Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g11105 Chara braunii HOM05D003501 ORTHO05D004388 2.5e-212 741.9 378 100.0
Pp3c15_22440 Physcomitrium patens HOM05D003501 ORTHO05D004388 4.4e-145 518.5 377 67.6
Mapoly0187s0002 Marchantia polymorpha HOM05D003501 ORTHO05D004388 1.1e-143 513.8 383 66.6
SMO144G0146 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 3.9e-141 505.4 373 65.7
AagrBONN_evm.TU.Sc2ySwM_368.3338 Anthoceros agrestis HOM05D003501 ORTHO05D004388 7.8e-134 481.1 406 60.6
TAR481G0007 Trochodendron aralioides HOM05D003501 ORTHO05D004388 2.4e-130 469.5 377 61.5
Sc10g0003820 Simmondsia chinensis HOM05D003501 ORTHO05D004388 4.4e-129 465.3 374 61.2
MSTRG.12186 Avicennia marina HOM05D003501 ORTHO05D004388 1.7e-128 463.4 377 59.9
CSS0017931 Camellia sinensis var. sinensis HOM05D003501 ORTHO05D004388 2.9e-128 462.6 375 61.3
MD10G1234700 Malus domestica HOM05D003501 ORTHO05D004388 2.9e-128 462.6 378 61.4
Potri.009G016000 Populus trichocarpa HOM05D003501 ORTHO05D004388 2.9e-128 462.6 375 60.3
Hma1.2p1_0199F.1_g085800 Hydrangea macrophylla HOM05D003501 ORTHO05D004388 3.8e-128 462.2 377 60.2
Ah.11g044900 Amaranthus hybridus HOM05D003501 ORTHO05D004388 4.9e-128 461.8 374 61.0
Manes.04G047600 Manihot esculenta HOM05D003501 ORTHO05D004388 2.4e-127 459.5 378 59.5
Potri.001G216400 Populus trichocarpa HOM05D003501 ORTHO05D004388 2.4e-127 459.5 374 59.6
Lj2A610G28 Lonicera japonica HOM05D003501 ORTHO05D004388 5.4e-127 458.4 369 62.6
Rhsim08G0066100 Rhododendron simsii HOM05D003501 ORTHO05D004388 5.4e-127 458.4 375 60.3
Atru.chr9.1898 Acer truncatum HOM05D003501 ORTHO05D004388 7.1e-127 458.0 375 61.6
RcHm_v2.0_Chr5g0019871 Rosa chinensis HOM05D003501 ORTHO05D004388 7.1e-127 458.0 377 60.5
Hund15639 Selenicereus undatus HOM05D003501 ORTHO05D004388 2.1e-126 456.4 372 60.8
vmacro18212 Vaccinium macrocarpon HOM05D003501 ORTHO05D004388 2.1e-126 456.4 375 60.5
FvH4_3g12140 Fragaria vesca HOM05D003501 ORTHO05D004388 4.6e-126 455.3 377 59.7
FAN25G1502 Fragaria x ananassa HOM05D003501 ORTHO05D004388 4.6e-126 455.3 377 59.7
FAN16G1741 Fragaria x ananassa HOM05D003501 ORTHO05D004388 1.0e-125 454.1 375 59.7
SGA_v2.0_scaffold135G34778 Striga asiatica HOM05D003501 ORTHO05D004388 2.3e-125 453.0 374 59.9
FAN21G1855 Fragaria x ananassa HOM05D003501 ORTHO05D004388 3.0e-125 452.6 377 59.4
Prupe.4G110100 Prunus persica HOM05D003501 ORTHO05D004388 3.0e-125 452.6 378 59.3
EL10As4g23426 Beta vulgaris HOM05D003501 ORTHO05D004388 3.9e-125 452.2 374 60.4
TWI79G0225 Tripterygium wilfordii HOM05D003501 ORTHO05D004388 6.6e-125 451.4 376 59.0
Eucgr.B03813 Eucalyptus grandis HOM05D003501 ORTHO05D004388 1.9e-124 449.9 375 59.7
Dinv15534 Davidia involucrata HOM05D003501 ORTHO05D004388 2.5e-124 449.5 384 58.1
HPP92_001388 Vanilla planifolia HOM05D003501 ORTHO05D004388 9.6e-124 447.6 374 60.4
CiPaw.14G095200 Carya illinoinensis HOM05D003501 ORTHO05D004388 1.3e-123 447.2 375 58.4
HanXRQChr11g0321781 Helianthus annuus HOM05D003501 ORTHO05D004388 1.6e-123 446.8 378 58.7
Lsat_1_v5_gn_4_134160 Lactuca sativa HOM05D003501 ORTHO05D004388 1.6e-123 446.8 378 58.2
Aqoxy3G03267 Aquilegia oxysepala HOM05D003501 ORTHO05D004388 2.1e-123 446.4 378 57.9
Sopen02g018490 Solanum pennellii HOM05D003501 ORTHO05D004388 2.1e-123 446.4 378 58.5
PGR102G2752 Punica granatum HOM05D003501 ORTHO05D004388 2.8e-123 446.0 375 59.2
Solyc02g069340.4 Solanum lycopersicum HOM05D003501 ORTHO05D004388 2.8e-123 446.0 378 58.2
Ciclev10028663m.g Citrus clementina HOM05D003501 ORTHO05D004388 3.6e-123 445.7 377 59.4
MBI14_g02806_MAGBIO Magnolia biondii HOM05D003501 ORTHO05D004388 3.6e-123 445.7 374 59.4
MBI14_g41488_MAGBIO Magnolia biondii HOM05D003501 ORTHO05D004388 3.6e-123 445.7 374 59.4
PGSC0003DMG400021209 Solanum tuberosum HOM05D003501 ORTHO05D004388 3.6e-123 445.7 378 58.5
ECA232G0193 Erigeron canadensis HOM05D003501 ORTHO05D004388 4.8e-123 445.3 381 58.3
Actinidia38747 Actinidia chinensis HOM05D003501 ORTHO05D004388 6.2e-123 444.9 375 59.2
Cc07_g02990 Coffea canephora HOM05D003501 ORTHO05D004388 8.1e-123 444.5 378 58.5
Atru.chr3.3108 Acer truncatum HOM05D003501 ORTHO05D004388 1.1e-122 444.1 375 60.0
Cpa.g.sc56.89 Carica papaya HOM05D003501 ORTHO05D004388 1.4e-122 443.7 376 58.0
Cre09.g400367 Chlamydomonas reinhardtii HOM05D003501 ORTHO05D004388 1.8e-122 443.4 377 59.4
CiPaw.08G137600 Carya illinoinensis HOM05D003501 ORTHO05D004388 2.4e-122 443.0 375 57.6
Migut.H00888 Erythranthe guttata HOM05D003501 ORTHO05D004388 1.5e-121 440.3 374 58.3
Cfa010173 Carpinus fangiana HOM05D003501 ORTHO05D004388 2.0e-121 439.9 375 57.6
Haze_23560 Corylus avellana HOM05D003501 ORTHO05D004388 3.4e-121 439.1 375 57.6
PSO063G0318 Papaver somniferum HOM05D003501 ORTHO05D004388 3.4e-121 439.1 375 59.5
PSO170G5263 Papaver somniferum HOM05D003501 ORTHO05D004388 9.9e-121 437.6 375 59.2
GSVIVG01032606001 Vitis vinifera HOM05D003501 ORTHO05D004388 1.3e-120 437.2 374 58.6
PSO170G6031 Papaver somniferum HOM05D003501 ORTHO05D004388 2.2e-120 436.4 377 58.1
SHI25258 Sapria himalayana HOM05D003501 ORTHO05D004388 4.9e-120 435.3 369 59.6
Thecc.09G271900 Theobroma cacao HOM05D003501 ORTHO05D004388 4.9e-120 435.3 378 58.5
Gohir.A09G099800 Gossypium hirsutum HOM05D003501 ORTHO05D004388 1.4e-119 433.7 378 58.2
Duzib168G1975 Durio zibethinus HOM05D003501 ORTHO05D004388 3.2e-119 432.6 378 58.5
Gohir.D09G099200 Gossypium hirsutum HOM05D003501 ORTHO05D004388 4.2e-119 432.2 378 58.2
Gorai.006G116200 Gossypium raimondii HOM05D003501 ORTHO05D004388 4.2e-119 432.2 378 58.2
Zm00001eb316080 Zea mays HOM05D003501 ORTHO05D004388 4.2e-119 432.2 375 55.7
DCAR_025365 Daucus carota HOM05D003501 ORTHO05D004388 7.1e-119 431.4 375 59.2
SalBow1G3035 Salvia bowleyana HOM05D003501 ORTHO05D004388 7.1e-119 431.4 374 57.8
Actinidia26218 Actinidia chinensis HOM05D003501 ORTHO05D004388 2.7e-118 429.5 388 57.0
Nn8g40776 Nelumbo nucifera HOM05D003501 ORTHO05D004388 3.9e-117 425.6 361 59.0
Sed0017179 Sechium edule HOM05D003501 ORTHO05D004388 3.9e-117 425.6 372 56.7
CDE01G0277 Ceratophyllum demersum HOM05D003501 ORTHO05D004388 6.7e-117 424.9 377 57.3
Lalb_Chr09g0327341 Lupinus albus HOM05D003501 ORTHO05D004388 1.1e-116 424.1 379 54.6
Os03g0833700 Oryza sativa ssp. japonica HOM05D003501 ORTHO05D004388 2.5e-116 422.9 375 55.5
Peaxi162Scf00683g00345 Petunia axillaris HOM05D003501 ORTHO05D004388 4.3e-116 422.2 383 55.4
MELO3C015060.2 Cucumis melo HOM05D003501 ORTHO05D004388 7.4e-116 421.4 372 56.7
Aa31LG2G15030 Aethionema arabicum HOM05D003501 ORTHO05D004388 8.1e-115 417.9 378 55.6
arahy.Tifrunner.gnm1.ann1.57UCU4 Arachis hypogaea HOM05D003501 ORTHO05D004388 1.4e-114 417.2 376 55.6
AUR62029643 Chenopodium quinoa HOM05D003501 ORTHO05D004388 2.4e-114 416.4 362 56.9
VMungo0251G0431 Vigna mungo HOM05D003501 ORTHO05D004388 2.4e-114 416.4 374 55.1
arahy.Tifrunner.gnm1.ann1.FG3FW1 Arachis hypogaea HOM05D003501 ORTHO05D004388 3.1e-114 416.0 376 55.6
Thhalv10013826m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 9.0e-114 414.5 375 55.5
Carub.0006s1974 Capsella rubella HOM05D003501 ORTHO05D004388 1.2e-113 414.1 375 56.5
CsaV3_1G043830 Cucumis sativus L. HOM05D003501 ORTHO05D004388 1.2e-113 414.1 372 55.9
Lj2g0019396 Lotus japonicus HOM05D003501 ORTHO05D004388 1.5e-113 413.7 379 54.1
ClCG03G012190 Citrullus lanatus HOM05D003501 ORTHO05D004388 2.0e-113 413.3 372 56.7
VMungo0720G0165 Vigna mungo HOM05D003501 ORTHO05D004388 2.0e-113 413.3 376 54.8
Phvul.002G221600 Phaseolus vulgaris HOM05D003501 ORTHO05D004388 3.4e-113 412.5 376 54.3
THA.LOC104809596 Tarenaya hassleriana HOM05D003501 ORTHO05D004388 4.5e-113 412.1 381 54.3
AT5G22100 Arabidopsis thaliana HOM05D003501 ORTHO05D004388 7.6e-113 411.4 379 55.1
Glyma.13G179100 Glycine max HOM05D003501 ORTHO05D004388 1.7e-112 410.2 376 53.7
COL.COLO4_25421 Corchorus olitorius HOM05D003501 ORTHO05D004388 2.2e-112 409.8 357 57.1
TPR.G12888 Trifolium pratense HOM05D003501 ORTHO05D004388 3.8e-112 409.1 378 52.6
BolC8t47419H Brassica oleracea HOM05D003501 ORTHO05D004388 4.9e-112 408.7 375 54.4
BraA08t32548Z Brassica rapa HOM05D003501 ORTHO05D004388 6.4e-112 408.3 375 54.9
Lj2g0023176 Lotus japonicus HOM05D003501 ORTHO05D004388 1.4e-111 407.1 378 52.9
AUR62025912 Chenopodium quinoa HOM05D003501 ORTHO05D004388 3.2e-111 406.0 365 55.3
BcaC07g37193 Brassica carinata HOM05D003501 ORTHO05D004388 4.2e-111 405.6 375 54.1
AL6G33080 Arabidopsis lyrata HOM05D003501 ORTHO05D004388 7.1e-111 404.8 375 54.9
Sp6g23090 Schrenkiella parvula HOM05D003501 ORTHO05D004388 1.2e-110 404.1 378 52.9
BcaB04g17480 Brassica carinata HOM05D003501 ORTHO05D004388 3.5e-110 402.5 375 53.9
BcaB07g33815 Brassica carinata HOM05D003501 ORTHO05D004388 1.0e-109 401.0 375 52.5
A10p06220 Brassica napus HOM05D003501 ORTHO05D004388 2.3e-109 399.8 375 52.8
BcaC08g42972 Brassica carinata HOM05D003501 ORTHO05D004388 3.9e-109 399.1 376 53.2
C06p02140 Brassica napus HOM05D003501 ORTHO05D004388 3.9e-109 399.1 376 53.2
BolC6t35344H Brassica oleracea HOM05D003501 ORTHO05D004388 5.1e-109 398.7 375 52.5
BraA10t42890Z Brassica rapa HOM05D003501 ORTHO05D004388 5.1e-109 398.7 375 52.5
MD05G1254500 Malus domestica HOM05D003501 ORTHO05D004388 3.3e-108 396.0 391 54.0
Thhalv10028736m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 9.6e-108 394.4 378 52.9
Psat7g031640 Pisum sativum HOM05D003501 ORTHO05D004388 1.3e-107 394.0 376 52.1
Sabra16G0127400 Salix brachista HOM05D003501 ORTHO05D004388 2.1e-107 393.3 455 47.0
unitig_21.g20948 Utricularia gibba HOM05D003501 ORTHO05D004388 6.2e-107 391.7 377 54.4
A08p05420 Brassica napus HOM05D003501 ORTHO05D004388 1.1e-106 391.0 401 50.9
C08p05880 Brassica napus HOM05D003501 ORTHO05D004388 6.9e-106 388.3 406 50.0
Nitab4.5_0010866g0010 Nicotiana tabacum HOM05D003501 ORTHO05D004388 3.4e-105 386.0 378 51.3
Oeu018673.1 Olea europaea HOM05D003501 ORTHO05D004388 1.3e-104 384.0 404 50.7
EL10Ac6g13118 Beta vulgaris HOM05D003501 ORTHO05D004388 3.9e-101 372.5 376 50.0
Medtr8g098715 Medicago truncatula HOM05D003501 ORTHO05D004388 2.5e-100 369.8 405 47.7
PRCOL_00006339 Prasinoderma coloniale HOM05D003501 ORTHO05D004388 1.0e-96 357.8 375 52.3
Ca_12888_v3 Cicer arietinum L. HOM05D003501 ORTHO05D004388 2.2e-96 356.7 374 50.0
MCO16G220 Micromonas commoda HOM05D003501 ORTHO05D004388 1.4e-95 354.0 476 42.9
CSS0035358 Camellia sinensis var. sinensis HOM05D003501 ORTHO05D004388 2.7e-94 349.7 313 59.1
Glyma.01G143200 Glycine max HOM05D003501 ORTHO05D004388 1.8e-90 337.0 295 55.3
QL05p062772 Quercus lobata HOM05D003501 ORTHO05D004388 5.9e-89 332.0 309 54.4
SalBow1G0615 Salvia bowleyana HOM05D003501 ORTHO05D004388 3.2e-87 326.2 380 46.8
Thhalv10029476m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 1.8e-85 320.5 378 45.5
Prupe.6G111200 Prunus persica HOM05D003501 ORTHO05D004388 5.5e-79 298.9 383 43.6
Nitab4.5_0005797g0050 Nicotiana tabacum HOM05D003501 ORTHO05D004388 1.1e-74 284.6 259 54.1
Haze_27241 Corylus avellana HOM05D003501 ORTHO05D004388 9.1e-74 281.6 384 41.1
ATR0097G041 Amborella trichopoda HOM05D003501 ORTHO05D004388 1.2e-73 281.2 234 57.7
CAN.G953.11 Capsicum annuum HOM05D003501 ORTHO05D004388 3.2e-71 273.1 250 56.8
SalBow8G4485 Salvia bowleyana HOM05D003501 ORTHO05D004388 7.2e-71 271.9 378 41.5
SMO361G0623 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 4.8e-67 259.2 216 62.0
SHI03441 Sapria himalayana HOM05D003501 ORTHO05D004388 3.6e-62 243.0 252 52.0
EL10As8g23847 Beta vulgaris HOM05D003501 ORTHO05D004388 3.8e-56 223.0 197 54.8
PGSC0003DMG400006605 Solanum tuberosum HOM05D003501 ORTHO05D004388 2.8e-54 216.9 197 55.8
SMO364G0671 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 5.7e-52 209.1 181 58.6
SMO004G0007 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 3.5e-49 199.9 166 59.6
CARHR191430 Cardamine hirsuta HOM05D003501 ORTHO05D004388 2.5e-47 193.7 162 58.0
CARHR072400 Cardamine hirsuta HOM05D003501 ORTHO05D004388 6.1e-46 189.1 186 50.5
arahy.Tifrunner.gnm1.ann1.3N5Q80 Arachis hypogaea HOM05D003501 ORTHO05D004388 1.8e-45 187.6 258 41.9
Phvul.002G299004 Phaseolus vulgaris HOM05D003501 ORTHO05D004388 2.2e-43 180.6 160 53.1
Cfa022309 Carpinus fangiana HOM05D003501 ORTHO05D004388 8.3e-43 178.7 402 34.8
Prupe.6G112100 Prunus persica HOM05D003501 ORTHO05D004388 3.0e-40 170.2 375 32.0
SMO065G0004 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 8.6e-40 168.7 144 59.0
SMO330G0055 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 3.3e-39 166.8 144 58.3
SMO201G0018 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 7.3e-39 165.6 241 43.2
SMO112G0124 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 3.6e-38 163.3 192 49.5
HPP92_000027 Vanilla planifolia HOM05D003501 ORTHO05D004388 6.2e-38 162.5 127 64.6
Actinidia15653 Actinidia chinensis HOM05D003501 ORTHO05D004388 1.1e-37 161.8 143 58.0
ECA232G4075 Erigeron canadensis HOM05D003501 ORTHO05D004388 3.1e-37 160.2 206 44.7
SMO112G0083 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.5e-36 157.9 144 56.2
SMO112G0081 Selaginella moellendorffii HOM05D016263 ORTHO05D003616 1.0e-32 145.2 263 37.6
CAN.G953.12 Capsicum annuum HOM05D003501 ORTHO05D004388 5.6e-31 139.4 116 55.2
SMO163G0016 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 2.8e-30 137.1 112 62.5
SMO114G0139 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 4.7e-30 136.3 181 46.4
Lsat_1_v5_gn_2_70781 Lactuca sativa HOM05D003501 ORTHO05D004388 8.3e-27 125.6 121 50.4
HPP92_000050 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.0e-24 118.6 133 48.1
SMO353G0041 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.7e-24 117.9 262 33.6
EL10Ac2g02713 Beta vulgaris HOM05D003501 ORTHO05D004388 2.3e-24 117.5 104 52.9
SMO265G0024 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 6.6e-24 115.9 111 54.1
HPP92_000028 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.9e-23 114.4 86 65.1
HPP92_028228 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.9e-23 114.4 86 65.1
SMO269G0020 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 7.3e-23 112.5 97 58.8
HPP92_027915 Vanilla planifolia HOM05D003501 ORTHO05D004388 2.8e-22 110.5 84 64.3
Actinidia15652 Actinidia chinensis HOM05D003501 ORTHO05D004388 5.2e-21 106.3 70 71.4
SMO146G0031 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 7.6e-20 102.4 111 52.3
Mapoly0071s0005 Marchantia polymorpha HOM05D003501 ORTHO05D018303 1.4e-18 98.2 385 25.7
SMO194G0041 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 3.2e-18 97.1 100 52.0
SMO340G0317 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 7.8e-17 92.4 115 47.0
CDE12G0385 Ceratophyllum demersum HOM05D003501 ORTHO05D004388 1.6e-14 84.7 95 48.4
HPP92_000031 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.2e-12 78.6 93 47.3
Actinidia06069 Actinidia chinensis HOM05D003501 ORTHO05D004388 9.9e-12 75.5 172 33.1
HPP92_028227 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.3e-11 75.1 70 50.0
HPP92_028030 Vanilla planifolia HOM05D003501 ORTHO05D004388 2.9e-11 73.9 91 42.9
SMO364G0656 Selaginella moellendorffii HOM05D003501 ORTHO05D018303 1.4e-10 71.6 181 26.5
Glyma.07G212600 Glycine max HOM05D003501 ORTHO05D004388 2.4e-10 70.9 56 58.9
Actinidia15651 Actinidia chinensis HOM05D003501 ORTHO05D004388 3.2e-10 70.5 68 50.0
SEGI_12129 Sequoiadendron giganteum HOM05D003501 ORTHO05D004388 2.1e-09 67.8 67 43.3
EL10Ac4g08784 Beta vulgaris HOM05D003501 ORTHO05D004388 2.7e-09 67.4 143 32.9
MD11G1147100 Malus domestica HOM05D003501 ORTHO05D004388 3.5e-09 67.0 51 58.8
AL1G16300 Arabidopsis lyrata HOM05D003501 ORTHO05D004388 5.6e-07 59.7 100 39.0
SMO169G0251 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.6e-06 58.2 78 42.3


User provided reference genes

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