Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR204850 Cardamine hirsuta HOM05D004008 ORTHO05D005383 4.1e-215 751.1 383 100.0
AT5G08280 Arabidopsis thaliana HOM05D004008 ORTHO05D005383 7.3e-204 713.8 383 94.3
AL6G18680 Arabidopsis lyrata HOM05D004008 ORTHO05D005383 1.6e-203 712.6 383 94.5
Carub.0006s0716 Capsella rubella HOM05D004008 ORTHO05D005383 2.3e-202 708.8 383 93.5
Thhalv10013814m.g Eutrema salsugineum HOM05D004008 ORTHO05D005383 5.8e-201 704.1 383 92.4
Sp6g34680 Schrenkiella parvula HOM05D004008 ORTHO05D005383 4.1e-199 698.0 383 91.9
A10p28400 Brassica napus HOM05D004008 ORTHO05D005383 9.2e-199 696.8 383 91.1
BraA10t44887Z Brassica rapa HOM05D004008 ORTHO05D005383 9.2e-199 696.8 383 91.1
C09p68660 Brassica napus HOM05D004008 ORTHO05D005383 1.7e-197 692.6 383 90.9
Aa31LG3G18290 Aethionema arabicum HOM05D004008 ORTHO05D005383 6.6e-197 690.6 383 91.4
BolC9t59612H Brassica oleracea HOM05D004008 ORTHO05D005383 1.1e-196 689.9 383 90.6
BraA02t04947Z Brassica rapa HOM05D004008 ORTHO05D005383 1.1e-191 673.3 384 88.8
C02p03470 Brassica napus HOM05D004008 ORTHO05D005383 1.9e-191 672.5 384 88.8
BolC2t06308H Brassica oleracea HOM05D004008 ORTHO05D005383 3.5e-190 668.3 384 87.8
BcaNung05097 Brassica carinata HOM05D004008 ORTHO05D005383 4.3e-188 661.4 386 87.8
A03p03710 Brassica napus HOM05D004008 ORTHO05D005383 6.2e-187 657.5 385 87.5
BraA03t09719Z Brassica rapa HOM05D004008 ORTHO05D005383 6.2e-187 657.5 385 87.5
BcaB01g05618 Brassica carinata HOM05D004008 ORTHO05D005383 1.8e-186 656.0 384 87.2
BolC3t12952H Brassica oleracea HOM05D004008 ORTHO05D005383 1.8e-186 656.0 384 87.2
C03p04200 Brassica napus HOM05D004008 ORTHO05D005383 3.1e-186 655.2 384 86.7
BcaB08g37268 Brassica carinata HOM05D004008 ORTHO05D005383 4.9e-184 647.9 383 85.9
THA.LOC104800860 Tarenaya hassleriana HOM05D004008 ORTHO05D005383 7.6e-177 624.0 381 82.2
BcaC03g13214 Brassica carinata HOM05D004008 ORTHO05D005383 1.4e-175 619.8 384 83.1
Cpa.g.sc43.43 Carica papaya HOM05D004008 ORTHO05D005383 2.0e-161 572.8 375 78.1
CANSAT78G1304 Cannabis sativa HOM05D004008 ORTHO05D005383 1.2e-158 563.5 386 77.7
Haze_11762 Corylus avellana HOM05D004008 ORTHO05D005383 1.0e-157 560.5 380 76.1
Prupe.1G348400 Prunus persica HOM05D004008 ORTHO05D005383 3.9e-157 558.5 374 77.0
Eucgr.C00142 Eucalyptus grandis HOM05D004008 ORTHO05D005383 1.1e-156 557.0 384 76.0
Cfa008746 Carpinus fangiana HOM05D004008 ORTHO05D005383 3.3e-156 555.4 380 75.3
MD16G1003400 Malus domestica HOM05D004008 ORTHO05D005383 5.6e-156 554.7 386 74.1
Thecc.02G158900 Theobroma cacao HOM05D004008 ORTHO05D005383 5.6e-156 554.7 380 76.1
Gohir.A03G165100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 3.7e-155 552.0 357 78.2
MD13G1004100 Malus domestica HOM05D004008 ORTHO05D005383 3.7e-155 552.0 385 74.3
Gohir.D02G188300 Gossypium hirsutum HOM05D004008 ORTHO05D005383 4.8e-155 551.6 357 78.2
Gorai.005G211000 Gossypium raimondii HOM05D004008 ORTHO05D005383 4.8e-155 551.6 357 78.2
Manes.11G103000 Manihot esculenta HOM05D004008 ORTHO05D005383 8.1e-155 550.8 357 80.1
RcHm_v2.0_Chr4g0446801 Rosa chinensis HOM05D004008 ORTHO05D005383 8.1e-155 550.8 354 78.8
Ciclev10031858m.g Citrus clementina HOM05D004008 ORTHO05D005383 3.1e-154 548.9 374 76.2
CsaV3_3G031800 Cucumis sativus L. HOM05D004008 ORTHO05D005383 3.1e-154 548.9 365 75.9
Duzib132G0865 Durio zibethinus HOM05D004008 ORTHO05D005383 4.0e-154 548.5 383 74.7
PGR142G0362 Punica granatum HOM05D004008 ORTHO05D005383 5.3e-154 548.1 371 76.3
Sed0006741 Sechium edule HOM05D004008 ORTHO05D005383 5.3e-154 548.1 366 76.2
COL.COLO4_33043 Corchorus olitorius HOM05D004008 ORTHO05D005383 1.5e-153 546.6 395 73.9
Potri.007G072500 Populus trichocarpa HOM05D004008 ORTHO05D005383 5.8e-153 544.7 371 76.5
MSTRG.13067 Avicennia marina HOM05D004008 ORTHO05D005383 1.3e-152 543.5 382 74.6
CiPaw.01G129500 Carya illinoinensis HOM05D004008 ORTHO05D005383 1.3e-152 543.5 348 80.5
Gorai.012G134300 Gossypium raimondii HOM05D004008 ORTHO05D005383 2.2e-152 542.7 354 78.8
Oeu052004.1 Olea europaea HOM05D004008 ORTHO05D005383 4.9e-152 541.6 376 75.3
Migut.M01552 Erythranthe guttata HOM05D004008 ORTHO05D005383 6.5e-152 541.2 356 79.8
Lsat_1_v5_gn_7_112100 Lactuca sativa HOM05D004008 ORTHO05D005383 1.4e-151 540.0 355 78.9
ClCG10G012060 Citrullus lanatus HOM05D004008 ORTHO05D005383 2.5e-151 539.3 380 73.2
FAN12G0417 Fragaria x ananassa HOM05D004008 ORTHO05D005383 3.2e-151 538.9 359 77.7
VMungo1215G1012 Vigna mungo HOM05D004008 ORTHO05D005383 3.2e-151 538.9 324 83.0
Medtr4g076600 Medicago truncatula HOM05D004008 ORTHO05D005383 5.5e-151 538.1 364 77.2
Peaxi162Scf00452g00831 Petunia axillaris HOM05D004008 ORTHO05D005383 5.5e-151 538.1 358 76.5
Potri.005G091600 Populus trichocarpa HOM05D004008 ORTHO05D005383 5.5e-151 538.1 368 75.8
MSTRG.14544 Avicennia marina HOM05D004008 ORTHO05D005383 7.1e-151 537.7 383 73.4
Glyma.11G094700 Glycine max HOM05D004008 ORTHO05D005383 9.3e-151 537.3 354 77.7
Cc05_g16090 Coffea canephora HOM05D004008 ORTHO05D005383 1.6e-150 536.6 372 74.5
Duzib248G1235 Durio zibethinus HOM05D004008 ORTHO05D005383 1.6e-150 536.6 356 77.5
Lj1A905T43 Lonicera japonica HOM05D004008 ORTHO05D005383 1.6e-150 536.6 354 78.2
Ca_26057_v3 Cicer arietinum L. HOM05D004008 ORTHO05D005383 2.1e-150 536.2 356 77.5
Dinv19616 Davidia involucrata HOM05D004008 ORTHO05D005383 2.1e-150 536.2 364 75.5
Glyma.01G227400 Glycine max HOM05D004008 ORTHO05D005383 2.1e-150 536.2 346 78.6
CSS0024885 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 3.5e-150 535.4 358 78.2
Glyma.12G021100 Glycine max HOM05D004008 ORTHO05D005383 4.6e-150 535.0 327 82.3
QL12p007515 Quercus lobata HOM05D004008 ORTHO05D005383 4.6e-150 535.0 369 76.2
GSVIVG01002505001 Vitis vinifera HOM05D004008 ORTHO05D005383 4.6e-150 535.0 324 82.7
Dinv42507 Davidia involucrata HOM05D004008 ORTHO05D005383 7.9e-150 534.3 358 76.8
Actinidia12791 Actinidia chinensis HOM05D004008 ORTHO05D005383 1.3e-149 533.5 355 77.5
arahy.Tifrunner.gnm1.ann1.6Z73IP Arachis hypogaea HOM05D004008 ORTHO05D005383 2.3e-149 532.7 341 79.8
Psat7g172760 Pisum sativum HOM05D004008 ORTHO05D005383 3.0e-149 532.3 356 77.0
TWI75G1091 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 3.0e-149 532.3 383 73.9
LjContig00222g0009052 Lotus japonicus HOM05D004008 ORTHO05D005383 6.7e-149 531.2 324 82.1
Sopen07g034650 Solanum pennellii HOM05D004008 ORTHO05D005383 6.7e-149 531.2 358 77.4
Migut.H01689 Erythranthe guttata HOM05D004008 ORTHO05D005383 1.1e-148 530.4 387 72.6
Phvul.011G177100 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 1.1e-148 530.4 339 79.4
Solyc07g066470.3 Solanum lycopersicum HOM05D004008 ORTHO05D005383 1.5e-148 530.0 358 77.1
FAN07G1552 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.9e-148 529.6 359 76.6
PGSC0003DMG400022126 Solanum tuberosum HOM05D004008 ORTHO05D005383 2.5e-148 529.3 358 76.8
SalBow8G2118 Salvia bowleyana HOM05D004008 ORTHO05D005383 3.3e-148 528.9 353 75.6
TPR.G11683 Trifolium pratense HOM05D004008 ORTHO05D005383 3.3e-148 528.9 364 75.8
arahy.Tifrunner.gnm1.ann1.416KLQ Arachis hypogaea HOM05D004008 ORTHO05D005383 5.7e-148 528.1 356 76.4
Phvul.002G034500 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 7.4e-148 527.7 344 77.6
TAR626G0539 Trochodendron aralioides HOM05D004008 ORTHO05D005383 7.4e-148 527.7 352 76.7
TAR626G1776 Trochodendron aralioides HOM05D004008 ORTHO05D005383 7.4e-148 527.7 352 76.7
VMungo1127G2017 Vigna mungo HOM05D004008 ORTHO05D005383 7.4e-148 527.7 335 79.7
arahy.Tifrunner.gnm1.ann1.KXDS8S Arachis hypogaea HOM05D004008 ORTHO05D005383 9.6e-148 527.3 367 74.9
Hma1.2p1_0637F.1_g193530 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 9.6e-148 527.3 361 73.7
SGA_v2.0_scaffold186G40215 Striga asiatica HOM05D004008 ORTHO05D005383 1.6e-147 526.6 399 69.9
Hma1.2p1_0334F.1_g128730 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 2.8e-147 525.8 355 76.9
TWI12G0055 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 3.7e-147 525.4 384 73.7
Gohir.A04G108500 Gossypium hirsutum HOM05D004008 ORTHO05D005383 8.2e-147 524.2 352 77.3
CAN.G943.40 Capsicum annuum HOM05D004008 ORTHO05D005383 1.1e-146 523.9 351 76.1
RcHm_v2.0_Chr1g0330101 Rosa chinensis HOM05D004008 ORTHO05D005383 1.1e-146 523.9 366 73.8
FvH4_7g04700 Fragaria vesca HOM05D004008 ORTHO05D005383 2.4e-146 522.7 368 73.1
FAN10G2193 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.4e-146 522.7 368 73.1
Nitab4.5_0001791g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 2.4e-146 522.7 373 73.5
HanXRQChr01g0007731 Helianthus annuus HOM05D004008 ORTHO05D005383 3.1e-146 522.3 343 78.4
unitig_21.g20251 Utricularia gibba HOM05D004008 ORTHO05D005383 9.0e-146 520.8 385 70.6
Sc10g0004580 Simmondsia chinensis HOM05D004008 ORTHO05D005383 3.4e-145 518.8 353 74.2
HanXRQChr05g0153591 Helianthus annuus HOM05D004008 ORTHO05D005383 4.5e-145 518.5 355 76.3
Nitab4.5_0000134g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 4.5e-145 518.5 373 72.9
Lalb_Chr09g0320431 Lupinus albus HOM05D004008 ORTHO05D005383 5.8e-145 518.1 365 74.0
Peaxi162Scf00006g00139 Petunia axillaris HOM05D004008 ORTHO05D005383 1.7e-144 516.5 376 72.9
FAN03G0704 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.2e-144 516.2 352 74.7
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.1e-143 513.8 356 74.2
FAN06G1123 Fragaria x ananassa HOM05D004008 ORTHO05D005383 4.2e-143 511.9 365 72.6
FAN06G2867 Fragaria x ananassa HOM05D004008 ORTHO05D005383 4.2e-143 511.9 365 72.6
ECA248G2166 Erigeron canadensis HOM05D004008 ORTHO05D005383 9.3e-143 510.8 317 82.0
EL10Ac2g02758 Beta vulgaris HOM05D004008 ORTHO05D005383 1.2e-142 510.4 332 77.1
Ah.10g029970 Amaranthus hybridus HOM05D004008 ORTHO05D005383 2.1e-142 509.6 348 74.1
Sabra07G0061100 Salix brachista HOM05D004008 ORTHO05D005383 2.1e-142 509.6 449 62.6
Rhsim06G0054400 Rhododendron simsii HOM05D004008 ORTHO05D005383 3.5e-142 508.8 349 74.8
Aqoxy6G00207 Aquilegia oxysepala HOM05D004008 ORTHO05D005383 1.0e-141 507.3 350 74.9
ATR0763G059 Amborella trichopoda HOM05D004008 ORTHO05D005383 1.8e-141 506.5 322 79.8
FAN17G0554 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.3e-141 506.1 301 83.1
PSO541G2232 Papaver somniferum HOM05D004008 ORTHO05D005383 2.3e-141 506.1 363 73.8
PSO675G0755 Papaver somniferum HOM05D004008 ORTHO05D005383 6.7e-141 504.6 363 73.8
CDE05G3126 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 3.3e-140 502.3 352 73.9
Hund13394 Selenicereus undatus HOM05D004008 ORTHO05D005383 5.7e-140 501.5 323 78.3
CDE11G0020 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 1.3e-139 500.4 359 73.3
MBI18_g03839_MAGBIO Magnolia biondii HOM05D004008 ORTHO05D005383 1.3e-139 500.4 330 77.6
CSS0025050 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 2.2e-139 499.6 357 75.1
AUR62031735 Chenopodium quinoa HOM05D004008 ORTHO05D005383 2.8e-139 499.2 364 70.6
Sabra05G0076100 Salix brachista HOM05D004008 ORTHO05D005383 2.8e-139 499.2 435 63.0
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 3.7e-139 498.8 391 67.8
AUR62032620 Chenopodium quinoa HOM05D004008 ORTHO05D005383 6.3e-139 498.0 369 69.6
SGA_v2.0_scaffold7G03592 Striga asiatica HOM05D004008 ORTHO05D005383 3.1e-138 495.7 383 69.2
CDE02G2123 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 9.0e-138 494.2 321 78.2
HPP92_002271 Vanilla planifolia HOM05D004008 ORTHO05D005383 1.2e-137 493.8 334 74.6
Gohir.D04G148100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.1e-135 487.3 286 85.0
Lj4g0025599 Lotus japonicus HOM05D004008 ORTHO05D005383 1.9e-135 486.5 321 77.6
MELO3C024010.2 Cucumis melo HOM05D004008 ORTHO05D005383 1.2e-134 483.8 286 83.9
vmacro11667 Vaccinium macrocarpon HOM05D004008 ORTHO05D005383 2.1e-134 483.0 437 61.8
Os02g0168800 Oryza sativa ssp. japonica HOM05D004008 ORTHO05D005383 3.0e-133 479.2 323 74.3
Zm00001eb207370 Zea mays HOM05D004008 ORTHO05D005383 3.9e-133 478.8 336 72.0
Mapoly0015s0060 Marchantia polymorpha HOM05D004008 ORTHO05D005383 8.8e-133 477.6 334 73.4
Pp3c5_16770 Physcomitrium patens HOM05D004008 ORTHO05D005383 1.3e-131 473.8 348 71.0
Pp3c6_15990 Physcomitrium patens HOM05D004008 ORTHO05D005383 6.3e-131 471.5 348 69.8
Pp3c15_6300 Physcomitrium patens HOM05D004008 ORTHO05D005383 1.1e-130 470.7 328 73.8
DCAR_013737 Daucus carota HOM05D004008 ORTHO05D005383 9.1e-130 467.6 287 82.2
SEGI_21965 Sequoiadendron giganteum HOM05D004008 ORTHO05D005383 7.7e-129 464.5 299 76.9
Zm00001eb233020 Zea mays HOM05D004008 ORTHO05D005383 2.9e-128 462.6 299 76.3
SMO364G0819 Selaginella moellendorffii HOM05D004008 ORTHO05D005383 5.0e-128 461.8 332 72.3
CBR_g48425 Chara braunii HOM05D004008 ORTHO05D005383 2.3e-125 453.0 338 68.6
TAR624G0715 Trochodendron aralioides HOM05D004008 ORTHO05D005383 7.0e-122 441.4 317 73.2
Cre16.g663900 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D005383 2.2e-112 409.8 311 67.2
MCO01G747 Micromonas commoda HOM05D004008 ORTHO05D005383 2.2e-107 393.3 322 63.7
Sed0020742 Sechium edule HOM05D004008 ORTHO05D005383 4.5e-105 385.6 246 79.7
Oeu001944.1 Olea europaea HOM05D004008 ORTHO05D005383 3.6e-102 375.9 260 76.5
FvH4_4g37020 Fragaria vesca HOM05D004008 ORTHO05D005383 8.8e-101 371.3 264 76.5
PRCOL_00005560 Prasinoderma coloniale HOM05D004008 ORTHO05D005383 3.6e-94 349.4 289 62.3
AagrBONN_evm.TU.Sc2ySwM_117.3714 Anthoceros agrestis HOM05D004008 ORTHO05D005383 3.7e-91 339.3 306 63.1
Psat5g025240 Pisum sativum HOM05D004008 ORTHO05D005383 1.2e-73 281.2 310 54.5
Haze_26918 Corylus avellana HOM05D004008 ORTHO05D163716 1.6e-70 270.8 308 51.9
arahy.Tifrunner.gnm1.ann1.VI50KN Arachis hypogaea HOM05D004008 ORTHO05D005383 2.9e-67 260.0 179 76.5
BcaC07g39332 Brassica carinata HOM05D004008 ORTHO05D032875 2.9e-67 260.0 228 67.1
Nn7g38125 Nelumbo nucifera HOM05D004008 ORTHO05D005383 7.8e-65 251.9 190 71.1
Actinidia07354 Actinidia chinensis HOM05D004008 ORTHO05D005383 3.1e-61 240.0 167 70.7
C08p23470 Brassica napus HOM05D004008 ORTHO05D032875 6.8e-61 238.8 228 63.2
BolC8t49976H Brassica oleracea HOM05D004008 ORTHO05D032875 6.8e-61 238.8 228 63.2
Glyma.11G015433 Glycine max HOM05D004008 ORTHO05D005383 1.0e-48 198.4 112 83.0
Psat5g278360 Pisum sativum HOM05D004008 ORTHO05D000002 1.4e-42 177.9 161 62.7
BcaC08g43816 Brassica carinata HOM05D004008 ORTHO05D013026 5.1e-40 169.5 104 78.8
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 3.3e-39 166.8 102 80.4
C09p39940 Brassica napus HOM05D004008 ORTHO05D027220 3.3e-39 166.8 102 80.4
C03p57930 Brassica napus HOM05D004008 ORTHO05D027220 2.1e-38 164.1 102 79.4
BolC9t56891H Brassica oleracea HOM05D004008 ORTHO05D013026 1.8e-37 161.0 106 75.5
C02p56520 Brassica napus HOM05D000109 ORTHO05D000210 9.0e-37 158.7 98 78.6
BcaC03g17816 Brassica carinata HOM05D003055 ORTHO05D013026 5.8e-36 156.0 107 71.0
C02p58390 Brassica napus HOM05D003055 ORTHO05D013026 8.4e-35 152.1 106 70.8
Cre02.g113850 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D145669 2.1e-30 137.5 284 32.7
BolC3t18065H Brassica oleracea HOM05D003055 ORTHO05D013026 1.8e-21 107.8 64 79.7
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 1.8e-16 91.3 49 91.8
TPR.G13755 Trifolium pratense HOM05D004008 ORTHO05D410752 5.1e-16 89.7 67 73.1
Rhsim06G0151600 Rhododendron simsii HOM05D001371 ORTHO05D001319 2.4e-13 80.9 61 72.1
C05p24790 Brassica napus HOM05D003055 ORTHO05D013026 4.5e-12 76.6 38 89.5
BcaC01g02956 Brassica carinata HOM05D003055 ORTHO05D013026 5.0e-11 73.2 38 86.8


User provided reference genes

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