Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR061010 Cardamine hirsuta HOM05D001374 ORTHO05D004296 5.2e-37 157.1 76 100.0
Carub.0002s1482 Capsella rubella HOM05D001374 ORTHO05D004296 2.0e-28 128.6 73 83.6
Aa31LG2G6960 Aethionema arabicum HOM05D001374 ORTHO05D004296 1.3e-27 125.9 76 77.6
Ah.03g138230 Amaranthus hybridus HOM05D001374 ORTHO05D004296 1.1e-26 122.9 76 72.4
EL10Ac7g17806 Beta vulgaris HOM05D001374 ORTHO05D004296 7.0e-26 120.2 76 71.1
AUR62002537 Chenopodium quinoa HOM05D001374 ORTHO05D004296 7.0e-26 120.2 76 71.1
Oeu054996.3 Olea europaea HOM05D001374 ORTHO05D004296 2.7e-25 118.2 76 68.4
Sabra08G0092800 Salix brachista HOM05D001374 ORTHO05D004296 2.7e-25 118.2 76 69.7
unitig_22.g5575 Utricularia gibba HOM05D001374 ORTHO05D004296 3.5e-25 117.9 76 68.4
unitig_24.g30583 Utricularia gibba HOM05D001374 ORTHO05D004296 3.5e-25 117.9 76 68.4
AUR62002847 Chenopodium quinoa HOM05D001374 ORTHO05D004296 4.6e-25 117.5 76 69.7
AUR62023655 Chenopodium quinoa HOM05D001374 ORTHO05D004296 4.6e-25 117.5 76 69.7
CAN.G610.65 Capsicum annuum HOM05D001374 ORTHO05D004296 1.0e-24 116.3 76 68.4
Potri.008G122200 Populus trichocarpa HOM05D001374 ORTHO05D004296 1.0e-24 116.3 76 67.1
Manes.14G104300 Manihot esculenta HOM05D001374 ORTHO05D004296 1.3e-24 115.9 76 68.4
MD13G1039800 Malus domestica HOM05D001374 ORTHO05D004296 1.7e-24 115.5 76 69.7
GSVIVG01018308001 Vitis vinifera HOM05D001374 ORTHO05D004296 1.7e-24 115.5 76 68.4
AUR62037316 Chenopodium quinoa HOM05D001374 ORTHO05D004296 2.3e-24 115.2 76 68.4
Ca_11159_v3 Cicer arietinum L. HOM05D001374 ORTHO05D004296 2.3e-24 115.2 76 68.4
Gorai.009G347600 Gossypium raimondii HOM05D001374 ORTHO05D004296 2.3e-24 115.2 76 69.7
Nitab4.5_0001616g0020 Nicotiana tabacum HOM05D001374 ORTHO05D004296 2.3e-24 115.2 76 68.4
Gohir.A05G321600 Gossypium hirsutum HOM05D001374 ORTHO05D004296 3.0e-24 114.8 76 69.7
Lalb_Chr06g0166001 Lupinus albus HOM05D001374 ORTHO05D004296 3.0e-24 114.8 76 68.4
Actinidia16665 Actinidia chinensis HOM05D001374 ORTHO05D004296 3.9e-24 114.4 75 68.0
Gohir.D05G323900 Gossypium hirsutum HOM05D001374 ORTHO05D004296 3.9e-24 114.4 76 69.7
Solyc05g009220.3 Solanum lycopersicum HOM05D001374 ORTHO05D004296 3.9e-24 114.4 76 67.1
THA.LOC104821915 Tarenaya hassleriana HOM05D001374 ORTHO05D004296 3.9e-24 114.4 74 68.9
Actinidia14906 Actinidia chinensis HOM05D001374 ORTHO05D004296 5.0e-24 114.0 76 65.8
MSTRG.2228 Avicennia marina HOM05D001374 ORTHO05D004296 5.0e-24 114.0 76 67.1
EL10Ac6g14344 Beta vulgaris HOM05D001374 ORTHO05D004296 5.0e-24 114.0 76 68.4
CDE06G1000 Ceratophyllum demersum HOM05D001374 ORTHO05D004296 5.0e-24 114.0 76 67.1
Manes.06G066500 Manihot esculenta HOM05D001374 ORTHO05D004296 5.0e-24 114.0 76 68.4
CiPaw.05G239400 Carya illinoinensis HOM05D001374 ORTHO05D004296 6.6e-24 113.6 76 65.8
Prupe.1G313400 Prunus persica HOM05D001374 ORTHO05D004296 6.6e-24 113.6 76 67.1
Medtr1g110430 Medicago truncatula HOM05D001374 ORTHO05D004296 8.6e-24 113.2 76 65.8
PGSC0003DMG400014572 Solanum tuberosum HOM05D001374 ORTHO05D004296 8.6e-24 113.2 76 65.8
GSVIVG01011871001 Vitis vinifera HOM05D001374 ORTHO05D004296 8.6e-24 113.2 76 67.1
Lalb_Chr02g0145891 Lupinus albus HOM05D001374 ORTHO05D004296 1.1e-23 112.8 76 68.4
MD16G1040700 Malus domestica HOM05D001374 ORTHO05D004296 1.1e-23 112.8 74 67.6
Oeu059498.1 Olea europaea HOM05D001374 ORTHO05D004296 1.1e-23 112.8 76 67.1
Sopen05g004940 Solanum pennellii HOM05D001374 ORTHO05D004296 1.1e-23 112.8 76 65.8
Thecc.07G144700 Theobroma cacao HOM05D001374 ORTHO05D004296 1.1e-23 112.8 76 68.4
MSTRG.850 Avicennia marina HOM05D001374 ORTHO05D004296 1.5e-23 112.5 76 67.1
Nitab4.5_0003867g0050 Nicotiana tabacum HOM05D001374 ORTHO05D004296 1.5e-23 112.5 76 67.1
Hund20774 Selenicereus undatus HOM05D001374 ORTHO05D004296 1.5e-23 112.5 77 67.5
AL1G39980 Arabidopsis lyrata HOM05D001374 ORTHO05D004296 1.9e-23 112.1 77 70.1
Haze_00619 Corylus avellana HOM05D001374 ORTHO05D004296 1.9e-23 112.1 76 68.4
Os01g0185200 Oryza sativa ssp. japonica HOM05D001374 ORTHO05D004296 1.9e-23 112.1 74 67.6
SGA_v2.0_scaffold38G14957 Striga asiatica HOM05D001374 ORTHO05D004296 1.9e-23 112.1 77 68.8
arahy.Tifrunner.gnm1.ann1.DTRW9U Arachis hypogaea HOM05D001374 ORTHO05D004296 2.5e-23 111.7 76 68.4
arahy.Tifrunner.gnm1.ann1.VKD07K Arachis hypogaea HOM05D001374 ORTHO05D004296 2.5e-23 111.7 76 68.4
Carub.0001s2516 Capsella rubella HOM05D001374 ORTHO05D004296 2.5e-23 111.7 77 68.8
Duzib248G1131 Durio zibethinus HOM05D001374 ORTHO05D004296 2.5e-23 111.7 76 67.1
Phvul.007G028800 Phaseolus vulgaris HOM05D001374 ORTHO05D004296 2.5e-23 111.7 76 64.5
Zm00001eb121810 Zea mays HOM05D001374 ORTHO05D004296 2.5e-23 111.7 74 67.6
Zm00001eb337800 Zea mays HOM05D001374 ORTHO05D004296 2.5e-23 111.7 74 67.6
Psat6g226160 Pisum sativum HOM05D001374 ORTHO05D004296 3.3e-23 111.3 76 64.5
VMungo0720G1962 Vigna mungo HOM05D001374 ORTHO05D004296 3.3e-23 111.3 76 64.5
Atru.chr7.1031 Acer truncatum HOM05D001374 ORTHO05D004296 4.3e-23 110.9 76 64.5
FvH4_4g27080 Fragaria vesca HOM05D001374 ORTHO05D004296 4.3e-23 110.9 77 70.1
FAN12G2409 Fragaria x ananassa HOM05D001374 ORTHO05D004296 4.3e-23 110.9 77 70.1
FAN12G3668 Fragaria x ananassa HOM05D001374 ORTHO05D004296 4.3e-23 110.9 77 70.1
FAN17G1418 Fragaria x ananassa HOM05D001374 ORTHO05D004296 4.3e-23 110.9 77 70.1
FAN22G1881 Fragaria x ananassa HOM05D001374 ORTHO05D004296 4.3e-23 110.9 77 70.1
Atru.chr11.139 Acer truncatum HOM05D001374 ORTHO05D004296 5.6e-23 110.5 76 64.5
CSS0047778 Camellia sinensis var. sinensis HOM05D001374 ORTHO05D004296 5.6e-23 110.5 76 64.5
CARHR026140 Cardamine hirsuta HOM05D001374 ORTHO05D004296 5.6e-23 110.5 77 68.8
Ciclev10014320m.g Citrus clementina HOM05D001374 ORTHO05D004296 5.6e-23 110.5 76 64.5
HanXRQChr12g0371141 Helianthus annuus HOM05D001374 ORTHO05D004296 5.6e-23 110.5 76 63.2
HPP92_021791 Vanilla planifolia HOM05D001374 ORTHO05D004296 5.6e-23 110.5 75 64.0
CSS0016974 Camellia sinensis var. sinensis HOM05D001374 ORTHO05D004296 7.3e-23 110.2 76 65.8
CSS0034691 Camellia sinensis var. sinensis HOM05D001374 ORTHO05D004296 7.3e-23 110.2 76 65.8
CiPaw.06G018700 Carya illinoinensis HOM05D001374 ORTHO05D004296 7.3e-23 110.2 76 63.2
COL.COLO4_06769 Corchorus olitorius HOM05D001374 ORTHO05D004296 7.3e-23 110.2 76 65.8
SalBow8G3975 Salvia bowleyana HOM05D001374 ORTHO05D004296 7.3e-23 110.2 76 63.2
BcaC05g26679 Brassica carinata HOM05D001374 ORTHO05D004296 1.2e-22 109.4 77 68.8
A09p39220 Brassica napus HOM05D001374 ORTHO05D004296 1.2e-22 109.4 77 68.8
BraA09t39421Z Brassica rapa HOM05D001374 ORTHO05D004296 1.2e-22 109.4 77 68.8
CDE07G1238 Ceratophyllum demersum HOM05D001374 ORTHO05D004296 1.2e-22 109.4 76 64.5
MELO3C023301.2 Cucumis melo HOM05D001374 ORTHO05D004296 1.2e-22 109.4 70 68.6
CsaV3_2G014770 Cucumis sativus L. HOM05D001374 ORTHO05D004296 1.2e-22 109.4 70 68.6
Glyma.10G272800 Glycine max HOM05D001374 ORTHO05D004296 1.2e-22 109.4 76 63.2
AT1G25350 Arabidopsis thaliana HOM05D001374 ORTHO05D004296 1.6e-22 109.0 77 67.5
ClCG02G012120 Citrullus lanatus HOM05D001374 ORTHO05D004296 1.6e-22 109.0 70 67.1
BolC5t31249H Brassica oleracea HOM05D001374 ORTHO05D004296 2.1e-22 108.6 77 68.8
Cfa015867 Carpinus fangiana HOM05D001374 ORTHO05D004296 2.1e-22 108.6 76 65.8
ClCG11G004350 Citrullus lanatus HOM05D001374 ORTHO05D004296 2.1e-22 108.6 70 67.1
vmacro10571 Vaccinium macrocarpon HOM05D001374 ORTHO05D004296 2.1e-22 108.6 76 64.5
CsaV3_2G016280 Cucumis sativus L. HOM05D001374 ORTHO05D004296 2.8e-22 108.2 70 68.6
Eucgr.B03004 Eucalyptus grandis HOM05D001374 ORTHO05D004296 2.8e-22 108.2 77 66.2
Hma1.2p1_0061F.1_g033680 Hydrangea macrophylla HOM05D001374 ORTHO05D004296 2.8e-22 108.2 76 63.2
Sabra10G0093000 Salix brachista HOM05D001374 ORTHO05D004296 2.8e-22 108.2 74 63.5
Sp1g22870 Schrenkiella parvula HOM05D001374 ORTHO05D004296 2.8e-22 108.2 75 69.3
SGA_v2.0_scaffold32G13114 Striga asiatica HOM05D001374 ORTHO05D004296 2.8e-22 108.2 73 67.1
AL6G31240 Arabidopsis lyrata HOM05D001374 ORTHO05D004296 3.6e-22 107.8 77 66.2
Carub.0003s3008 Capsella rubella HOM05D001374 ORTHO05D004296 3.6e-22 107.8 77 67.5
Lsat_1_v5_gn_2_80001 Lactuca sativa HOM05D001374 ORTHO05D004296 3.6e-22 107.8 76 63.2
Rhsim09G0106300 Rhododendron simsii HOM05D001374 ORTHO05D004296 3.6e-22 107.8 77 64.9
RcHm_v2.0_Chr6g0267171 Rosa chinensis HOM05D001374 ORTHO05D004296 3.6e-22 107.8 77 66.2
BcaC01g01691 Brassica carinata HOM05D001374 ORTHO05D004296 4.7e-22 107.5 77 68.8
HanXRQChr16g0508691 Helianthus annuus HOM05D001374 ORTHO05D004296 4.7e-22 107.5 76 63.2
PSO063G7347 Papaver somniferum HOM05D001374 ORTHO05D004296 4.7e-22 107.5 74 64.9
PSO782G3382 Papaver somniferum HOM05D001374 ORTHO05D004296 4.7e-22 107.5 74 64.9
C05p25160 Brassica napus HOM05D001374 ORTHO05D004296 6.2e-22 107.1 77 67.5
FAN07G0461 Fragaria x ananassa HOM05D001374 ORTHO05D004296 6.2e-22 107.1 77 68.8
Lsat_1_v5_gn_8_40760 Lactuca sativa HOM05D001374 ORTHO05D004296 6.2e-22 107.1 75 62.7
Sc14g0007390 Simmondsia chinensis HOM05D001374 ORTHO05D004296 6.2e-22 107.1 76 63.2
BcaC05g26473 Brassica carinata HOM05D001374 ORTHO05D004296 8.1e-22 106.7 76 67.1
Sed0001283 Sechium edule HOM05D001374 ORTHO05D004296 8.1e-22 106.7 70 65.7
COL.COLO4_07078 Corchorus olitorius HOM05D001374 ORTHO05D004296 1.1e-21 106.3 76 64.5
DCAR_021035 Daucus carota HOM05D001374 ORTHO05D004296 1.1e-21 106.3 76 61.8
DCAR_023648 Daucus carota HOM05D001374 ORTHO05D004296 1.1e-21 106.3 76 64.5
ECA233G2275 Erigeron canadensis HOM05D001374 ORTHO05D004296 1.1e-21 106.3 76 61.8
Lj6C756T1 Lonicera japonica HOM05D001374 ORTHO05D004296 1.1e-21 106.3 74 63.5
TWI79G1774 Tripterygium wilfordii HOM05D001374 ORTHO05D004296 1.1e-21 106.3 76 61.8
Duzib251G0305 Durio zibethinus HOM05D001374 ORTHO05D004296 1.4e-21 105.9 76 61.8
Thhalv10006840m.g Eutrema salsugineum HOM05D001374 ORTHO05D004296 1.4e-21 105.9 77 66.2
Cc11_g09920 Coffea canephora HOM05D001374 ORTHO05D004296 1.8e-21 105.5 76 59.2
Lj4g0028120 Lotus japonicus HOM05D001374 ORTHO05D004296 1.8e-21 105.5 76 63.2
BolC3t19594H Brassica oleracea HOM05D001374 ORTHO05D004296 2.3e-21 105.1 75 68.0
BraA08t34642Z Brassica rapa HOM05D001374 ORTHO05D004296 2.3e-21 105.1 75 68.0
Glyma.20G117100 Glycine max HOM05D001374 ORTHO05D004296 2.3e-21 105.1 76 60.5
Os05g0182800 Oryza sativa ssp. japonica HOM05D001374 ORTHO05D004296 2.3e-21 105.1 74 63.5
RcHm_v2.0_Chr4g0434881 Rosa chinensis HOM05D001374 ORTHO05D004296 2.3e-21 105.1 77 64.9
CANSAT56G0741 Cannabis sativa HOM05D001374 ORTHO05D004296 3.1e-21 104.8 76 63.2
MELO3C020839.2 Cucumis melo HOM05D001374 ORTHO05D004296 3.1e-21 104.8 70 65.7
PGR102G0253 Punica granatum HOM05D001374 ORTHO05D004296 3.1e-21 104.8 76 63.2
TAR371G0094 Trochodendron aralioides HOM05D001374 ORTHO05D004296 3.1e-21 104.8 74 60.8
C03p72940 Brassica napus HOM05D001374 ORTHO05D004296 4.0e-21 104.4 77 66.2
AT1G68325 Arabidopsis thaliana HOM05D001374 ORTHO05D004296 5.2e-21 104.0 73 71.2
Dinv31622 Davidia involucrata HOM05D001374 ORTHO05D004296 5.2e-21 104.0 76 59.2
ATR0691G154 Amborella trichopoda HOM05D001374 ORTHO05D004296 6.8e-21 103.6 74 63.5
RcHm_v2.0_Chr1g0324801 Rosa chinensis HOM05D001374 ORTHO05D004296 8.9e-21 103.2 77 66.2
Dinv21063 Davidia involucrata HOM05D001374 ORTHO05D004296 1.2e-20 102.8 75 57.3
Pp3c1_19680 Physcomitrium patens HOM05D001374 ORTHO05D004296 1.2e-20 102.8 70 62.9
QL01p040852 Quercus lobata HOM05D001374 ORTHO05D004296 1.2e-20 102.8 75 60.0
Cpa.g.sc798.2 Carica papaya HOM05D001374 ORTHO05D004296 2.0e-20 102.1 74 59.5
TPR.G4913 Trifolium pratense HOM05D001374 ORTHO05D004296 2.0e-20 102.1 71 64.8
Mapoly0039s0055 Marchantia polymorpha HOM05D001374 ORTHO05D004296 3.4e-20 101.3 73 60.3
Sed0019956 Sechium edule HOM05D001374 ORTHO05D004296 1.3e-19 99.4 70 61.4
Aqoxy3G00265 Aquilegia oxysepala HOM05D001374 ORTHO05D004296 6.4e-19 97.1 74 59.5
Migut.L01049 Erythranthe guttata HOM05D001374 ORTHO05D004296 6.4e-19 97.1 77 61.0
TAR371G0932 Trochodendron aralioides HOM05D001374 ORTHO05D004296 8.3e-19 96.7 74 56.8
TAR371G0884 Trochodendron aralioides HOM05D001374 ORTHO05D004296 1.4e-18 95.9 74 56.8
BcaB03g12025 Brassica carinata HOM05D001374 ORTHO05D004296 3.2e-18 94.7 62 71.0
BcaB03g12026 Brassica carinata HOM05D001374 ORTHO05D004296 3.2e-18 94.7 62 71.0
SEGI_13900 Sequoiadendron giganteum HOM05D001374 ORTHO05D004296 3.2e-18 94.7 72 52.8
SMO347G0322 Selaginella moellendorffii HOM05D001374 ORTHO05D004296 6.6e-16 87.0 71 57.7
Nn5g28146 Nelumbo nucifera HOM05D001374 ORTHO05D004296 4.7e-14 80.9 65 55.4
PRCOL_00001723 Prasinoderma coloniale HOM05D001374 ORTHO05D004296 8.9e-13 76.6 64 53.1
SMO361G0624 Selaginella moellendorffii HOM05D001374 ORTHO05D004296 8.9e-13 76.6 70 48.6
A08p26960 Brassica napus HOM05D001374 ORTHO05D004296 2.6e-12 75.1 52 69.2
SMO361G0577 Selaginella moellendorffii HOM05D001374 ORTHO05D004296 2.6e-12 75.1 70 48.6
Nn4g23889 Nelumbo nucifera HOM05D001374 ORTHO05D004296 8.4e-11 70.1 52 61.5
Cre14.g614900 Chlamydomonas reinhardtii HOM05D001374 ORTHO05D004296 1.1e-10 69.7 69 50.7
TAR374G1395 Trochodendron aralioides HOM05D001374 ORTHO05D004296 2.1e-09 65.5 47 57.4
Lalb_Chr21g0308841 Lupinus albus HOM05D001374 ORTHO05D004296 1.5e-07 59.3 48 54.2
AT5G19720 Arabidopsis thaliana HOM05D001374 ORTHO05D004296 9.6e-07 56.6 77 45.5
MCO01G766 Micromonas commoda HOM05D001374 ORTHO05D004296 1.2e-06 56.2 64 45.3


User provided reference genes

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