Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g10907 Chara braunii HOM05D004741 ORTHO05D005454 2.2e-301 1038.1 498 100.0
GSVIVG01009251001 Vitis vinifera HOM05D004741 ORTHO05D005454 4.1e-130 469.2 409 56.7
CSS0005545 Camellia sinensis var. sinensis HOM05D004741 ORTHO05D005454 2.0e-129 466.8 414 55.1
Oeu016078.1 Olea europaea HOM05D004741 ORTHO05D005454 1.3e-128 464.2 419 55.8
Zm00001eb215780 Zea mays HOM05D004741 ORTHO05D005454 3.8e-128 462.6 409 54.3
PSO210G2241 Papaver somniferum HOM05D004741 ORTHO05D005454 1.1e-127 461.1 411 56.0
PSO761G0470 Papaver somniferum HOM05D004741 ORTHO05D005454 1.9e-127 460.3 411 56.2
Thecc.09G013800 Theobroma cacao HOM05D004741 ORTHO05D005454 1.9e-127 460.3 411 54.7
TWI32G1217 Tripterygium wilfordii HOM05D004741 ORTHO05D005454 7.2e-127 458.4 419 53.0
Pp3c24_19510 Physcomitrium patens HOM05D004741 ORTHO05D005454 3.5e-126 456.1 423 52.5
Aqoxy5G01951 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 8.7e-125 451.4 409 55.3
ECA246G1320 Erigeron canadensis HOM05D004741 ORTHO05D005454 1.1e-124 451.1 413 53.3
Nn8g39668 Nelumbo nucifera HOM05D004741 ORTHO05D005454 1.1e-124 451.1 412 55.3
Cc00_g23510 Coffea canephora HOM05D004741 ORTHO05D005454 1.5e-124 450.7 411 54.0
MSTRG.20476 Avicennia marina HOM05D004741 ORTHO05D005454 1.9e-124 450.3 419 53.5
HanXRQChr10g0277671 Helianthus annuus HOM05D004741 ORTHO05D005454 1.9e-124 450.3 408 53.7
COL.COLO4_18967 Corchorus olitorius HOM05D004741 ORTHO05D005454 2.5e-124 449.9 419 52.3
Sc02g0008350 Simmondsia chinensis HOM05D004741 ORTHO05D005454 5.7e-124 448.7 430 53.3
Lsat_1_v5_gn_6_106561 Lactuca sativa HOM05D004741 ORTHO05D005454 7.4e-124 448.4 419 51.8
Eucgr.C04030 Eucalyptus grandis HOM05D004741 ORTHO05D005454 9.7e-124 448.0 419 52.5
Gohir.D11G176300 Gossypium hirsutum HOM05D004741 ORTHO05D005454 9.7e-124 448.0 409 53.3
Duzib168G2074 Durio zibethinus HOM05D004741 ORTHO05D005454 1.3e-123 447.6 409 52.8
Mapoly0014s0124 Marchantia polymorpha HOM05D004741 ORTHO05D005454 1.6e-123 447.2 407 54.5
Sed0002897 Sechium edule HOM05D004741 ORTHO05D005454 1.6e-123 447.2 407 53.8
CsaV3_2G032600 Cucumis sativus L. HOM05D004741 ORTHO05D005454 2.2e-123 446.8 413 53.3
MELO3C011313.2 Cucumis melo HOM05D004741 ORTHO05D005454 4.8e-123 445.7 413 53.3
QL02p018098 Quercus lobata HOM05D004741 ORTHO05D005454 4.8e-123 445.7 407 53.3
ClCG08G013810 Citrullus lanatus HOM05D004741 ORTHO05D005454 1.1e-122 444.5 407 53.8
AUR62035754 Chenopodium quinoa HOM05D004741 ORTHO05D005454 1.4e-122 444.1 409 53.8
Lsat_1_v5_gn_4_135621 Lactuca sativa HOM05D004741 ORTHO05D005454 1.4e-122 444.1 409 52.6
CiPaw.07G232700 Carya illinoinensis HOM05D004741 ORTHO05D005454 1.8e-122 443.7 411 53.0
Lj4A81G69 Lonicera japonica HOM05D004741 ORTHO05D005454 1.8e-122 443.7 467 49.3
Dinv22023 Davidia involucrata HOM05D004741 ORTHO05D005454 2.4e-122 443.4 408 53.7
TAR625G0772 Trochodendron aralioides HOM05D004741 ORTHO05D005454 3.1e-122 443.0 409 54.0
DCAR_020033 Daucus carota HOM05D004741 ORTHO05D005454 5.3e-122 442.2 419 51.8
EL10Ac1g02297 Beta vulgaris HOM05D004741 ORTHO05D005454 1.5e-121 440.7 409 55.3
Aa31LG2G18560 Aethionema arabicum HOM05D004741 ORTHO05D005454 4.5e-121 439.1 419 51.8
SMO145G0212 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 5.9e-121 438.7 407 54.3
Solyc07g017640.2 Solanum lycopersicum HOM05D004741 ORTHO05D005454 1.0e-120 438.0 407 53.6
THA.LOC104803607 Tarenaya hassleriana HOM05D004741 ORTHO05D005454 2.2e-120 436.8 435 50.8
CAN.G673.1 Capsicum annuum HOM05D004741 ORTHO05D005454 2.9e-120 436.4 407 53.6
Migut.K00575 Erythranthe guttata HOM05D004741 ORTHO05D005454 5.0e-120 435.6 422 50.0
vmacro21376 Vaccinium macrocarpon HOM05D004741 ORTHO05D005454 8.5e-120 434.9 450 49.3
Atru.chr7.2571 Acer truncatum HOM05D004741 ORTHO05D005454 3.2e-119 433.0 411 53.0
RcHm_v2.0_Chr6g0299131 Rosa chinensis HOM05D004741 ORTHO05D005454 3.2e-119 433.0 418 52.2
FvH4_2g41360 Fragaria vesca HOM05D004741 ORTHO05D005454 4.2e-119 432.6 420 50.5
Potri.018G015300 Populus trichocarpa HOM05D004741 ORTHO05D005454 5.5e-119 432.2 411 51.8
Lalb_Chr08g0244491 Lupinus albus HOM05D004741 ORTHO05D005454 7.2e-119 431.8 407 53.6
SMO284G0001 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 7.2e-119 431.8 407 53.6
ATR0767G225 Amborella trichopoda HOM05D004741 ORTHO05D005454 9.4e-119 431.4 415 51.8
Cre02.g146950 Chlamydomonas reinhardtii HOM05D004741 ORTHO05D005454 9.4e-119 431.4 451 48.6
Lj1g0020479 Lotus japonicus HOM05D004741 ORTHO05D005454 2.1e-118 430.3 417 52.3
Sopen07g006470 Solanum pennellii HOM05D004741 ORTHO05D005454 2.7e-118 429.9 407 52.8
arahy.Tifrunner.gnm1.ann1.68HE9A Arachis hypogaea HOM05D004741 ORTHO05D005454 3.6e-118 429.5 407 53.3
Thhalv10025305m.g Eutrema salsugineum HOM05D004741 ORTHO05D005454 3.6e-118 429.5 422 51.4
VMungo1309G1293 Vigna mungo HOM05D004741 ORTHO05D005454 4.6e-118 429.1 409 53.3
Glyma.04G059700 Glycine max HOM05D004741 ORTHO05D005454 6.1e-118 428.7 409 53.3
Peaxi162Scf00005g04810 Petunia axillaris HOM05D004741 ORTHO05D005454 6.1e-118 428.7 406 52.7
BraA03t15138Z Brassica rapa HOM05D004741 ORTHO05D005454 1.0e-117 427.9 410 52.0
Cfa013018 Carpinus fangiana HOM05D004741 ORTHO05D005454 1.0e-117 427.9 436 49.8
FAN15G2922 Fragaria x ananassa HOM05D004741 ORTHO05D005454 1.0e-117 427.9 420 50.2
Sp7g29560 Schrenkiella parvula HOM05D004741 ORTHO05D005454 1.0e-117 427.9 419 51.1
arahy.Tifrunner.gnm1.ann1.HM8GSV Arachis hypogaea HOM05D004741 ORTHO05D005454 1.4e-117 427.6 407 53.1
TPR.G1862 Trifolium pratense HOM05D004741 ORTHO05D005454 1.4e-117 427.6 411 51.6
CDE06G0415 Ceratophyllum demersum HOM05D004741 ORTHO05D005454 1.8e-117 427.2 407 52.8
BcaNung01502 Brassica carinata HOM05D004741 ORTHO05D005454 3.0e-117 426.4 409 51.3
Medtr3g105810 Medicago truncatula HOM05D004741 ORTHO05D005454 3.9e-117 426.0 425 50.8
unitig_744.g24377 Utricularia gibba HOM05D004741 ORTHO05D005454 3.9e-117 426.0 412 52.2
AT4G31770 Arabidopsis thaliana HOM05D004741 ORTHO05D005454 8.8e-117 424.9 409 52.1
SEGI_18909 Sequoiadendron giganteum HOM05D004741 ORTHO05D005454 8.8e-117 424.9 365 56.7
PGSC0003DMG400002300 Solanum tuberosum HOM05D004741 ORTHO05D005454 1.1e-116 424.5 372 54.8
CARHR239670 Cardamine hirsuta HOM05D004741 ORTHO05D005454 1.5e-116 424.1 409 50.9
Psat5g034520 Pisum sativum HOM05D004741 ORTHO05D005454 1.5e-116 424.1 423 50.6
C07p58870 Brassica napus HOM05D004741 ORTHO05D005454 3.3e-116 422.9 410 51.2
BolC7t46334H Brassica oleracea HOM05D004741 ORTHO05D005454 3.3e-116 422.9 410 51.2
Nitab4.5_0006397g0010 Nicotiana tabacum HOM05D004741 ORTHO05D005454 4.3e-116 422.5 367 55.9
AL7G20240 Arabidopsis lyrata HOM05D004741 ORTHO05D005454 5.7e-116 422.2 409 52.3
Sabra18G0018800 Salix brachista HOM05D004741 ORTHO05D005454 5.7e-116 422.2 407 51.8
Ca_15788_v3 Cicer arietinum L. HOM05D004741 ORTHO05D005454 1.3e-115 421.0 409 51.6
Manes.03G006700 Manihot esculenta HOM05D004741 ORTHO05D005454 1.3e-115 421.0 407 52.1
BcaNung04120 Brassica carinata HOM05D004741 ORTHO05D005454 1.7e-115 420.6 409 50.6
MD15G1043800 Malus domestica HOM05D004741 ORTHO05D005454 2.8e-115 419.9 419 49.4
A03p60970 Brassica napus HOM05D004741 ORTHO05D005454 4.8e-115 419.1 505 45.9
Carub.0007s0879 Capsella rubella HOM05D004741 ORTHO05D005454 8.2e-115 418.3 410 51.0
A08p18460 Brassica napus HOM05D004741 ORTHO05D005454 1.4e-114 417.5 410 51.2
Atru.BG.288.p Acer truncatum HOM05D004741 ORTHO05D005454 4.1e-114 416.0 411 50.9
BraA08t33808Z Brassica rapa HOM05D004741 ORTHO05D005454 6.9e-114 415.2 410 50.5
RcHm_v2.0_Chr2g0135121 Rosa chinensis HOM05D004741 ORTHO05D005454 1.5e-113 414.1 412 51.2
BcaB03g12718 Brassica carinata HOM05D004741 ORTHO05D005454 2.6e-113 413.3 411 50.6
Aqoxy1G00870 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 2.2e-112 410.2 410 51.5
MBI16_g14670_MAGBIO Magnolia biondii HOM05D004741 ORTHO05D005454 5.0e-112 409.1 419 50.4
C03p87550 Brassica napus HOM05D004741 ORTHO05D005454 9.4e-111 404.8 415 49.4
BolC3t21075H Brassica oleracea HOM05D004741 ORTHO05D005454 3.6e-110 402.9 415 49.2
Aqoxy4G02579 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 1.8e-109 400.6 404 52.0
Phvul.009G085900 Phaseolus vulgaris HOM05D004741 ORTHO05D005454 8.8e-109 398.3 372 53.2
Cpa.g.sc40.1 Carica papaya HOM05D004741 ORTHO05D005454 1.7e-107 394.0 325 56.3
SalBow7G0863 Salvia bowleyana HOM05D004741 ORTHO05D005454 6.1e-102 375.6 366 51.9
SalBow7G1987 Salvia bowleyana HOM05D004741 ORTHO05D005454 6.1e-102 375.6 366 52.2
PRCOL_00004462 Prasinoderma coloniale HOM05D004741 ORTHO05D005454 2.4e-98 363.6 447 43.8
Gohir.1Z049533 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.1e-98 363.2 412 46.1
BcaNung01500 Brassica carinata HOM05D004741 ORTHO05D005454 9.1e-98 361.7 409 47.2
MCO02G476 Micromonas commoda HOM05D004741 ORTHO05D005454 3.5e-97 359.8 311 55.3
Ah.04g152730 Amaranthus hybridus HOM05D004741 ORTHO05D005454 4.5e-97 359.4 381 49.1
HPP92_007721 Vanilla planifolia HOM05D004741 ORTHO05D005454 8.5e-96 355.1 366 49.2
Rhsim06G0068400 Rhododendron simsii HOM05D004741 ORTHO05D005454 4.4e-92 342.8 424 44.6
Gohir.A02G000200 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.5e-92 342.0 401 45.1
SGA_v2.0_scaffold443G51691 Striga asiatica HOM05D004741 ORTHO05D005454 4.8e-91 339.3 439 44.0
Gohir.A11G330400 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.8e-90 337.4 410 42.9
Gohir.A05G415901 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.7e-86 322.8 278 53.2
FvH4_6g29560 Fragaria vesca HOM05D004741 ORTHO05D005454 6.3e-83 312.4 353 46.5
SGA_v2.0_scaffold48G18066 Striga asiatica HOM05D004741 ORTHO05D005454 1.1e-82 311.6 359 46.2
FAN14G3005 Fragaria x ananassa HOM05D004741 ORTHO05D005454 2.0e-81 307.4 353 46.2
Nitab4.5_0000159g0030 Nicotiana tabacum HOM05D004741 ORTHO05D005454 3.5e-81 306.6 199 67.8
Hund05236 Selenicereus undatus HOM05D004741 ORTHO05D005454 3.8e-80 303.1 315 50.5
SGA_v2.0_scaffold24G10244 Striga asiatica HOM05D004741 ORTHO05D005454 1.1e-79 301.6 200 64.5
BcaC01g01061 Brassica carinata HOM05D004741 ORTHO05D005454 1.9e-79 300.8 352 45.2
Gohir.A07G233600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.8e-78 297.0 420 41.2
Cfa025655 Carpinus fangiana HOM05D004741 ORTHO05D005454 1.8e-77 294.3 411 40.6
Prupe.1G397300 Prunus persica HOM05D004741 ORTHO05D005454 3.4e-76 290.0 317 47.0
Dinv44899 Davidia involucrata HOM05D004741 ORTHO05D005454 2.2e-75 287.3 300 48.3
MD08G1051300 Malus domestica HOM05D004741 ORTHO05D005454 8.3e-75 285.4 273 53.1
AUR62033828 Chenopodium quinoa HOM05D004741 ORTHO05D005454 4.1e-74 283.1 386 42.5
Haze_27111 Corylus avellana HOM05D004741 ORTHO05D005454 2.6e-68 263.8 435 35.6
Gohir.A03G000005 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.2e-67 260.8 209 57.9
Gohir.A02G000050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.7e-67 260.0 209 56.5
Gohir.A09G249600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.9e-64 250.0 218 53.2
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.1e-63 248.4 384 39.1
Gohir.A12G001100 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.7e-62 243.0 310 42.6
BcaB02g11404 Brassica carinata HOM05D004741 ORTHO05D005454 2.6e-60 237.3 166 60.8
PSO210G0837 Papaver somniferum HOM05D004741 ORTHO05D005454 3.9e-56 223.4 165 61.2
AagrBONN_evm.TU.Sc2ySwM_369.559 Anthoceros agrestis HOM05D004741 ORTHO05D005454 1.4e-53 214.9 247 46.6
RcHm_v2.0_Chr1g0357361 Rosa chinensis HOM05D004741 ORTHO05D005454 4.6e-49 199.9 270 42.6
Gohir.1Z049306 Gossypium hirsutum HOM05D004741 ORTHO05D005454 9.6e-47 192.2 150 56.0
Gohir.1Z049408 Gossypium hirsutum HOM05D004741 ORTHO05D005454 9.6e-47 192.2 150 56.0
Gohir.1Z049565 Gossypium hirsutum HOM05D004741 ORTHO05D005454 9.6e-47 192.2 150 56.0
Gohir.1Z049424 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.1e-45 188.7 150 55.3
Gohir.1Z049489 Gossypium hirsutum HOM05D004741 ORTHO05D005454 9.3e-42 175.6 221 42.5
Gohir.A07G000083 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.7e-35 154.8 183 45.9
MD13G1228500 Malus domestica HOM05D004741 ORTHO05D005454 2.1e-33 147.9 119 52.9
Gohir.A12G001050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.6e-33 146.7 95 62.1
Lsat_1_v5_gn_9_90121 Lactuca sativa HOM05D000676 ORTHO05D001458 1.3e-30 138.7 108 53.7
Sopen07g006070 Solanum pennellii HOM05D004741 ORTHO05D005454 6.9e-29 132.9 85 64.7
Gohir.A04G148266 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.9e-27 126.7 215 37.2
Os03g0725300 Oryza sativa ssp. japonica HOM05D004741 ORTHO05D005454 1.1e-23 115.5 84 61.9
Gohir.D12G000832 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.9e-19 100.9 75 56.0
ATR0582G232 Amborella trichopoda HOM05D004741 ORTHO05D005454 4.2e-18 97.1 126 40.5
CAN.G1057.23 Capsicum annuum HOM05D004741 ORTHO05D005454 1.4e-10 72.0 132 34.8
Gohir.A13G000900 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.9e-10 71.6 94 45.7
SalBow7G3287 Salvia bowleyana HOM05D004741 ORTHO05D005454 1.8e-08 65.1 43 65.1
Pp3c16_14300 Physcomitrium patens HOM05D005251 ORTHO05D006680 8.7e-08 62.8 236 27.1
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 3.3e-07 60.8 78 41.0
PSO541G5767 Papaver somniferum HOM05D001230 ORTHO05D001067 1.6e-06 58.5 44 56.8
AagrBONN_evm.TU.Sc2ySwM_228.1764 Anthoceros agrestis HOM05D005251 ORTHO05D006680 3.7e-06 57.4 277 23.8


User provided reference genes

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