Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR145370 Cardamine hirsuta HOM05D001988 ORTHO05D004985 6.9e-265 916.8 465 100.0
AL5G12570 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 5.2e-196 688.0 476 75.8
Carub.0005s0183 Capsella rubella HOM05D001988 ORTHO05D004985 4.5e-192 674.9 473 75.1
AT2G02955 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 3.9e-183 645.2 462 72.7
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 1.6e-181 639.8 473 70.6
Thhalv10027666m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 1.0e-159 567.4 463 67.0
Sp7g05500 Schrenkiella parvula HOM05D001988 ORTHO05D004985 1.4e-156 557.0 478 64.2
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 4.8e-149 531.9 463 62.6
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 6.2e-149 531.6 463 62.2
BolC8t52776H Brassica oleracea HOM05D001988 ORTHO05D004985 8.1e-149 531.2 463 62.6
C08p52490 Brassica napus HOM05D001988 ORTHO05D004985 2.4e-148 529.6 464 62.7
AL6G52060 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 5.3e-148 528.5 442 66.3
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 1.5e-147 526.9 464 62.5
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 1.3e-146 523.9 418 65.6
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 1.6e-128 463.8 478 54.6
Thhalv10004418m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 2.5e-105 386.7 276 73.6
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 3.2e-105 386.3 494 46.4
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 3.2e-105 386.3 497 46.1
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 9.4e-105 384.8 503 46.9
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 4.7e-104 382.5 482 47.3
CiPaw.05G135300 Carya illinoinensis HOM05D001988 ORTHO05D004985 2.0e-102 377.1 512 44.5
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 9.7e-102 374.8 506 44.9
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 1.3e-101 374.4 507 46.2
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 2.8e-101 373.2 521 43.2
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 8.2e-101 371.7 454 46.5
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 9.1e-100 368.2 487 45.8
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 1.6e-99 367.5 502 43.6
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 2.6e-99 366.7 502 44.0
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 2.6e-99 366.7 502 44.0
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 3.5e-99 366.3 476 45.6
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 2.9e-98 363.2 501 43.1
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 5.0e-98 362.5 501 43.1
FAN25G3456 Fragaria x ananassa HOM05D001988 ORTHO05D004985 1.5e-97 360.9 501 43.9
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 1.5e-97 360.9 501 43.9
Sabra10G0129300 Salix brachista HOM05D001988 ORTHO05D004985 1.9e-97 360.5 483 44.7
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 1.2e-96 357.8 492 42.7
Oeu037938.2 Olea europaea HOM05D001988 ORTHO05D004985 4.7e-96 355.9 496 43.1
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 1.4e-95 354.4 493 43.0
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 1.4e-95 354.4 492 42.7
TAR629G1399 Trochodendron aralioides HOM05D001988 ORTHO05D004985 1.4e-95 354.4 509 42.8
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 1.5e-94 350.9 482 42.5
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 3.7e-93 346.3 488 44.1
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 1.4e-92 344.4 497 42.7
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 4.1e-92 342.8 464 43.8
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 4.1e-92 342.8 492 41.9
vmacro01260 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 4.1e-92 342.8 490 43.3
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 1.2e-91 341.3 504 42.5
CsaV3_2G009530 Cucumis sativus L. HOM05D001988 ORTHO05D004985 2.0e-91 340.5 490 43.1
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 2.0e-91 340.5 492 43.3
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 1.3e-90 337.8 484 41.7
EL10Ac6g13205 Beta vulgaris HOM05D001988 ORTHO05D004985 2.9e-90 336.7 493 42.8
HanXRQChr09g0255131 Helianthus annuus HOM05D001988 ORTHO05D004985 3.8e-90 336.3 473 42.5
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 1.9e-89 334.0 503 41.9
AUR62005788 Chenopodium quinoa HOM05D001988 ORTHO05D004985 4.2e-89 332.8 482 42.1
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 1.2e-88 331.3 474 42.4
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 1.6e-88 330.9 495 40.8
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 1.6e-88 330.9 497 41.4
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 1.6e-88 330.9 507 41.2
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 2.1e-88 330.5 610 37.2
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 2.1e-88 330.5 508 40.2
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 2.1e-88 330.5 510 40.0
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 2.1e-88 330.5 510 40.0
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 6.1e-88 328.9 490 42.9
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 1.0e-87 328.2 499 40.7
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 1.4e-87 327.8 499 41.1
Eucgr.B03444 Eucalyptus grandis HOM05D001988 ORTHO05D004985 1.4e-87 327.8 461 45.3
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 1.4e-87 327.8 474 43.5
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 3.0e-87 326.6 468 40.6
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 3.0e-87 326.6 517 41.0
Ca_20931_v3 Cicer arietinum L. HOM05D001988 ORTHO05D004985 4.0e-87 326.2 499 40.1
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 6.8e-87 325.5 502 40.4
Cc09_g03970 Coffea canephora HOM05D001988 ORTHO05D004985 1.5e-86 324.3 482 41.5
EL10Ac9g22126 Beta vulgaris HOM05D001988 ORTHO05D004985 7.5e-86 322.0 536 40.5
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 3.7e-85 319.7 488 40.4
SGA_v2.0_scaffold58G20462 Striga asiatica HOM05D001988 ORTHO05D004985 6.3e-85 318.9 467 42.0
Lalb_Chr14g0368981 Lupinus albus HOM05D001988 ORTHO05D004985 1.1e-84 318.2 465 41.9
AUR62028773 Chenopodium quinoa HOM05D001988 ORTHO05D004985 1.8e-84 317.4 465 41.7
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 7.0e-84 315.5 497 39.4
Aqoxy1G01101 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 9.1e-84 315.1 492 40.4
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 9.1e-84 315.1 464 40.5
Peaxi162Scf00217g00713 Petunia axillaris HOM05D001988 ORTHO05D004985 9.1e-84 315.1 492 41.3
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 9.1e-84 315.1 455 43.1
Ah.05g179340 Amaranthus hybridus HOM05D001988 ORTHO05D004985 1.6e-83 314.3 500 40.6
DCAR_007151 Daucus carota HOM05D001988 ORTHO05D004985 1.6e-83 314.3 446 41.3
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 2.7e-83 313.5 493 39.6
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 4.5e-83 312.8 468 41.5
Migut.F02100 Erythranthe guttata HOM05D001988 ORTHO05D004985 3.8e-82 309.7 487 40.2
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 5.0e-82 309.3 466 40.3
SalBow1G3615 Salvia bowleyana HOM05D001988 ORTHO05D004985 6.5e-82 308.9 450 41.6
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 1.1e-81 308.1 469 40.9
TPR.G16225 Trifolium pratense HOM05D001988 ORTHO05D004985 1.1e-81 308.1 449 41.2
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 1.5e-81 307.8 476 41.2
Sopen09g001990 Solanum pennellii HOM05D001988 ORTHO05D004985 2.5e-81 307.0 475 41.9
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 2.5e-81 307.0 457 42.7
Solyc09g007120.4 Solanum lycopersicum HOM05D001988 ORTHO05D004985 7.2e-81 305.4 475 41.5
TPR.G27077 Trifolium pratense HOM05D001988 ORTHO05D004985 1.2e-80 304.7 465 39.6
Migut.I00421 Erythranthe guttata HOM05D001988 ORTHO05D004985 4.7e-80 302.8 459 39.7
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 1.2e-78 298.1 476 40.3
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 7.5e-78 295.4 478 40.0
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 1.3e-77 294.7 482 40.9
Nn4g23157 Nelumbo nucifera HOM05D001988 ORTHO05D004985 2.2e-77 293.9 477 40.0
Potri.010G169500 Populus trichocarpa HOM05D001988 ORTHO05D004985 6.3e-77 292.4 409 43.5
MBI19_g09828_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D004985 7.0e-76 288.9 497 38.2
CDE07G0941 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 5.9e-75 285.8 467 39.6
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 5.9e-75 285.8 466 38.8
PSO017G3571 Papaver somniferum HOM05D001988 ORTHO05D004985 8.0e-72 275.4 448 38.6
HPP92_021577 Vanilla planifolia HOM05D001988 ORTHO05D004985 5.7e-70 269.2 469 36.7
unitig_60.g25620 Utricularia gibba HOM05D001988 ORTHO05D004985 1.7e-69 267.7 445 37.1
Zm00001eb284870 Zea mays HOM05D001988 ORTHO05D004985 3.7e-69 266.5 440 37.5
PSO063G4641 Papaver somniferum HOM05D001988 ORTHO05D004985 1.8e-68 264.2 448 37.5
Medtr5g067430 Medicago truncatula HOM05D001988 ORTHO05D004985 7.3e-65 252.3 455 36.3
Oeu007681.1 Olea europaea HOM05D001988 ORTHO05D004985 2.7e-59 233.8 292 44.9
Atru.chr11.1785 Acer truncatum HOM05D001988 ORTHO05D004985 2.3e-58 230.7 368 41.6
RcHm_v2.0_Chr5g0048641 Rosa chinensis HOM05D001988 ORTHO05D004985 1.9e-57 227.6 299 45.5
RcHm_v2.0_Chr7g0220021 Rosa chinensis HOM05D001988 ORTHO05D004985 5.6e-57 226.1 316 43.7
Hund25598 Selenicereus undatus HOM05D001988 ORTHO05D004985 4.7e-56 223.0 374 40.6
Dinv16646 Davidia involucrata HOM05D001988 ORTHO05D004985 1.5e-54 218.0 191 56.0
SEGI_17598 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 2.6e-54 217.2 494 33.2
Hma1.2p1_0265F.1_g106750 Hydrangea macrophylla HOM05D001988 ORTHO05D004985 3.2e-52 210.3 181 56.4
SEGI_28471 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 4.1e-52 209.9 494 30.8
AUR62008859 Chenopodium quinoa HOM05D001988 ORTHO05D004985 3.5e-51 206.8 247 46.6
CARHR212720 Cardamine hirsuta HOM05D001988 ORTHO05D004985 4.6e-51 206.5 307 44.0
ATR0782G208 Amborella trichopoda HOM05D001988 ORTHO05D004985 2.0e-46 191.0 392 36.0
PGSC0003DMG400002020 Solanum tuberosum HOM05D001988 ORTHO05D004985 4.1e-44 183.3 164 56.1
Pp3c9_8400 Physcomitrium patens HOM05D001988 ORTHO05D004985 1.9e-41 174.5 433 29.3
COL.COLO4_23013 Corchorus olitorius HOM05D001988 ORTHO05D004985 4.3e-41 173.3 333 36.9
Sp2g13990 Schrenkiella parvula HOM05D001988 ORTHO05D004985 2.8e-40 170.6 231 47.6
arahy.Tifrunner.gnm1.ann1.N3HM5N Arachis hypogaea HOM05D001988 ORTHO05D004985 5.8e-38 162.9 268 36.6
AL7G47160 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 7.1e-36 156.0 215 49.3
AagrBONN_evm.TU.Sc2ySwM_362.1334 Anthoceros agrestis HOM05D001988 ORTHO05D004985 1.7e-34 151.4 463 27.9
RcHm_v2.0_Chr7g0220011 Rosa chinensis HOM05D001988 ORTHO05D004985 2.1e-32 144.4 95 66.3
PSO513G0179 Papaver somniferum HOM05D001988 ORTHO05D004985 1.8e-31 141.4 461 27.8
Aqoxy5G02833 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 4.0e-31 140.2 228 39.0
Mapoly0075s0087 Marchantia polymorpha HOM05D001988 ORTHO05D004985 4.0e-31 140.2 543 25.0
RcHm_v2.0_Chr5g0048631 Rosa chinensis HOM05D001988 ORTHO05D004985 5.8e-30 136.3 95 65.3
Peaxi162Scf00342g00711 Petunia axillaris HOM05D001988 ORTHO05D004985 2.5e-25 120.9 448 28.1
Aqoxy5G02834 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 3.4e-22 110.5 118 49.2
CARHR289080 Cardamine hirsuta HOM05D001988 ORTHO05D004985 8.4e-21 105.9 65 81.5
AagrBONN_evm.TU.Sc2ySwM_362.1335 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.1e-19 101.3 393 26.0
BcaC06g34029 Brassica carinata HOM05D001988 ORTHO05D004985 6.9e-15 86.3 75 57.3
AT4G01340 Arabidopsis thaliana HOM05D001988 ORTHO05D019756 3.8e-13 80.5 60 65.0
AagrBONN_evm.TU.Sc2ySwM_117.2968 Anthoceros agrestis HOM05D001988 ORTHO05D004985 3.5e-11 73.9 95 37.9
Atru.chr11.1786 Acer truncatum HOM05D001988 ORTHO05D004985 4.6e-11 73.6 62 50.0
AagrBONN_evm.TU.Sc2ySwM_369.75 Anthoceros agrestis HOM05D001988 ORTHO05D004985 6.7e-10 69.7 90 36.7
AT4G01335 Arabidopsis thaliana HOM05D001988 ORTHO05D019756 1.5e-09 68.6 111 46.8
SMO239G0039 Selaginella moellendorffii HOM05D001988 ORTHO05D004985 1.4e-07 62.0 54 50.0
CDE06G2098 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 2.4e-07 61.2 95 40.0
arahy.Tifrunner.gnm1.ann1.ZE0ACQ Arachis hypogaea HOM05D000603 ORTHO05D008734 5.3e-07 60.1 63 44.4
CBR_g30180 Chara braunii HOM05D001988 ORTHO05D004985 1.0e-05 55.8 54 44.4


User provided reference genes

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