Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR203490 Cardamine hirsuta HOM05D006110 ORTHO05D007774 0.0e+00 1180.6 597 100.0
AL6G20270 Arabidopsis lyrata HOM05D006110 ORTHO05D007774 0.0e+00 1097.0 589 94.6
AT5G09860 Arabidopsis thaliana HOM05D006110 ORTHO05D007774 0.0e+00 1090.1 590 94.1
Carub.0006s0829 Capsella rubella HOM05D006110 ORTHO05D007774 5.8e-309 1063.5 588 92.3
Sp6g33550 Schrenkiella parvula HOM05D006110 ORTHO05D007774 1.4e-307 1058.9 595 91.1
A02p00200 Brassica napus HOM05D006110 ORTHO05D007774 3.2e-307 1057.7 597 90.8
C02p04120 Brassica napus HOM05D006110 ORTHO05D007774 8.7e-305 1049.7 619 88.0
BraA02t05004Z Brassica rapa HOM05D006110 ORTHO05D007774 8.7e-305 1049.7 619 87.9
BolC2t06374H Brassica oleracea HOM05D006110 ORTHO05D007774 2.6e-301 1038.1 623 86.8
BcaB05g21524 Brassica carinata HOM05D006110 ORTHO05D007774 1.9e-296 1021.9 599 88.1
BcaC03g13281 Brassica carinata HOM05D006110 ORTHO05D007774 1.6e-295 1018.8 600 88.0
Thhalv10013059m.g Eutrema salsugineum HOM05D006110 ORTHO05D007774 1.1e-291 1006.1 589 89.0
Aa31LG1G21560 Aethionema arabicum HOM05D006110 ORTHO05D007774 2.5e-291 1005.0 598 87.5
THA.LOC104826748 Tarenaya hassleriana HOM05D006110 ORTHO05D007774 2.5e-288 995.0 602 86.0
Manes.04G156400 Manihot esculenta HOM05D006110 ORTHO05D007774 4.0e-265 917.9 602 79.1
QL07p029279 Quercus lobata HOM05D006110 ORTHO05D007774 1.2e-261 906.4 605 76.4
QL04p021435 Quercus lobata HOM05D006110 ORTHO05D007774 1.6e-261 906.0 605 76.4
Cfa010950 Carpinus fangiana HOM05D006110 ORTHO05D007774 2.7e-261 905.2 604 76.5
CiPaw.06G056300 Carya illinoinensis HOM05D006110 ORTHO05D007774 3.5e-261 904.8 601 77.0
GSVIVG01036611001 Vitis vinifera HOM05D006110 ORTHO05D007774 7.2e-259 897.1 577 78.5
GSVIVG01036631001 Vitis vinifera HOM05D006110 ORTHO05D007774 9.4e-259 896.7 577 78.5
Atru.chr12.1309 Acer truncatum HOM05D006110 ORTHO05D007774 2.1e-258 895.6 600 77.7
Ciclev10000631m.g Citrus clementina HOM05D006110 ORTHO05D007774 2.0e-256 889.0 588 77.7
Duzib106G1787 Durio zibethinus HOM05D006110 ORTHO05D007774 3.4e-256 888.3 618 75.2
Potri.001G031700 Populus trichocarpa HOM05D006110 ORTHO05D007774 1.7e-255 885.9 588 77.9
Prupe.7G006200 Prunus persica HOM05D006110 ORTHO05D007774 2.2e-255 885.6 602 76.4
COL.COLO4_06638 Corchorus olitorius HOM05D006110 ORTHO05D007774 6.3e-255 884.0 601 75.5
Dinv11233 Davidia involucrata HOM05D006110 ORTHO05D007774 8.3e-255 883.6 587 77.0
Sed0024249 Sechium edule HOM05D006110 ORTHO05D007774 8.3e-255 883.6 603 74.8
Eucgr.E03954 Eucalyptus grandis HOM05D006110 ORTHO05D007774 5.4e-254 880.9 601 75.7
CsaV3_5G023770 Cucumis sativus L. HOM05D006110 ORTHO05D007774 2.0e-253 879.0 605 74.5
Gorai.012G019300 Gossypium raimondii HOM05D006110 ORTHO05D007774 5.9e-253 877.5 602 75.1
Gohir.A05G399300 Gossypium hirsutum HOM05D006110 ORTHO05D007774 1.0e-252 876.7 602 75.1
Potri.003G194000 Populus trichocarpa HOM05D006110 ORTHO05D007774 1.7e-252 875.9 588 77.0
MELO3C022813.2 Cucumis melo HOM05D006110 ORTHO05D007774 5.0e-252 874.4 605 74.4
RcHm_v2.0_Chr1g0327151 Rosa chinensis HOM05D006110 ORTHO05D007774 5.5e-251 870.9 604 74.5
CANSAT56G0825 Cannabis sativa HOM05D006110 ORTHO05D007774 2.8e-250 868.6 609 74.2
MSTRG.16978 Avicennia marina HOM05D006110 ORTHO05D007774 3.6e-250 868.2 602 74.3
Glyma.04G133800 Glycine max HOM05D006110 ORTHO05D007774 4.7e-250 867.8 598 74.2
FAN03G2625 Fragaria x ananassa HOM05D006110 ORTHO05D007774 6.1e-250 867.5 605 74.0
VMungo1080G0231 Vigna mungo HOM05D006110 ORTHO05D007774 1.8e-249 865.9 598 74.7
EL10Ac7g17197 Beta vulgaris HOM05D006110 ORTHO05D007774 3.0e-249 865.1 601 74.0
Actinidia07968 Actinidia chinensis HOM05D006110 ORTHO05D007774 6.8e-249 864.0 525 81.7
FvH4_7g03810 Fragaria vesca HOM05D006110 ORTHO05D007774 1.2e-248 863.2 588 75.5
Phvul.005G004500 Phaseolus vulgaris HOM05D006110 ORTHO05D007774 2.0e-248 862.4 584 75.9
FAN10G4343 Fragaria x ananassa HOM05D006110 ORTHO05D007774 7.0e-246 854.0 594 74.4
TPR.G7074 Trifolium pratense HOM05D006110 ORTHO05D007774 9.2e-246 853.6 595 72.8
MD14G1003800 Malus domestica HOM05D006110 ORTHO05D007774 1.2e-245 853.2 599 74.1
Gohir.D04G016600 Gossypium hirsutum HOM05D006110 ORTHO05D007774 2.0e-245 852.4 602 73.6
arahy.Tifrunner.gnm1.ann1.P4BN3A Arachis hypogaea HOM05D006110 ORTHO05D007774 2.7e-245 852.0 598 73.6
Haze_02994 Corylus avellana HOM05D006110 ORTHO05D007774 7.8e-245 850.5 600 73.0
arahy.Tifrunner.gnm1.ann1.Y0U2QZ Arachis hypogaea HOM05D006110 ORTHO05D007774 1.0e-244 850.1 598 73.4
CAN.G134.27 Capsicum annuum HOM05D006110 ORTHO05D007774 2.9e-244 848.6 587 74.3
Rhsim07G0069200 Rhododendron simsii HOM05D006110 ORTHO05D007774 2.9e-244 848.6 639 70.3
CSS0009585 Camellia sinensis var. sinensis HOM05D006110 ORTHO05D007774 1.1e-243 846.7 597 74.2
Solyc01g096600.4 Solanum lycopersicum HOM05D006110 ORTHO05D007774 1.1e-243 846.7 588 73.6
Sc17g0003940 Simmondsia chinensis HOM05D006110 ORTHO05D007774 2.5e-243 845.5 525 80.6
Sopen01g040330 Solanum pennellii HOM05D006110 ORTHO05D007774 7.3e-243 844.0 588 73.3
FAN06G2813 Fragaria x ananassa HOM05D006110 ORTHO05D007774 1.2e-242 843.2 613 72.3
Lj3g0023685 Lotus japonicus HOM05D006110 ORTHO05D007774 1.2e-242 843.2 598 72.4
ECA233G5267 Erigeron canadensis HOM05D006110 ORTHO05D007774 2.3e-241 839.0 599 71.6
Peaxi162Scf00220g00411 Petunia axillaris HOM05D006110 ORTHO05D007774 4.4e-240 834.7 601 71.2
Psat5g221960 Pisum sativum HOM05D006110 ORTHO05D007774 9.8e-240 833.6 591 72.3
HanXRQChr02g0048711 Helianthus annuus HOM05D006110 ORTHO05D007774 1.7e-239 832.8 585 73.3
TAR625G0603 Trochodendron aralioides HOM05D006110 ORTHO05D007774 2.2e-239 832.4 586 73.9
Lalb_Chr20g0109671 Lupinus albus HOM05D006110 ORTHO05D007774 3.7e-239 831.6 599 71.5
Lsat_1_v5_gn_6_13001 Lactuca sativa HOM05D006110 ORTHO05D007774 1.8e-238 829.3 532 77.6
Lalb_Chr20g0109811 Lupinus albus HOM05D006110 ORTHO05D007774 4.1e-238 828.2 599 71.3
Migut.B01193 Erythranthe guttata HOM05D006110 ORTHO05D007774 3.0e-236 822.0 540 76.3
MBI03_g05118_MAGBIO Magnolia biondii HOM05D006110 ORTHO05D007774 3.6e-234 815.1 588 71.6
Aqoxy3G04239 Aquilegia oxysepala HOM05D006110 ORTHO05D007774 3.1e-233 812.0 580 73.1
Nn3g19142 Nelumbo nucifera HOM05D006110 ORTHO05D007774 4.9e-231 804.7 513 78.0
Nn8g38623 Nelumbo nucifera HOM05D006110 ORTHO05D007774 2.4e-230 802.4 604 70.7
PSO782G1399 Papaver somniferum HOM05D006110 ORTHO05D007774 2.4e-230 802.4 585 71.6
PGR031G3177 Punica granatum HOM05D006110 ORTHO05D007774 1.6e-229 799.7 579 72.7
PSO063G0799 Papaver somniferum HOM05D006110 ORTHO05D007774 6.0e-229 797.7 585 71.1
ATR0618G428 Amborella trichopoda HOM05D006110 ORTHO05D007774 1.3e-228 796.6 593 70.7
Sabra01G0022800 Salix brachista HOM05D006110 ORTHO05D007774 3.0e-228 795.4 783 58.5
COL.COLO4_19610 Corchorus olitorius HOM05D006110 ORTHO05D007774 5.6e-227 791.2 628 67.8
vmacro13769 Vaccinium macrocarpon HOM05D006110 ORTHO05D007774 1.3e-223 780.0 682 62.5
Os03g0110400 Oryza sativa ssp. japonica HOM05D006110 ORTHO05D007774 3.9e-220 768.5 588 67.3
Zm00001eb000780 Zea mays HOM05D006110 ORTHO05D007774 2.8e-218 762.3 577 68.1
CDE05G1199 Ceratophyllum demersum HOM05D006110 ORTHO05D007774 4.7e-218 761.5 565 69.6
Ah.08g212940 Amaranthus hybridus HOM05D006110 ORTHO05D007774 3.8e-215 751.9 601 66.2
SalBow5G1256 Salvia bowleyana HOM05D006110 ORTHO05D007774 1.2e-213 746.9 613 65.6
Nitab4.5_0002838g0090 Nicotiana tabacum HOM05D006110 ORTHO05D007774 6.6e-212 741.1 520 72.9
Oeu014626.1 Olea europaea HOM05D006110 ORTHO05D007774 5.8e-208 728.0 510 73.3
SGA_v2.0_scaffold342G49409 Striga asiatica HOM05D006110 ORTHO05D007774 2.5e-203 712.6 654 61.0
unitig_26.g9755 Utricularia gibba HOM05D006110 ORTHO05D007774 3.6e-202 708.8 584 64.9
AUR62033702 Chenopodium quinoa HOM05D006110 ORTHO05D007774 2.0e-200 703.0 729 55.6
SMO134G0202 Selaginella moellendorffii HOM05D006110 ORTHO05D007774 2.2e-199 699.5 526 66.3
Mapoly0007s0076 Marchantia polymorpha HOM05D006110 ORTHO05D007774 3.5e-197 692.2 584 62.0
Thecc.10G142600 Theobroma cacao HOM05D006110 ORTHO05D007774 1.8e-193 679.9 452 76.8
AagrBONN_evm.TU.Sc2ySwM_228.3473 Anthoceros agrestis HOM05D006110 ORTHO05D007774 4.0e-193 678.7 594 61.1
Pp3c2_4660 Physcomitrium patens HOM05D006110 ORTHO05D007774 2.1e-189 666.4 559 62.3
AUR62036785 Chenopodium quinoa HOM05D006110 ORTHO05D007774 2.7e-189 666.0 601 61.7
AagrBONN_evm.TU.Sc2ySwM_228.3474 Anthoceros agrestis HOM05D006110 ORTHO05D007774 2.3e-188 662.9 573 62.5
Cc00_g06110 Coffea canephora HOM05D006110 ORTHO05D007774 7.4e-179 631.3 443 72.7
ClCG05G014210 Citrullus lanatus HOM05D006110 ORTHO05D007774 1.1e-174 617.5 455 71.0
TPR.G1403 Trifolium pratense HOM05D006110 ORTHO05D007774 5.2e-148 528.9 389 68.6
DCAR_022366 Daucus carota HOM05D006110 ORTHO05D007774 1.5e-134 484.2 377 66.6
HPP92_005051 Vanilla planifolia HOM05D006110 ORTHO05D007774 1.3e-127 461.1 328 71.6
Cpa.g.sc51.83 Carica papaya HOM05D006110 ORTHO05D007774 1.9e-126 457.2 270 81.5
Lj9C658T8 Lonicera japonica HOM05D006110 ORTHO05D007774 4.3e-126 456.1 289 81.0
CBR_g45491 Chara braunii HOM05D006110 ORTHO05D007774 4.1e-121 439.5 554 45.8
SEGI_32708 Sequoiadendron giganteum HOM05D006110 ORTHO05D007774 1.0e-119 434.9 311 71.1
Nitab4.5_0004168g0080 Nicotiana tabacum HOM05D006110 ORTHO05D007774 9.5e-102 375.2 388 55.9
Hund24435 Selenicereus undatus HOM05D006110 ORTHO05D007774 6.9e-92 342.4 260 69.6
Hund12548 Selenicereus undatus HOM05D006110 ORTHO05D007774 1.5e-91 341.3 245 71.8
Sed0017067 Sechium edule HOM05D006110 ORTHO05D007774 8.4e-90 335.5 188 86.2
HPP92_005075 Vanilla planifolia HOM05D006110 ORTHO05D007774 5.3e-84 316.2 217 69.6
PRCOL_00001172 Prasinoderma coloniale HOM05D006110 ORTHO05D007774 8.4e-74 282.3 446 37.2
Lj9A658T58 Lonicera japonica HOM05D006110 ORTHO05D007774 1.0e-66 258.8 214 63.6
CANSAT01G0073 Cannabis sativa HOM05D006110 ORTHO05D007774 1.1e-62 245.4 175 70.9
CDE05G0354 Ceratophyllum demersum HOM05D006110 ORTHO05D007774 7.7e-51 206.1 360 38.9
CANSAT01G1515 Cannabis sativa HOM05D006110 ORTHO05D007774 1.9e-49 201.4 108 84.3
Cc00_g06120 Coffea canephora HOM05D006110 ORTHO05D007774 6.1e-48 196.4 135 73.3
SEGI_24206 Sequoiadendron giganteum HOM05D006110 ORTHO05D007774 4.1e-44 183.7 187 57.2
CDE05G3545 Ceratophyllum demersum HOM05D006110 ORTHO05D007774 5.9e-43 179.9 139 66.2
SEGI_05467 Sequoiadendron giganteum HOM05D006110 ORTHO05D007774 3.5e-35 154.1 109 66.1
Oeu014625.1 Olea europaea HOM05D006110 ORTHO05D007774 1.3e-29 135.6 150 56.0
ClCG05G014240 Citrullus lanatus HOM05D006110 ORTHO05D007774 1.3e-26 125.6 180 47.2
Lj9C658T10 Lonicera japonica HOM05D006110 ORTHO05D007774 2.7e-24 117.9 67 76.1
Cre16.g695300 Chlamydomonas reinhardtii HOM05D006110 ORTHO05D007774 1.4e-23 115.5 267 32.2
Actinidia06221 Actinidia chinensis HOM05D006110 ORTHO05D007774 9.8e-22 109.4 164 47.0
QL04p021235 Quercus lobata HOM05D006110 ORTHO05D011410 2.0e-06 58.5 46 73.9


User provided reference genes

Program Settings