 42.4
C01p01050 Brassica napus HOM05D003208 ORTHO05D004103 6.7e-21 104.8 122 41.8
BolC1t00102H Brassica oleracea HOM05D003208 ORTHO05D004103 6.7e-21 104.8 122 41.8
Thhalv10000064m.g Eutrema salsugineum HOM05D003208 ORTHO05D004103 8.7e-21 104.4 150 41.3
Carub.0007s0196 Capsella rubella HOM05D003208 ORTHO05D004103 1.5e-20 103.6 152 38.8
BcaNung05188 Brassica carinata HOM05D003208 ORTHO05D004103 2.5e-20 102.8 149 39.6
Aa31LG6G15240 Aethionema arabicum HOM05D003208 ORTHO05D004103 1.3e-19 100.5 141 38.3
AUR62003252 Chenopodium quinoa HOM05D003208 ORTHO05D004103 2.2e-19 99.8 160 37.5
AT4G40000 Arabidopsis thaliana HOM05D003208 ORTHO05D004103 2.8e-19 99.4 98 45.9
A01p00920 Brassica napus HOM05D003208 ORTHO05D004103 4.8e-19 98.6 150 38.7
BraA01t00090Z Brassica rapa HOM05D003208 ORTHO05D004103 4.8e-19 98.6 150 38.7
EL10Ac6g14824 Beta vulgaris HOM05D003208 ORTHO05D004103 1.1e-18 97.4 141 39.7
PGR004G2195 Punica granatum HOM05D003208 ORTHO05D004103 6.9e-18 94.7 157 38.2
PRCOL_00004940 Prasinoderma coloniale HOM05D003208 ORTHO05D004103 2.6e-17 92.8 174 36.8
HPP92_013110 Vanilla planifolia HOM05D003208 ORTHO05D004103 4.5e-17 92.0 127 43.3
MCO11G029 Micromonas commoda HOM05D003208 ORTHO05D004103 2.5e-15 86.3 96 39.6
Lj2C541T5 Lonicera japonica HOM05D003208 ORTHO05D004103 9.4e-15 84.3 91 46.2
Haze_24867 Corylus avellana HOM05D003208 ORTHO05D004103 2.7e-14 82.8 92 46.7
SEGI_04873 Sequoiadendron giganteum HOM05D003208 ORTHO05D004103 7.9e-14 81.3 90 47.8
PSO675G6953 Papaver somniferum HOM05D003208 ORTHO05D004103 1.5e-12 77.0 95 46.3
Pp3c15_5220 Physcomitrium patens HOM05D003208 ORTHO05D004103 1.5e-12 77.0 50 66.0
Peaxi162Scf00044g00112 Petunia axillaris HOM05D003208 ORTHO05D004103 7.4e-12 74.7 80 47.5
Zm00001eb033550 Zea mays HOM05D003208 ORTHO05D004103 3.4e-09 65.9 159 33.3
MCO12G374 Micromonas commoda HOM05D003208 ORTHO05D004103 5.9e-09 65.1 100 33.0
Peaxi162Scf00381g00061 Petunia axillaris HOM05D003208 ORTHO05D004103 1.7e-08 63.5 154 31.8
SHI01114 Sapria himalayana HOM05D003208 ORTHO05D004103 1.1e-07 60.8 160 33.8
PRCOL_00006481 Prasinoderma coloniale HOM05D003208 ORTHO05D004103 2.5e-07 59.7 86 39.5
unitig_699.g19581 Utricularia gibba HOM05D003208 ORTHO05D004103 7.2e-07 58.2 153 30.7


User provided reference genes

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