Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR112000 Cardamine hirsuta HOM05D005339 ORTHO05D006561 7.0e-82 307.4 171 100.0
AL4G10240 Arabidopsis lyrata HOM05D005339 ORTHO05D006561 1.7e-67 259.6 165 88.5
Carub.0004s0017 Capsella rubella HOM05D005339 ORTHO05D006561 2.2e-67 259.2 165 89.1
AT2G21150 Arabidopsis thaliana HOM05D005339 ORTHO05D006561 3.2e-66 255.4 165 87.9
Thhalv10000232m.g Eutrema salsugineum HOM05D005339 ORTHO05D006561 8.0e-62 240.7 165 84.2
Sp4g00300 Schrenkiella parvula HOM05D005339 ORTHO05D006561 5.2e-61 238.0 165 83.6
Aa31LG7G15530 Aethionema arabicum HOM05D005339 ORTHO05D006561 1.6e-57 226.5 165 80.6
C04p50370 Brassica napus HOM05D005339 ORTHO05D006561 3.5e-57 225.3 165 79.4
BolC4t26635H Brassica oleracea HOM05D005339 ORTHO05D006561 3.5e-57 225.3 165 79.4
BcaB08g34965 Brassica carinata HOM05D005339 ORTHO05D006561 1.7e-56 223.0 165 80.0
BraA04t17225Z Brassica rapa HOM05D005339 ORTHO05D006561 1.9e-55 219.5 170 77.6
A04p15920 Brassica napus HOM05D005339 ORTHO05D006561 4.7e-54 214.9 165 78.2
BraA09t41237Z Brassica rapa HOM05D005339 ORTHO05D006561 6.2e-54 214.5 165 78.2
A09p58500 Brassica napus HOM05D005339 ORTHO05D006561 1.1e-53 213.8 165 77.6
BcaC07g41172 Brassica carinata HOM05D005339 ORTHO05D006561 3.1e-53 212.2 165 76.4
C08p41800 Brassica napus HOM05D005339 ORTHO05D006561 3.1e-53 212.2 165 76.4
BolC8t51743H Brassica oleracea HOM05D005339 ORTHO05D006561 5.2e-53 211.5 165 76.4
Ciclev10028803m.g Citrus clementina HOM05D005339 ORTHO05D006561 5.2e-53 211.5 165 75.2
Nn7g36850 Nelumbo nucifera HOM05D005339 ORTHO05D006561 5.4e-50 201.4 165 70.3
CDE02G2588 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 2.1e-49 199.5 165 68.5
THA.LOC104807785 Tarenaya hassleriana HOM05D005339 ORTHO05D006561 3.5e-49 198.7 165 73.3
Prupe.7G010600 Prunus persica HOM05D005339 ORTHO05D006561 7.8e-49 197.6 165 71.5
CiPaw.06G125300 Carya illinoinensis HOM05D005339 ORTHO05D006561 3.9e-48 195.3 165 70.9
Actinidia20485 Actinidia chinensis HOM05D005339 ORTHO05D006561 1.5e-47 193.4 165 70.3
Eucgr.I01375 Eucalyptus grandis HOM05D005339 ORTHO05D006561 1.9e-47 193.0 166 70.5
Sabra04G0112800 Salix brachista HOM05D005339 ORTHO05D006561 5.6e-47 191.4 165 70.9
Hund06405 Selenicereus undatus HOM05D005339 ORTHO05D006561 5.6e-47 191.4 165 70.3
CSS0049457 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 7.3e-47 191.0 166 70.5
Potri.004G168400 Populus trichocarpa HOM05D005339 ORTHO05D006561 7.3e-47 191.0 165 70.9
Manes.11G090000 Manihot esculenta HOM05D005339 ORTHO05D006561 2.1e-46 189.5 165 69.7
Cfa005184 Carpinus fangiana HOM05D005339 ORTHO05D006561 2.8e-46 189.1 165 69.7
GSVIVG01024083001 Vitis vinifera HOM05D005339 ORTHO05D006561 3.6e-46 188.7 165 69.7
Gohir.A03G203200 Gossypium hirsutum HOM05D005339 ORTHO05D006561 6.2e-46 188.0 165 68.5
Gorai.005G252300 Gossypium raimondii HOM05D005339 ORTHO05D006561 6.2e-46 188.0 165 68.5
MD14G1006100 Malus domestica HOM05D005339 ORTHO05D006561 6.2e-46 188.0 165 66.7
EL10Ac9g21438 Beta vulgaris HOM05D005339 ORTHO05D006561 8.1e-46 187.6 165 67.3
Duzib132G0613 Durio zibethinus HOM05D005339 ORTHO05D006561 1.1e-45 187.2 172 68.0
RcHm_v2.0_Chr2g0122771 Rosa chinensis HOM05D005339 ORTHO05D006561 1.1e-45 187.2 165 67.9
ClCG02G011380 Citrullus lanatus HOM05D005339 ORTHO05D006561 1.8e-45 186.4 165 70.3
MELO3C020783.2 Cucumis melo HOM05D005339 ORTHO05D006561 1.8e-45 186.4 165 70.3
CsaV3_2G015710 Cucumis sativus L. HOM05D005339 ORTHO05D006561 1.8e-45 186.4 165 70.3
Potri.009G129700 Populus trichocarpa HOM05D005339 ORTHO05D006561 1.8e-45 186.4 165 69.7
Sed0019675 Sechium edule HOM05D005339 ORTHO05D006561 1.8e-45 186.4 165 70.3
Rhsim11G0187800 Rhododendron simsii HOM05D005339 ORTHO05D006561 2.4e-45 186.0 165 68.5
ATR0810G182 Amborella trichopoda HOM05D005339 ORTHO05D006561 3.1e-45 185.7 165 67.3
Manes.04G078200 Manihot esculenta HOM05D005339 ORTHO05D006561 3.1e-45 185.7 165 69.1
Aqoxy5G01796 Aquilegia oxysepala HOM05D005339 ORTHO05D006561 4.0e-45 185.3 165 67.3
CiPaw.05G077200 Carya illinoinensis HOM05D005339 ORTHO05D006561 4.0e-45 185.3 165 69.1
PSO700G0269 Papaver somniferum HOM05D005339 ORTHO05D006561 4.0e-45 185.3 166 68.1
TAR376G0223 Trochodendron aralioides HOM05D005339 ORTHO05D006561 4.0e-45 185.3 165 68.5
AUR62010093 Chenopodium quinoa HOM05D005339 ORTHO05D006561 5.2e-45 184.9 165 67.3
Thecc.02G066900 Theobroma cacao HOM05D005339 ORTHO05D006561 5.2e-45 184.9 166 68.7
CANSAT25G3263 Cannabis sativa HOM05D005339 ORTHO05D006561 6.8e-45 184.5 165 69.1
AUR62013089 Chenopodium quinoa HOM05D005339 ORTHO05D006561 6.8e-45 184.5 165 66.7
Gohir.D02G224500 Gossypium hirsutum HOM05D005339 ORTHO05D006561 8.9e-45 184.1 165 67.3
Lalb_Chr11g0072011 Lupinus albus HOM05D005339 ORTHO05D006561 8.9e-45 184.1 165 68.5
Glyma.08G042200 Glycine max HOM05D005339 ORTHO05D006561 3.4e-44 182.2 167 67.7
MD12G1008800 Malus domestica HOM05D005339 ORTHO05D006561 3.4e-44 182.2 165 65.5
QL11p047539 Quercus lobata HOM05D005339 ORTHO05D006561 5.8e-44 181.4 165 67.3
QL11p047573 Quercus lobata HOM05D005339 ORTHO05D006561 5.8e-44 181.4 165 67.3
CDE04G0258 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 7.6e-44 181.0 165 66.7
Glyma.05G234700 Glycine max HOM05D005339 ORTHO05D006561 9.9e-44 180.6 165 66.7
PGR142G1539 Punica granatum HOM05D005339 ORTHO05D006561 1.3e-43 180.3 165 67.9
PSO170G1371 Papaver somniferum HOM05D005339 ORTHO05D006561 1.7e-43 179.9 166 66.9
Mapoly0015s0022 Marchantia polymorpha HOM05D005339 ORTHO05D006561 6.4e-43 177.9 166 66.3
FAN28G0542 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.1e-42 177.2 165 65.5
FAN28G2786 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.1e-42 177.2 165 65.5
arahy.Tifrunner.gnm1.ann1.RMHT0B Arachis hypogaea HOM05D005339 ORTHO05D006561 1.4e-42 176.8 165 67.3
arahy.Tifrunner.gnm1.ann1.UV505Z Arachis hypogaea HOM05D005339 ORTHO05D006561 1.4e-42 176.8 165 67.3
Lj4g0026543 Lotus japonicus HOM05D005339 ORTHO05D006561 1.9e-42 176.4 165 67.3
FAN23G1071 Fragaria x ananassa HOM05D005339 ORTHO05D006561 3.2e-42 175.6 165 64.8
DCAR_022955 Daucus carota HOM05D005339 ORTHO05D006561 4.2e-42 175.3 165 64.8
DCAR_022956 Daucus carota HOM05D005339 ORTHO05D006561 4.2e-42 175.3 165 64.8
Lalb_Chr23g0275171 Lupinus albus HOM05D005339 ORTHO05D006561 4.2e-42 175.3 165 66.7
Sabra09G0099200 Salix brachista HOM05D005339 ORTHO05D006561 4.2e-42 175.3 189 60.8
PGSC0003DMG400001633 Solanum tuberosum HOM05D005339 ORTHO05D006561 4.2e-42 175.3 165 65.5
Migut.B00167 Erythranthe guttata HOM05D005339 ORTHO05D006561 1.6e-41 173.3 167 65.9
vmacro02249 Vaccinium macrocarpon HOM05D005339 ORTHO05D006561 2.1e-41 172.9 165 66.1
Zm00001eb103630 Zea mays HOM05D005339 ORTHO05D006561 3.5e-41 172.2 166 65.7
Psat7g008680 Pisum sativum HOM05D005339 ORTHO05D006561 4.6e-41 171.8 172 64.0
Cc11_g02780 Coffea canephora HOM05D005339 ORTHO05D006561 7.8e-41 171.0 166 65.7
ECA246G3996 Erigeron canadensis HOM05D005339 ORTHO05D006561 1.7e-40 169.9 167 66.5
Hma1.2p1_0032F.1_g019680 Hydrangea macrophylla HOM05D005339 ORTHO05D006561 3.9e-40 168.7 165 62.4
Medtr8g105120 Medicago truncatula HOM05D005339 ORTHO05D006561 3.9e-40 168.7 168 63.7
Ca_17265_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 5.1e-40 168.3 169 62.7
Ca_17286_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 5.1e-40 168.3 169 62.7
Pp3c2_11550 Physcomitrium patens HOM05D005339 ORTHO05D006561 5.1e-40 168.3 172 59.9
Os09g0535300 Oryza sativa ssp. japonica HOM05D005339 ORTHO05D006561 8.7e-40 167.5 166 63.9
SGA_v2.0_scaffold58G20457 Striga asiatica HOM05D005339 ORTHO05D006561 8.7e-40 167.5 168 64.9
Cpa.g.sc37.191 Carica papaya HOM05D005339 ORTHO05D006561 2.5e-39 166.0 213 53.1
MBI19_g09243_MAGBIO Magnolia biondii HOM05D005339 ORTHO05D006561 2.5e-39 166.0 193 57.0
TWI31G0803 Tripterygium wilfordii HOM05D005339 ORTHO05D006561 2.5e-39 166.0 165 66.1
Pp3c17_13560 Physcomitrium patens HOM05D005339 ORTHO05D006561 5.6e-39 164.9 169 59.8
COL.COLO4_17257 Corchorus olitorius HOM05D005339 ORTHO05D003646 9.6e-39 164.1 148 69.6
Atru.chr5.3227 Acer truncatum HOM05D005339 ORTHO05D006561 1.6e-38 163.3 165 65.5
HanXRQChr15g0478851 Helianthus annuus HOM05D005339 ORTHO05D006561 1.6e-38 163.3 165 65.5
SEGI_00782 Sequoiadendron giganteum HOM05D005339 ORTHO05D006561 2.8e-38 162.5 166 63.3
CAN.G588.26 Capsicum annuum HOM05D005339 ORTHO05D006561 3.6e-38 162.2 165 61.8
Phvul.002G320300 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 3.6e-38 162.2 168 63.1
FvH4_1g25110 Fragaria vesca HOM05D005339 ORTHO05D006561 1.4e-37 160.2 165 62.4
Nitab4.5_0000283g0140 Nicotiana tabacum HOM05D005339 ORTHO05D006561 3.1e-37 159.1 165 62.4
Nitab4.5_0000980g0240 Nicotiana tabacum HOM05D005339 ORTHO05D006561 3.1e-37 159.1 165 62.4
Solyc01g111140.3 Solanum lycopersicum HOM05D005339 ORTHO05D006561 3.1e-37 159.1 165 62.4
Sopen01g053200 Solanum pennellii HOM05D005339 ORTHO05D006561 3.1e-37 159.1 165 62.4
FAN19G3054 Fragaria x ananassa HOM05D005339 ORTHO05D006561 4.0e-37 158.7 165 61.8
Peaxi162Scf00362g01036 Petunia axillaris HOM05D005339 ORTHO05D006561 4.0e-37 158.7 167 62.9
unitig_744.g24266 Utricularia gibba HOM05D005339 ORTHO05D006561 6.9e-37 157.9 172 61.0
SMO117G0089 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 1.5e-36 156.8 166 59.0
AagrBONN_evm.TU.Sc2ySwM_344.4430 Anthoceros agrestis HOM05D005339 ORTHO05D006561 2.6e-36 156.0 166 59.6
Lsat_1_v5_gn_3_45301 Lactuca sativa HOM05D005339 ORTHO05D006561 7.6e-36 154.5 166 61.4
Actinidia00595 Actinidia chinensis HOM05D005339 ORTHO05D006561 9.9e-36 154.1 98 84.7
VMungo0251G0038 Vigna mungo HOM05D005339 ORTHO05D006561 9.9e-36 154.1 168 61.9
Ah.01g009160 Amaranthus hybridus HOM05D005339 ORTHO05D006561 3.8e-35 152.1 165 61.8
SalBow6G1349 Salvia bowleyana HOM05D005339 ORTHO05D006561 9.3e-34 147.5 169 58.6
LjContig00310g0009118 Lotus japonicus HOM05D005339 ORTHO05D006561 2.7e-33 146.0 165 58.8
VMungo0251G1261 Vigna mungo HOM05D005339 ORTHO05D006561 1.0e-32 144.1 90 84.4
Oeu055639.3 Olea europaea HOM05D005339 ORTHO05D006561 1.5e-31 140.2 166 59.0
Dinv41975 Davidia involucrata HOM05D005339 ORTHO05D006561 1.9e-31 139.8 167 59.3
Lj9C389T6 Lonicera japonica HOM05D005339 ORTHO05D006561 2.8e-30 136.0 207 49.8
Haze_02197 Corylus avellana HOM05D005339 ORTHO05D006561 1.3e-27 127.1 165 49.1
HPP92_028582 Vanilla planifolia HOM05D005339 ORTHO05D006561 3.8e-27 125.6 166 53.6
Phvul.002G320400 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 1.9e-18 96.7 64 79.7
MCO15G465 Micromonas commoda HOM05D005339 ORTHO05D006561 4.6e-17 92.0 162 41.4
Cre07.g341300 Chlamydomonas reinhardtii HOM05D005339 ORTHO05D006561 5.1e-16 88.6 90 47.8
TPR.G17076 Trifolium pratense HOM05D005339 ORTHO05D006561 2.5e-15 86.3 112 54.5
CSS0035622 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 2.0e-12 76.6 108 54.6
Sc08g0003210 Simmondsia chinensis HOM05D005339 ORTHO05D006561 3.4e-12 75.9 61 63.9
FAN26G3137 Fragaria x ananassa HOM05D005339 ORTHO05D006561 5.0e-11 72.0 165 40.0


User provided reference genes

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