Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR093160 Cardamine hirsuta HOM05D002170 ORTHO05D007478 4.5e-247 857.4 428 100.0
Carub.0003s1752 Capsella rubella HOM05D002170 ORTHO05D007478 9.2e-240 833.2 430 96.5
AT3G17810 Arabidopsis thaliana HOM05D002170 ORTHO05D007478 4.6e-239 830.9 428 96.7
AL3G30970 Arabidopsis lyrata HOM05D002170 ORTHO05D007478 8.6e-238 826.6 428 95.8
Thhalv10020777m.g Eutrema salsugineum HOM05D002170 ORTHO05D007478 6.8e-235 817.0 432 93.8
Sp3g15930 Schrenkiella parvula HOM05D002170 ORTHO05D007478 2.0e-234 815.5 429 94.4
C05p48530 Brassica napus HOM05D002170 ORTHO05D007478 1.2e-231 806.2 432 92.1
BolC5t33589H Brassica oleracea HOM05D002170 ORTHO05D007478 2.3e-230 802.0 432 91.7
BcaNung05883 Brassica carinata HOM05D002170 ORTHO05D007478 9.5e-229 796.6 433 91.7
BcaC09g48741 Brassica carinata HOM05D002170 ORTHO05D007478 1.2e-228 796.2 428 92.1
BraA05t22032Z Brassica rapa HOM05D002170 ORTHO05D007478 1.2e-228 796.2 444 89.9
BcaB04g20814 Brassica carinata HOM05D002170 ORTHO05D007478 4.7e-228 794.3 431 91.9
C01p46400 Brassica napus HOM05D002170 ORTHO05D007478 6.2e-228 793.9 428 91.8
A01p36570 Brassica napus HOM05D002170 ORTHO05D007478 8.9e-227 790.0 428 91.4
BolC1t04600H Brassica oleracea HOM05D002170 ORTHO05D007478 3.4e-226 788.1 428 91.4
BcaB04g18965 Brassica carinata HOM05D002170 ORTHO05D007478 1.7e-225 785.8 431 91.4
Aa31LG8G4690 Aethionema arabicum HOM05D002170 ORTHO05D007478 1.0e-222 776.5 494 81.2
BraA01t03721Z Brassica rapa HOM05D002170 ORTHO05D007478 3.9e-222 774.6 438 88.8
A05p32010 Brassica napus HOM05D002170 ORTHO05D007478 9.5e-221 770.0 403 93.8
THA.LOC104820334 Tarenaya hassleriana HOM05D002170 ORTHO05D007478 9.2e-216 753.4 430 86.5
CsaV3_1G007330 Cucumis sativus L. HOM05D002170 ORTHO05D007478 2.6e-202 708.8 426 82.9
ClCG04G010450 Citrullus lanatus HOM05D002170 ORTHO05D007478 4.9e-201 704.5 403 85.9
MELO3C002149.2 Cucumis melo HOM05D002170 ORTHO05D007478 6.4e-201 704.1 403 85.6
CANSAT35G0706 Cannabis sativa HOM05D002170 ORTHO05D007478 5.4e-200 701.0 430 81.4
Thecc.03G062200 Theobroma cacao HOM05D002170 ORTHO05D007478 1.2e-199 699.9 431 80.5
Gohir.A09G175200 Gossypium hirsutum HOM05D002170 ORTHO05D007478 1.8e-198 696.0 429 80.9
Gorai.006G191200 Gossypium raimondii HOM05D002170 ORTHO05D007478 1.8e-198 696.0 429 80.9
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 2.3e-198 695.7 431 80.7
TAR629G0118 Trochodendron aralioides HOM05D002170 ORTHO05D007478 6.7e-198 694.1 407 83.3
MD06G1232500 Malus domestica HOM05D002170 ORTHO05D007478 1.1e-197 693.3 395 85.8
Haze_18913 Corylus avellana HOM05D002170 ORTHO05D007478 1.5e-197 693.0 430 80.7
Ciclev10020301m.g Citrus clementina HOM05D002170 ORTHO05D007478 2.5e-197 692.2 410 81.2
Eucgr.K02286 Eucalyptus grandis HOM05D002170 ORTHO05D007478 2.5e-197 692.2 401 84.0
Gohir.D09G169700 Gossypium hirsutum HOM05D002170 ORTHO05D007478 3.3e-197 691.8 429 80.7
Lj2g0009559 Lotus japonicus HOM05D002170 ORTHO05D007478 3.3e-197 691.8 430 80.2
SalBow5G3655 Salvia bowleyana HOM05D002170 ORTHO05D007478 3.3e-197 691.8 404 83.7
Actinidia09052 Actinidia chinensis HOM05D002170 ORTHO05D007478 4.3e-197 691.4 386 86.0
CSS0042449 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 4.3e-197 691.4 386 85.8
Potri.015G030600 Populus trichocarpa HOM05D002170 ORTHO05D007478 4.3e-197 691.4 382 87.7
Prupe.5G236800 Prunus persica HOM05D002170 ORTHO05D007478 4.3e-197 691.4 397 84.4
CSS0009402 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 5.6e-197 691.0 386 85.8
Duzib084G0411 Durio zibethinus HOM05D002170 ORTHO05D007478 5.6e-197 691.0 431 79.6
Glyma.07G105400 Glycine max HOM05D002170 ORTHO05D007478 7.4e-197 690.6 396 84.1
MD14G1239300 Malus domestica HOM05D002170 ORTHO05D007478 7.4e-197 690.6 429 80.4
Cfa020634 Carpinus fangiana HOM05D002170 ORTHO05D007478 9.6e-197 690.3 431 80.7
PGR044G0130 Punica granatum HOM05D002170 ORTHO05D007478 9.6e-197 690.3 404 83.4
QL10p031496 Quercus lobata HOM05D002170 ORTHO05D007478 9.6e-197 690.3 431 80.7
Lalb_Chr14g0370711 Lupinus albus HOM05D002170 ORTHO05D007478 1.6e-196 689.5 399 84.5
Atru.BG.197.p Acer truncatum HOM05D002170 ORTHO05D007478 2.1e-196 689.1 379 87.6
Hma1.2p1_0471F.1_g159440 Hydrangea macrophylla HOM05D002170 ORTHO05D007478 2.8e-196 688.7 438 80.4
Sabra15G0025500 Salix brachista HOM05D002170 ORTHO05D007478 2.8e-196 688.7 383 86.9
Sed0008892 Sechium edule HOM05D002170 ORTHO05D007478 2.8e-196 688.7 431 80.5
TPR.G22320 Trifolium pratense HOM05D002170 ORTHO05D007478 2.8e-196 688.7 431 80.3
TWI81G0098 Tripterygium wilfordii HOM05D002170 ORTHO05D007478 2.8e-196 688.7 430 80.0
Cpa.g.sc3.360 Carica papaya HOM05D002170 ORTHO05D007478 6.2e-196 687.6 433 78.5
CiPaw.16G097200 Carya illinoinensis HOM05D002170 ORTHO05D007478 6.2e-196 687.6 431 80.5
Duzib068G1477 Durio zibethinus HOM05D002170 ORTHO05D007478 6.2e-196 687.6 401 83.0
Ca_25357_v3 Cicer arietinum L. HOM05D002170 ORTHO05D007478 1.4e-195 686.4 432 78.9
Aqoxy3G04073 Aquilegia oxysepala HOM05D002170 ORTHO05D007478 2.4e-195 685.6 396 84.3
Manes.06G002900 Manihot esculenta HOM05D002170 ORTHO05D007478 2.4e-195 685.6 383 86.2
vmacro17769 Vaccinium macrocarpon HOM05D002170 ORTHO05D007478 2.4e-195 685.6 435 79.1
Migut.D01219 Erythranthe guttata HOM05D002170 ORTHO05D007478 4.0e-195 684.9 429 79.5
Glyma.09G172700 Glycine max HOM05D002170 ORTHO05D007478 1.2e-194 683.3 396 83.8
arahy.Tifrunner.gnm1.ann1.U6RNCV Arachis hypogaea HOM05D002170 ORTHO05D007478 1.5e-194 682.9 434 78.6
MSTRG.9351 Avicennia marina HOM05D002170 ORTHO05D007478 1.5e-194 682.9 410 81.0
FvH4_5g17680 Fragaria vesca HOM05D002170 ORTHO05D007478 2.0e-194 682.6 397 83.9
Medtr6g071210 Medicago truncatula HOM05D002170 ORTHO05D007478 2.0e-194 682.6 403 82.9
arahy.Tifrunner.gnm1.ann1.DTQ5EB Arachis hypogaea HOM05D002170 ORTHO05D007478 2.6e-194 682.2 434 78.3
FAN18G3495 Fragaria x ananassa HOM05D002170 ORTHO05D007478 2.6e-194 682.2 397 83.6
Rhsim08G0127800 Rhododendron simsii HOM05D002170 ORTHO05D007478 3.4e-194 681.8 435 78.4
RcHm_v2.0_Chr7g0177971 Rosa chinensis HOM05D002170 ORTHO05D007478 4.5e-194 681.4 399 83.2
CAN.G637.44 Capsicum annuum HOM05D002170 ORTHO05D007478 1.3e-193 679.9 425 79.5
Lalb_Chr22g0353421 Lupinus albus HOM05D002170 ORTHO05D007478 1.3e-193 679.9 399 83.5
EL10Ac2g03531 Beta vulgaris HOM05D002170 ORTHO05D007478 3.8e-193 678.3 414 80.0
CDE06G2490 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 4.9e-193 677.9 423 79.0
FAN04G0031 Fragaria x ananassa HOM05D002170 ORTHO05D007478 6.4e-193 677.6 397 83.1
FAN08G0558 Fragaria x ananassa HOM05D002170 ORTHO05D007478 6.4e-193 677.6 397 83.4
Hund22449 Selenicereus undatus HOM05D002170 ORTHO05D007478 6.4e-193 677.6 421 79.8
PGSC0003DMG400033683 Solanum tuberosum HOM05D002170 ORTHO05D007478 6.4e-193 677.6 430 78.4
Sopen03g028630 Solanum pennellii HOM05D002170 ORTHO05D007478 1.1e-192 676.8 430 78.4
Solyc03g097910.4 Solanum lycopersicum HOM05D002170 ORTHO05D007478 1.4e-192 676.4 430 78.4
Phvul.004G148000 Phaseolus vulgaris HOM05D002170 ORTHO05D007478 1.9e-192 676.0 395 82.8
HanXRQChr16g0511571 Helianthus annuus HOM05D002170 ORTHO05D007478 3.2e-192 675.2 427 78.5
Sc04g0004500 Simmondsia chinensis HOM05D002170 ORTHO05D007478 9.3e-192 673.7 404 81.2
ECA232G0406 Erigeron canadensis HOM05D002170 ORTHO05D007478 1.6e-191 672.9 386 83.9
PSO339G1858 Papaver somniferum HOM05D002170 ORTHO05D007478 3.5e-191 671.8 407 81.3
PSO384G2182 Papaver somniferum HOM05D002170 ORTHO05D007478 3.5e-191 671.8 407 81.3
HanXRQChr15g0492101 Helianthus annuus HOM05D002170 ORTHO05D007478 4.6e-191 671.4 419 79.2
Ah.16g108010 Amaranthus hybridus HOM05D002170 ORTHO05D007478 6.0e-191 671.0 407 81.3
SEGI_10571 Sequoiadendron giganteum HOM05D002170 ORTHO05D007478 6.0e-191 671.0 434 77.6
Lsat_1_v5_gn_0_10461 Lactuca sativa HOM05D002170 ORTHO05D007478 7.9e-191 670.6 427 79.4
Lj9C416G6 Lonicera japonica HOM05D002170 ORTHO05D007478 3.0e-190 668.7 413 80.1
HPP92_007961 Vanilla planifolia HOM05D002170 ORTHO05D007478 8.7e-190 667.2 407 80.8
Os02g0736400 Oryza sativa ssp. japonica HOM05D002170 ORTHO05D007478 1.9e-189 666.0 386 84.2
CiPaw.15G147300 Carya illinoinensis HOM05D002170 ORTHO05D007478 7.4e-189 664.1 368 87.0
Cc04_g09360 Coffea canephora HOM05D002170 ORTHO05D007478 1.6e-188 662.9 432 75.7
DCAR_003532 Daucus carota HOM05D002170 ORTHO05D007478 2.8e-188 662.1 403 80.6
Oeu023513.1 Olea europaea HOM05D002170 ORTHO05D007478 2.8e-188 662.1 404 80.0
Peaxi162Scf00171g01030 Petunia axillaris HOM05D002170 ORTHO05D007478 2.8e-188 662.1 432 78.2
AUR62041617 Chenopodium quinoa HOM05D002170 ORTHO05D007478 6.2e-188 661.0 404 80.2
GSVIVG01008478001 Vitis vinifera HOM05D002170 ORTHO05D007478 1.4e-187 659.8 368 86.7
Zm00001eb253890 Zea mays HOM05D002170 ORTHO05D007478 1.5e-186 656.4 409 79.5
ATR0118G019 Amborella trichopoda HOM05D002170 ORTHO05D007478 2.6e-186 655.6 406 79.1
Atru.chr9.1597 Acer truncatum HOM05D002170 ORTHO05D007478 1.9e-184 649.4 365 86.0
Nitab4.5_0006581g0020 Nicotiana tabacum HOM05D002170 ORTHO05D007478 2.5e-181 639.0 392 81.4
AagrBONN_evm.TU.Sc2ySwM_362.1270 Anthoceros agrestis HOM05D002170 ORTHO05D007478 1.6e-180 636.3 394 74.9
Pp3c20_21870 Physcomitrium patens HOM05D002170 ORTHO05D007478 4.8e-180 634.8 429 72.7
Nitab4.5_0000430g0180 Nicotiana tabacum HOM05D002170 ORTHO05D007478 8.2e-180 634.0 395 80.3
AUR62036004 Chenopodium quinoa HOM05D002170 ORTHO05D007478 3.1e-179 632.1 368 82.9
Pp3c23_13670 Physcomitrium patens HOM05D002170 ORTHO05D007478 6.9e-179 630.9 394 77.2
BcaC01g03730 Brassica carinata HOM05D002170 ORTHO05D007478 8.5e-177 624.0 422 76.8
SMO356G0689 Selaginella moellendorffii HOM05D002170 ORTHO05D007478 7.2e-176 620.9 394 74.9
Mapoly0033s0018 Marchantia polymorpha HOM05D002170 ORTHO05D007478 5.1e-174 614.8 389 77.4
Dinv05998 Davidia involucrata HOM05D002170 ORTHO05D007478 2.8e-172 609.0 383 79.4
Psat1g029560 Pisum sativum HOM05D002170 ORTHO05D007478 3.8e-169 598.6 346 83.8
CBR_g39071 Chara braunii HOM05D002170 ORTHO05D007478 3.8e-161 572.0 386 69.7
MCO10G163 Micromonas commoda HOM05D002170 ORTHO05D007478 1.9e-160 569.7 380 72.9
C03p49210 Brassica napus HOM05D002170 ORTHO05D007478 3.3e-157 558.9 442 68.6
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 2.9e-153 545.8 315 84.8
PRCOL_00005290 Prasinoderma coloniale HOM05D002170 ORTHO05D007478 3.8e-153 545.4 369 71.5
SHI19063 Sapria himalayana HOM05D002170 ORTHO05D007478 1.1e-152 543.9 335 76.4
CDE04G1365 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 1.4e-150 537.0 384 70.8
Cre13.g578750 Chlamydomonas reinhardtii HOM05D002170 ORTHO05D007478 2.6e-149 532.7 386 65.8
BolC3t17203H Brassica oleracea HOM05D002170 ORTHO05D007478 7.2e-144 514.6 299 85.3
unitig_27.g25082 Utricularia gibba HOM05D002170 ORTHO05D007478 3.8e-137 492.3 288 83.0
Potri.012G043300 Populus trichocarpa HOM05D002170 ORTHO05D007478 2.1e-106 390.2 267 74.2
Oeu016182.1 Olea europaea HOM05D002170 ORTHO05D007478 6.2e-103 378.6 280 68.9
Haze_26546 Corylus avellana HOM05D002170 ORTHO05D007478 5.3e-70 269.2 353 40.8
Haze_27328 Corylus avellana HOM05D002170 ORTHO05D007478 5.8e-69 265.8 334 41.3
SGA_v2.0_scaffold40G15643 Striga asiatica HOM05D002170 ORTHO05D007478 1.5e-64 251.1 160 80.0
SGA_v2.0_scaffold1356G53925 Striga asiatica HOM05D002170 ORTHO05D007478 2.5e-51 207.2 118 83.9
Solyc02g044040.3 Solanum lycopersicum HOM05D002170 ORTHO05D390875 1.5e-45 188.0 113 77.0
BraA03t13196Z Brassica rapa HOM05D002170 ORTHO05D023792 1.4e-38 164.9 84 94.0
A03p40410 Brassica napus HOM05D002170 ORTHO05D023792 2.6e-37 160.6 84 90.5
Phvul.008G096200 Phaseolus vulgaris HOM05D002170 ORTHO05D023792 1.2e-29 135.2 84 75.0
Psat3g071120 Pisum sativum HOM05D002170 ORTHO05D327785 5.5e-27 126.3 125 57.6
Ca_22557_v3 Cicer arietinum L. HOM05D002170 ORTHO05D148971 8.3e-23 112.5 57 86.0
unitig_27.g25081 Utricularia gibba HOM05D002170 ORTHO05D007478 2.0e-21 107.8 88 68.2
MSTRG.4628 Avicennia marina HOM05D002170 ORTHO05D023792 1.0e-20 105.5 80 65.0
BolC3t17202H Brassica oleracea HOM05D000003 ORTHO05D001498 2.5e-19 100.9 75 77.3
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 4.0e-17 93.6 195 33.3
MD05G1052900 Malus domestica HOM05D002170 ORTHO05D000222 2.9e-15 87.4 63 71.4
BcaB04g18967 Brassica carinata HOM05D002170 ORTHO05D023792 1.0e-12 79.0 65 66.2
Ca_03420_v3 Cicer arietinum L. HOM05D002170 ORTHO05D148646 3.1e-09 67.4 40 72.5


User provided reference genes

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