Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR190410 Cardamine hirsuta HOM05D005984 ORTHO05D007754 1.3e-211 739.6 408 100.0
Sp2g24000 Schrenkiella parvula HOM05D005984 ORTHO05D007754 2.8e-198 695.3 410 94.4
Thhalv10004338m.g Eutrema salsugineum HOM05D005984 ORTHO05D007754 6.3e-198 694.1 410 89.3
C07p44410 Brassica napus HOM05D005984 ORTHO05D007754 9.2e-197 690.3 409 89.7
BolC7t44963H Brassica oleracea HOM05D005984 ORTHO05D007754 2.7e-196 688.7 409 89.5
AT5G23120 Arabidopsis thaliana HOM05D005984 ORTHO05D007754 3.5e-196 688.3 408 89.0
AL6G34310 Arabidopsis lyrata HOM05D005984 ORTHO05D007754 4.5e-196 688.0 408 91.7
A03p46390 Brassica napus HOM05D005984 ORTHO05D007754 1.0e-195 686.8 409 90.2
BraA03t13765Z Brassica rapa HOM05D005984 ORTHO05D007754 1.0e-195 686.8 409 90.2
Carub.0006s2091 Capsella rubella HOM05D005984 ORTHO05D007754 6.6e-195 684.1 412 88.8
Aa31LG11G2610 Aethionema arabicum HOM05D005984 ORTHO05D007754 5.6e-194 681.0 414 89.9
THA.LOC104800911 Tarenaya hassleriana HOM05D005984 ORTHO05D007754 7.5e-175 617.5 410 81.2
Cpa.g.sc44.38 Carica papaya HOM05D005984 ORTHO05D007754 9.5e-170 600.5 420 72.1
Thecc.02G160200 Theobroma cacao HOM05D005984 ORTHO05D007754 1.1e-168 597.0 417 73.6
Glyma.11G100800 Glycine max HOM05D005984 ORTHO05D007754 4.0e-168 595.1 411 74.0
Gorai.005G210500 Gossypium raimondii HOM05D005984 ORTHO05D007754 8.9e-168 594.0 403 74.2
CiPaw.06G060100 Carya illinoinensis HOM05D005984 ORTHO05D007754 1.2e-167 593.6 417 73.6
Gohir.D02G187800 Gossypium hirsutum HOM05D005984 ORTHO05D007754 1.5e-167 593.2 403 74.2
Lj3g0024041 Lotus japonicus HOM05D005984 ORTHO05D007754 4.4e-167 591.7 378 82.0
VMungo1127G1047 Vigna mungo HOM05D005984 ORTHO05D007754 4.4e-167 591.7 355 80.6
CsaV3_7G030600 Cucumis sativus L. HOM05D005984 ORTHO05D007754 7.6e-167 590.9 402 75.1
CDE07G0658 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 2.2e-166 589.3 418 75.6
CANSAT56G2432 Cannabis sativa HOM05D005984 ORTHO05D007754 2.9e-166 589.0 412 76.9
ClCG09G004540 Citrullus lanatus HOM05D005984 ORTHO05D007754 3.8e-166 588.6 357 80.1
Glyma.12G026900 Glycine max HOM05D005984 ORTHO05D007754 4.9e-166 588.2 411 73.0
Gohir.A03G164600 Gossypium hirsutum HOM05D005984 ORTHO05D007754 6.4e-166 587.8 356 80.6
Phvul.011G029800 Phaseolus vulgaris HOM05D005984 ORTHO05D007754 6.4e-166 587.8 410 74.4
VMungo0647G2306 Vigna mungo HOM05D005984 ORTHO05D007754 6.4e-166 587.8 379 76.5
Lalb_Chr03g0024761 Lupinus albus HOM05D005984 ORTHO05D007754 1.1e-165 587.0 354 86.2
TPR.G32343 Trifolium pratense HOM05D005984 ORTHO05D007754 1.1e-165 587.0 355 80.3
Sed0006813 Sechium edule HOM05D005984 ORTHO05D007754 1.4e-165 586.6 358 79.9
GSVIVG01012045001 Vitis vinifera HOM05D005984 ORTHO05D007754 1.4e-165 586.6 422 70.9
TWI53G1952 Tripterygium wilfordii HOM05D005984 ORTHO05D007754 1.9e-165 586.3 359 80.2
ATR0618G114 Amborella trichopoda HOM05D005984 ORTHO05D007754 1.2e-164 583.6 416 71.9
Actinidia38413 Actinidia chinensis HOM05D005984 ORTHO05D007754 1.6e-164 583.2 353 79.6
Sed0023953 Sechium edule HOM05D005984 ORTHO05D007754 1.6e-164 583.2 411 76.4
MSTRG.431 Avicennia marina HOM05D005984 ORTHO05D007754 2.1e-164 582.8 411 71.8
MD13G1005900 Malus domestica HOM05D005984 ORTHO05D007754 2.1e-164 582.8 416 71.2
CSS0012805 Camellia sinensis var. sinensis HOM05D005984 ORTHO05D007754 2.7e-164 582.4 356 78.9
Actinidia13710 Actinidia chinensis HOM05D005984 ORTHO05D007754 4.6e-164 581.6 420 70.5
arahy.Tifrunner.gnm1.ann1.0C6YUW Arachis hypogaea HOM05D005984 ORTHO05D007754 6.0e-164 581.3 378 76.5
arahy.Tifrunner.gnm1.ann1.B6F48P Arachis hypogaea HOM05D005984 ORTHO05D007754 6.0e-164 581.3 378 76.5
Cfa008738 Carpinus fangiana HOM05D005984 ORTHO05D007754 7.8e-164 580.9 354 79.4
FAN12G1392 Fragaria x ananassa HOM05D005984 ORTHO05D007754 7.8e-164 580.9 411 77.1
Dinv11718 Davidia involucrata HOM05D005984 ORTHO05D007754 1.0e-163 580.5 356 84.8
Psat7g177360 Pisum sativum HOM05D005984 ORTHO05D007754 1.3e-163 580.1 355 79.2
FvH4_4g36890 Fragaria vesca HOM05D005984 ORTHO05D007754 2.3e-163 579.3 412 76.7
Medtr4g075040 Medicago truncatula HOM05D005984 ORTHO05D007754 3.0e-163 578.9 354 79.4
TAR629G1998 Trochodendron aralioides HOM05D005984 ORTHO05D007754 3.0e-163 578.9 418 70.3
RcHm_v2.0_Chr4g0446671 Rosa chinensis HOM05D005984 ORTHO05D007754 3.9e-163 578.6 424 75.5
Duzib052G0297 Durio zibethinus HOM05D005984 ORTHO05D007754 5.1e-163 578.2 418 72.5
Hma1.2p1_0122F.1_g057600 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 5.1e-163 578.2 361 78.9
Atru.chr11.1117 Acer truncatum HOM05D005984 ORTHO05D007754 6.6e-163 577.8 411 75.2
Sopen02g003530 Solanum pennellii HOM05D005984 ORTHO05D007754 6.6e-163 577.8 363 78.8
Prupe.1G347100 Prunus persica HOM05D005984 ORTHO05D007754 8.7e-163 577.4 358 83.2
Ca_19021_v3 Cicer arietinum L. HOM05D005984 ORTHO05D007754 1.1e-162 577.0 377 75.9
vmacro08597 Vaccinium macrocarpon HOM05D005984 ORTHO05D007754 1.5e-162 576.6 360 83.6
COL.COLO4_19602 Corchorus olitorius HOM05D005984 ORTHO05D007754 1.9e-162 576.2 459 68.0
MD16G1002000 Malus domestica HOM05D005984 ORTHO05D007754 1.9e-162 576.2 413 76.0
PGSC0003DMG400002324 Solanum tuberosum HOM05D005984 ORTHO05D007754 5.6e-162 574.7 360 78.6
Manes.04G064200 Manihot esculenta HOM05D005984 ORTHO05D007754 1.2e-161 573.5 352 83.8
AUR62017696 Chenopodium quinoa HOM05D005984 ORTHO05D007754 3.6e-161 572.0 354 84.2
Manes.11G108100 Manihot esculenta HOM05D005984 ORTHO05D007754 4.7e-161 571.6 352 84.4
PSO063G6567 Papaver somniferum HOM05D005984 ORTHO05D007754 4.7e-161 571.6 418 73.7
Zm00001eb271820 Zea mays HOM05D005984 ORTHO05D007754 4.7e-161 571.6 355 78.9
PSO782G0234 Papaver somniferum HOM05D005984 ORTHO05D007754 6.2e-161 571.2 416 72.8
Sabra07G0060100 Salix brachista HOM05D005984 ORTHO05D007754 6.2e-161 571.2 363 76.6
CAN.G157.24 Capsicum annuum HOM05D005984 ORTHO05D007754 8.1e-161 570.9 362 78.7
Potri.007G071300 Populus trichocarpa HOM05D005984 ORTHO05D007754 8.1e-161 570.9 361 77.0
unitig_8.g2892 Utricularia gibba HOM05D005984 ORTHO05D007754 1.4e-160 570.1 384 73.7
Ciclev10031672m.g Citrus clementina HOM05D005984 ORTHO05D007754 2.4e-160 569.3 415 74.0
FAN07G1379 Fragaria x ananassa HOM05D005984 ORTHO05D007754 1.2e-159 567.0 440 72.0
DCAR_002576 Daucus carota HOM05D005984 ORTHO05D007754 2.0e-159 566.2 358 77.1
ECA246G1868 Erigeron canadensis HOM05D005984 ORTHO05D007754 2.0e-159 566.2 359 81.9
HPP92_012878 Vanilla planifolia HOM05D005984 ORTHO05D007754 3.4e-159 565.5 357 78.2
PGR044G2022 Punica granatum HOM05D005984 ORTHO05D007754 7.6e-159 564.3 362 76.8
Cc11_g02280 Coffea canephora HOM05D005984 ORTHO05D007754 9.9e-159 563.9 329 81.8
Eucgr.J00865 Eucalyptus grandis HOM05D005984 ORTHO05D007754 2.2e-158 562.8 344 84.6
Lsat_1_v5_gn_3_35480 Lactuca sativa HOM05D005984 ORTHO05D007754 2.2e-158 562.8 360 80.8
Aqoxy3G04258 Aquilegia oxysepala HOM05D005984 ORTHO05D007754 2.9e-158 562.4 424 67.7
Os06g0729650 Oryza sativa ssp. japonica HOM05D005984 ORTHO05D007754 3.8e-158 562.0 362 76.0
SGA_v2.0_scaffold88G27230 Striga asiatica HOM05D005984 ORTHO05D007754 3.8e-158 562.0 366 79.8
Oeu026903.3 Olea europaea HOM05D005984 ORTHO05D007754 6.4e-158 561.2 426 72.5
AUR62015232 Chenopodium quinoa HOM05D005984 ORTHO05D007754 8.4e-158 560.8 327 87.8
AUR62015234 Chenopodium quinoa HOM05D005984 ORTHO05D007754 8.4e-158 560.8 327 87.8
Haze_11755 Corylus avellana HOM05D005984 ORTHO05D007754 8.4e-158 560.8 363 76.3
Lj3A850G95 Lonicera japonica HOM05D005984 ORTHO05D007754 8.4e-158 560.8 378 73.8
EL10Ac9g22946 Beta vulgaris HOM05D005984 ORTHO05D007754 3.2e-157 558.9 426 69.5
Hund08579 Selenicereus undatus HOM05D005984 ORTHO05D007754 4.6e-156 555.1 388 72.2
MELO3C023596.2 Cucumis melo HOM05D005984 ORTHO05D007754 3.3e-154 548.9 396 72.5
Migut.E00699 Erythranthe guttata HOM05D005984 ORTHO05D007754 5.6e-154 548.1 354 76.8
Nn3g18651 Nelumbo nucifera HOM05D005984 ORTHO05D007754 9.0e-152 540.8 398 68.8
Rhsim04G0167300 Rhododendron simsii HOM05D005984 ORTHO05D007754 9.0e-152 540.8 358 75.4
SalBow2G1456 Salvia bowleyana HOM05D005984 ORTHO05D007754 1.2e-151 540.4 500 63.0
Solyc02g014150.4 Solanum lycopersicum HOM05D005984 ORTHO05D007754 4.5e-151 538.5 340 78.5
HanXRQChr17g0544921 Helianthus annuus HOM05D005984 ORTHO05D007754 2.1e-148 529.6 337 82.2
HanXRQChr06g0171511 Helianthus annuus HOM05D005984 ORTHO05D007754 7.9e-148 527.7 335 82.7
QL03p045967 Quercus lobata HOM05D005984 ORTHO05D007754 3.0e-147 525.8 457 60.8
Sc10g0006780 Simmondsia chinensis HOM05D005984 ORTHO05D007754 5.1e-147 525.0 361 72.9
SMO347G0352 Selaginella moellendorffii HOM05D005984 ORTHO05D007754 1.1e-146 523.9 352 71.6
Pp3c15_7930 Physcomitrium patens HOM05D005984 ORTHO05D007754 1.3e-145 520.4 357 77.9
Ah.01g001560 Amaranthus hybridus HOM05D005984 ORTHO05D007754 1.6e-145 520.0 356 74.4
Nitab4.5_0000133g0050 Nicotiana tabacum HOM05D005984 ORTHO05D007754 1.5e-143 513.5 536 58.0
Pp3c9_10350 Physcomitrium patens HOM05D005984 ORTHO05D007754 2.6e-143 512.7 357 76.8
CDE04G0799 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 6.0e-140 501.5 418 68.4
Nitab4.5_0006277g0020 Nicotiana tabacum HOM05D005984 ORTHO05D007754 3.3e-138 495.7 568 53.9
Mapoly0020s0149 Marchantia polymorpha HOM05D005984 ORTHO05D007754 1.3e-137 493.8 356 68.3
Peaxi162Scf00363g00317 Petunia axillaris HOM05D005984 ORTHO05D007754 2.5e-133 479.6 485 59.4
CBR_g11122 Chara braunii HOM05D005984 ORTHO05D007754 2.7e-124 449.5 393 64.1
AagrBONN_evm.TU.Sc2ySwM_369.365 Anthoceros agrestis HOM05D005984 ORTHO05D007754 2.0e-114 416.8 331 68.3
FAN17G0887 Fragaria x ananassa HOM05D005984 ORTHO05D007754 1.1e-112 411.0 439 58.5
MCO05G498 Micromonas commoda HOM05D005984 ORTHO05D007754 1.6e-108 397.1 342 61.4
Dinv01185 Davidia involucrata HOM05D005984 ORTHO05D007754 2.6e-106 389.8 203 90.6
Cre06.g273700 Chlamydomonas reinhardtii HOM05D005984 ORTHO05D007754 4.8e-105 385.6 360 60.8
Hma1.2p1_0122F.1_g057590 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 9.1e-96 354.8 209 81.3
PRCOL_00000217 Prasinoderma coloniale HOM05D005984 ORTHO05D007754 8.6e-78 295.0 298 56.4
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 8.6e-62 241.9 351 43.9
MD15G1106700 Malus domestica HOM05D005984 ORTHO05D007754 6.4e-57 225.7 114 90.4
C09p07860 Brassica napus HOM05D005984 ORTHO05D007754 8.6e-54 215.3 181 66.3
BcaB04g19886 Brassica carinata HOM05D005984 ORTHO05D007754 1.1e-45 188.3 211 55.0
SEGI_34707 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 1.8e-43 181.0 122 72.1
MD00G1043400 Malus domestica HOM05D005984 ORTHO05D007754 4.4e-42 176.4 111 76.6
HanXRQChr10g0318441 Helianthus annuus HOM05D005984 ORTHO05D007754 4.6e-31 139.8 69 89.9
AUR62024854 Chenopodium quinoa HOM05D005984 ORTHO05D007754 6.9e-27 125.9 73 84.9
arahy.Tifrunner.gnm1.ann1.25R2K9 Arachis hypogaea HOM05D005984 ORTHO05D014444 2.0e-26 124.4 85 70.6
arahy.Tifrunner.gnm1.ann1.B9R6EW Arachis hypogaea HOM05D005984 ORTHO05D014444 2.9e-25 120.6 84 69.0
C09p07870 Brassica napus HOM05D005984 ORTHO05D042888 3.7e-20 103.6 98 59.2
SEGI_27749 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 4.1e-19 100.1 53 83.0
MBI03_g15323_MAGBIO Magnolia biondii HOM05D002934 ORTHO05D003937 1.1e-16 92.0 57 77.2
BolC9t53702H Brassica oleracea HOM05D005984 ORTHO05D042888 4.3e-13 80.1 62 67.7
Zm00001eb227280 Zea mays HOM05D005984 ORTHO05D007754 2.2e-12 77.8 62 64.5
Glyma.01G000174 Glycine max HOM05D036214 ORTHO05D007754 4.1e-11 73.6 43 79.1
Glyma.06G237300 Glycine max HOM05D005984 ORTHO05D007754 4.5e-10 70.1 70 55.7
Pp3c24_8290 Physcomitrium patens HOM05D013586 ORTHO05D011470 1.7e-09 68.2 38 76.3
AUR62043071 Chenopodium quinoa HOM05D003339 ORTHO05D003847 3.6e-07 60.5 60 51.7
SGA_v2.0_scaffold57G20111 Striga asiatica HOM05D005984 ORTHO05D402503 6.1e-07 59.7 44 59.1


User provided reference genes

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