Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR239070 Cardamine hirsuta HOM05D002037 ORTHO05D005261 0.0e+00 3479.1 1909 100.0
AL7G20910 Arabidopsis lyrata HOM05D002037 ORTHO05D005261 0.0e+00 3036.5 1840 89.4
Carub.0007s0937 Capsella rubella HOM05D002037 ORTHO05D005261 0.0e+00 2991.1 1927 86.5
AT4G31160 Arabidopsis thaliana HOM05D002037 ORTHO05D005261 0.0e+00 2916.3 1918 85.2
Thhalv10024189m.g Eutrema salsugineum HOM05D002037 ORTHO05D005261 0.0e+00 2869.7 1951 82.0
BcaB03g12684 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 2780.7 1918 81.1
A03p60560 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 2777.3 1925 79.7
BraA03t15097Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 2775.3 1929 79.8
C07p58470 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 2773.0 1929 79.5
BolC7t46302H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 2768.8 1925 79.5
BolC3t21123H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 2738.4 1930 79.8
BcaC01g01107 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 2734.1 1843 81.2
A08p18770 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 2729.1 1932 79.4
BraA08t33838Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 2729.1 1932 79.4
C03p88150 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 2728.4 1855 80.1
Aa31LG2G19150 Aethionema arabicum HOM05D002037 ORTHO05D005261 0.0e+00 2444.5 1849 74.3
THA.LOC104803581 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 2389.4 1866 70.9
Sp7g29040 Schrenkiella parvula HOM05D002037 ORTHO05D005261 0.0e+00 2323.1 1443 87.6
THA.LOC104803889 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 2286.5 1944 67.7
BcaNung01540 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 2013.0 1432 79.7
Thecc.09G001100 Theobroma cacao HOM05D002037 ORTHO05D005261 0.0e+00 1999.9 1879 59.6
Ciclev10007230m.g Citrus clementina HOM05D002037 ORTHO05D005261 0.0e+00 1974.9 1843 60.1
Prupe.1G463700 Prunus persica HOM05D002037 ORTHO05D005261 0.0e+00 1961.8 1838 59.5
Gohir.D08G274900 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 1955.3 1852 59.6
Gorai.004G293400 Gossypium raimondii HOM05D002037 ORTHO05D005261 0.0e+00 1953.7 1873 58.8
Gohir.A08G253200 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 1953.3 1873 58.9
CiPaw.08G017100 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 1931.8 1914 57.3
RcHm_v2.0_Chr6g0312521 Rosa chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1922.9 1866 58.6
Potri.006G280200 Populus trichocarpa HOM05D002037 ORTHO05D005261 0.0e+00 1921.7 1846 58.8
Haze_21662 Corylus avellana HOM05D002037 ORTHO05D005261 0.0e+00 1918.3 1905 57.1
MD08G1132100 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 1917.1 1844 58.6
COL.COLO4_18641 Corchorus olitorius HOM05D002037 ORTHO05D005261 0.0e+00 1909.4 1844 58.2
Manes.16G138600 Manihot esculenta HOM05D002037 ORTHO05D005261 0.0e+00 1906.3 1849 59.0
FvH4_2g30560 Fragaria vesca HOM05D002037 ORTHO05D005261 0.0e+00 1904.0 1838 59.0
Glyma.06G075000 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 1902.5 1890 58.8
Cpa.g.sc148.12 Carica papaya HOM05D002037 ORTHO05D005261 0.0e+00 1899.8 1843 58.7
FAN27G2203 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 1898.6 1836 58.9
FAN24G1054 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 1898.2 1837 58.7
CiPaw.07G216200 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 1895.6 1875 57.2
MD15G1113300 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 1894.4 1834 59.2
arahy.Tifrunner.gnm1.ann1.WQ4U6A Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 1890.9 1864 58.1
Phvul.009G099700 Phaseolus vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 1890.5 1875 57.5
arahy.Tifrunner.gnm1.ann1.8Q3S3N Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 1889.0 1865 57.9
QL12p030895 Quercus lobata HOM05D002037 ORTHO05D005261 0.0e+00 1887.8 1883 57.5
TWI32G0793 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 1887.1 1890 57.3
TWI63G1280 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 1884.0 1912 56.6
Glyma.04G073900 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 1873.2 1918 58.0
VMungo1309G2917 Vigna mungo HOM05D002037 ORTHO05D005261 0.0e+00 1871.3 1875 57.2
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 0.0e+00 1861.3 1793 58.4
CSS0033264 Camellia sinensis var. sinensis HOM05D002037 ORTHO05D005261 0.0e+00 1860.5 1898 55.7
Duzib187G1591 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 1859.3 1889 56.7
Cfa013233 Carpinus fangiana HOM05D002037 ORTHO05D005261 0.0e+00 1859.0 1840 57.3
Lj7A751T36 Lonicera japonica HOM05D002037 ORTHO05D005261 0.0e+00 1851.6 1899 55.8
Atru.chr7.2709 Acer truncatum HOM05D002037 ORTHO05D005261 0.0e+00 1849.7 1824 57.7
CsaV3_3G046860 Cucumis sativus L. HOM05D002037 ORTHO05D005261 0.0e+00 1837.8 1876 55.5
Medtr3g108470 Medicago truncatula HOM05D002037 ORTHO05D005261 0.0e+00 1835.1 1876 56.9
PGR044G2064 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 1834.7 1864 58.3
CANSAT25G0165 Cannabis sativa HOM05D002037 ORTHO05D005261 0.0e+00 1832.4 1854 56.8
Lalb_Chr11g0064041 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 1827.0 1857 56.1
Sed0009824 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 1825.1 1854 56.1
TAR628G0359 Trochodendron aralioides HOM05D002037 ORTHO05D005261 0.0e+00 1822.4 1907 55.3
TPR.G12447 Trifolium pratense HOM05D002037 ORTHO05D005261 0.0e+00 1815.0 1856 56.7
MELO3C003650.2 Cucumis melo HOM05D002037 ORTHO05D005261 0.0e+00 1812.3 1913 54.5
Lalb_Chr08g0243691 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 1808.5 1901 55.7
Eucgr.C03980 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 1799.3 1841 56.4
PGR044G2421 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 1797.3 1823 56.5
Sopen08g023030 Solanum pennellii HOM05D002037 ORTHO05D005261 0.0e+00 1796.9 1876 55.9
Hund19377 Selenicereus undatus HOM05D002037 ORTHO05D005261 0.0e+00 1796.6 1882 54.6
ClCG05G017350 Citrullus lanatus HOM05D002037 ORTHO05D005261 0.0e+00 1794.6 1973 53.1
Psat5g026040 Pisum sativum HOM05D002037 ORTHO05D005261 0.0e+00 1792.7 1869 55.3
Solyc08g074370.4 Solanum lycopersicum HOM05D002037 ORTHO05D005261 0.0e+00 1791.5 1868 55.8
Sed0015816 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 1788.1 1899 54.3
HanXRQChr03g0082961 Helianthus annuus HOM05D002037 ORTHO05D005261 0.0e+00 1783.1 1810 55.9
CAN.G195.8 Capsicum annuum HOM05D002037 ORTHO05D005261 0.0e+00 1774.2 1883 55.0
FAN20G1121 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 1774.2 1825 56.6
Lj5g0025434 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1770.0 1879 54.8
Duzib168G1462 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 1767.3 1706 58.7
vmacro05091 Vaccinium macrocarpon HOM05D002037 ORTHO05D005261 0.0e+00 1758.0 1795 56.0
Sc09g0007440 Simmondsia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1757.7 1860 54.4
Lj1g0006019 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1751.5 1868 54.1
GSVIVG01035587001 Vitis vinifera HOM05D002037 ORTHO05D005261 0.0e+00 1749.6 1796 56.4
AUR62028065 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 1738.4 1870 53.9
ECA240G1370 Erigeron canadensis HOM05D002037 ORTHO05D005261 0.0e+00 1734.9 1809 54.9
Actinidia03327 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1732.2 1844 53.9
MSTRG.25765 Avicennia marina HOM05D002037 ORTHO05D005261 0.0e+00 1731.5 1884 53.7
EL10Ac2g03672 Beta vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 1731.1 1878 52.9
Aqoxy6G00128 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 0.0e+00 1726.1 1907 53.2
DCAR_002179 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 1726.1 1894 52.5
Cc00_g09840 Coffea canephora HOM05D002037 ORTHO05D005261 0.0e+00 1721.4 1896 52.6
Ca_15684_v3 Cicer arietinum L. HOM05D002037 ORTHO05D005261 0.0e+00 1719.5 1853 55.0
SGA_v2.0_scaffold193G40648 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 1718.0 1869 54.9
Migut.A00462 Erythranthe guttata HOM05D002037 ORTHO05D005261 0.0e+00 1710.7 1833 53.8
AUR62020667 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 1705.3 1869 53.2
SalBow4G1905 Salvia bowleyana HOM05D002037 ORTHO05D005261 0.0e+00 1694.1 1849 53.6
Lsat_1_v5_gn_5_59360 Lactuca sativa HOM05D002037 ORTHO05D005261 0.0e+00 1689.9 1800 53.8
SGA_v2.0_scaffold27G11691 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 1675.2 1904 52.0
Peaxi162Scf00213g01313 Petunia axillaris HOM05D002037 ORTHO05D005261 0.0e+00 1662.9 1833 53.2
PSO063G0181 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1662.5 1859 51.9
PSO017G1653 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1649.0 1865 51.3
ATR0584G173 Amborella trichopoda HOM05D002037 ORTHO05D005261 0.0e+00 1613.6 1840 51.1
DCAR_030972 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 1604.7 1911 49.9
CDE08G1677 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1571.2 1893 49.5
CDE02G1944 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1568.5 1913 48.8
Nn1g08375 Nelumbo nucifera HOM05D002037 ORTHO05D005261 0.0e+00 1550.0 1707 52.3
MBI09_g40924_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1538.5 1932 49.5
Rhsim07G0173400 Rhododendron simsii HOM05D002037 ORTHO05D005261 0.0e+00 1527.3 1723 52.7
HPP92_025041 Vanilla planifolia HOM05D002037 ORTHO05D005261 0.0e+00 1446.0 1915 46.4
Zm00001eb434410 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1430.2 1889 46.3
Zm00001eb076460 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1408.3 1867 46.3
Eucgr.C00279 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 1335.9 1279 58.7
Mapoly0062s0116 Marchantia polymorpha HOM05D002037 ORTHO05D005261 0.0e+00 1319.3 1981 43.2
Pp3c1_12700 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1293.9 1901 43.9
Pp3c1_12703 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1293.9 1901 43.9
Pp3c2_24840 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1293.1 1861 44.2
unitig_26.g8827 Utricularia gibba HOM05D002037 ORTHO05D005261 0.0e+00 1208.7 1874 43.4
Dinv37481 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1182.5 1247 55.9
MBI09_g01931_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1140.6 1561 48.0
Hma1.2p1_0214F.1_g090640 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1124.0 1208 56.6
Actinidia25728 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1114.8 1847 40.4
AagrBONN_evm.TU.Sc2ySwM_117.676 Anthoceros agrestis HOM05D002037 ORTHO05D005261 0.0e+00 1090.9 1795 41.0
Nitab4.5_0009273g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 3.9e-298 1029.2 1052 56.6
Lj1g0010809 Lotus japonicus HOM05D002037 ORTHO05D005261 6.0e-275 952.2 1367 45.9
CBR_g37392 Chara braunii HOM05D002037 ORTHO05D000002 1.2e-259 901.4 1638 40.5
Dinv09451 Davidia involucrata HOM05D002037 ORTHO05D005261 5.9e-254 882.5 921 54.3
Hma1.2p1_0319F.1_g123860 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 5.0e-253 879.4 977 53.0
Dinv09452 Davidia involucrata HOM05D002037 ORTHO05D005261 1.5e-241 841.3 899 54.9
Oeu057143.1 Olea europaea HOM05D002037 ORTHO05D005261 4.4e-233 813.1 1471 41.3
Migut.E01409 Erythranthe guttata HOM05D002037 ORTHO05D005261 2.3e-229 800.8 1791 33.8
Nitab4.5_0003528g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 1.6e-227 794.7 798 55.8
SEGI_24212 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 5.9e-222 776.2 809 54.9
PSO170G5891 Papaver somniferum HOM05D002037 ORTHO05D005261 1.6e-219 768.1 874 51.8
BcaNung01541 Brassica carinata HOM05D002037 ORTHO05D005261 1.6e-163 582.0 449 70.8
Hma1.2p1_0214F.1_g090650 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.0e-160 572.8 493 59.6
Glyma.14G131100 Glycine max HOM05D002037 ORTHO05D005261 2.4e-154 551.6 769 44.6
Os04g0691200 Oryza sativa ssp. japonica HOM05D002037 ORTHO05D005261 6.9e-154 550.1 699 44.8
SEGI_28363 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 7.7e-153 546.6 708 46.5
Dinv37482 Davidia involucrata HOM05D002037 ORTHO05D005261 1.4e-141 509.2 496 54.2
SHI50541 Sapria himalayana HOM05D002037 ORTHO05D005261 1.1e-132 479.6 663 46.2
Hma1.2p1_2010F.1_g311000 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 2.5e-127 461.8 339 65.8
Hma1.2p1_1382F.1_g279390 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.5e-116 426.0 433 54.3
Hma1.2p1_2176F.1_g316130 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.1e-114 419.9 434 53.2
Aqoxy4G02471 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 3.3e-103 381.7 1237 27.4
SHI21131 Sapria himalayana HOM05D002037 ORTHO05D005261 3.3e-103 381.7 338 59.2
FAN20G0200 Fragaria x ananassa HOM05D002037 ORTHO05D005261 1.7e-83 316.2 420 46.9
Migut.E01404 Erythranthe guttata HOM05D002037 ORTHO05D005261 3.7e-83 315.1 606 36.0
Cre17.g725450 Chlamydomonas reinhardtii HOM05D002037 ORTHO05D005261 2.7e-73 282.3 2063 22.5
Migut.E01403 Erythranthe guttata HOM05D002037 ORTHO05D005261 4.3e-71 275.0 461 38.4
Lj1g0019909 Lotus japonicus HOM05D002037 ORTHO05D005261 4.6e-57 228.4 162 69.1
Hund03252 Selenicereus undatus HOM05D002037 ORTHO05D005261 7.6e-52 211.1 869 27.3
SEGI_07751 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 4.2e-50 205.3 442 34.6
Hma1.2p1_1382F.1_g279380 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 7.1e-50 204.5 223 56.1
TPR.G39361 Trifolium pratense HOM05D002037 ORTHO05D005261 3.5e-49 202.2 261 45.6
Hma1.2p1_2176F.1_g316120 Hydrangea macrophylla HOM05D002037 ORTHO05D005586 2.1e-46 193.0 142 74.6
TPR.G7111 Trifolium pratense HOM05D002037 ORTHO05D005261 5.9e-36 158.3 167 60.5
Gohir.D08G274833 Gossypium hirsutum HOM05D002037 ORTHO05D005261 1.0e-32 147.5 77 90.9
Potri.006G280600 Populus trichocarpa HOM05D003201 ORTHO05D008914 6.5e-19 101.7 230 35.2
MD08G1134600 Malus domestica HOM05D002037 ORTHO05D005261 2.6e-15 89.7 109 47.7
Nitab4.5_0000919g0010 Nicotiana tabacum HOM05D002037 ORTHO05D021575 5.5e-10 72.0 88 44.3
Hund03253 Selenicereus undatus HOM05D002037 ORTHO05D005261 2.0e-07 63.5 49 55.1
Dinv03356 Davidia involucrata HOM05D002037 ORTHO05D005261 3.4e-07 62.8 76 50.0
Dinv42062 Davidia involucrata HOM05D000142 ORTHO05D000124 4.4e-07 62.4 60 53.3
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 2.2e-06 60.1 33 72.7


User provided reference genes

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