Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR051750 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.1e-79 298.5 164 100.0
CARHR109990 Cardamine hirsuta HOM05D004528 ORTHO05D005815 8.0e-59 230.7 161 78.3
AL3G48690 Arabidopsis lyrata HOM05D004528 ORTHO05D005815 3.0e-58 228.8 161 78.3
BcaB08g34873 Brassica carinata HOM05D004528 ORTHO05D005815 3.0e-58 228.8 161 76.4
C07p02330 Brassica napus HOM05D004528 ORTHO05D005815 3.0e-58 228.8 161 78.3
Carub.0003s3385 Capsella rubella HOM05D004528 ORTHO05D005815 3.0e-58 228.8 161 77.6
BcaC06g36598 Brassica carinata HOM05D004528 ORTHO05D005815 4.0e-58 228.4 161 77.6
BraA07t27910Z Brassica rapa HOM05D004528 ORTHO05D005815 4.0e-58 228.4 161 77.6
BcaC05g26001 Brassica carinata HOM05D004528 ORTHO05D005815 1.5e-57 226.5 161 77.6
A07p01220 Brassica napus HOM05D004528 ORTHO05D005815 2.0e-57 226.1 161 77.0
Thhalv10022707m.g Eutrema salsugineum HOM05D004528 ORTHO05D005815 2.0e-57 226.1 161 77.0
AT2G19560 Arabidopsis thaliana HOM05D004528 ORTHO05D005815 3.4e-57 225.3 161 75.8
BolC7t40641H Brassica oleracea HOM05D004528 ORTHO05D005815 4.4e-57 224.9 161 77.6
Sp3g32930 Schrenkiella parvula HOM05D004528 ORTHO05D005815 1.7e-56 223.0 161 75.8
BcaB04g16932 Brassica carinata HOM05D004528 ORTHO05D005815 3.7e-56 221.9 161 75.2
BcaB04g16933 Brassica carinata HOM05D004528 ORTHO05D005815 3.7e-56 221.9 161 75.2
C05p19590 Brassica napus HOM05D004528 ORTHO05D005815 4.8e-56 221.5 161 76.4
BolC5t30662H Brassica oleracea HOM05D004528 ORTHO05D005815 4.8e-56 221.5 161 76.4
Aa31LG8G16570 Aethionema arabicum HOM05D004528 ORTHO05D005815 5.4e-55 218.0 161 74.5
BcaB03g16691 Brassica carinata HOM05D004528 ORTHO05D005815 8.6e-53 210.7 153 74.5
CARHR122320 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.1e-52 210.3 150 75.3
CARHR052790 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.5e-52 209.9 151 76.8
THA.LOC104820025 Tarenaya hassleriana HOM05D004528 ORTHO05D005815 1.5e-52 209.9 161 71.4
Gohir.A06G072200 Gossypium hirsutum HOM05D004528 ORTHO05D005815 1.4e-50 203.4 161 69.6
Gohir.D06G070800 Gossypium hirsutum HOM05D004528 ORTHO05D005815 4.0e-50 201.8 161 68.9
Gorai.010G082500 Gossypium raimondii HOM05D004528 ORTHO05D005815 4.0e-50 201.8 161 68.9
COL.COLO4_18209 Corchorus olitorius HOM05D004528 ORTHO05D005815 1.5e-49 199.9 161 68.9
Duzib150G1454 Durio zibethinus HOM05D004528 ORTHO05D005815 2.2e-48 196.1 153 68.6
Thecc.09G090300 Theobroma cacao HOM05D004528 ORTHO05D005815 6.3e-48 194.5 161 66.5
Manes.16G102700 Manihot esculenta HOM05D004528 ORTHO05D005815 1.4e-47 193.4 161 65.8
Cpa.g.sc283.9 Carica papaya HOM05D004528 ORTHO05D005815 4.1e-47 191.8 161 65.2
Atru.chr7.1579 Acer truncatum HOM05D004528 ORTHO05D005815 1.6e-46 189.9 161 65.2
CANSAT56G0596 Cannabis sativa HOM05D004528 ORTHO05D005815 5.9e-46 188.0 161 66.5
CANSAT56G1313 Cannabis sativa HOM05D004528 ORTHO05D005815 5.9e-46 188.0 161 66.5
Potri.006G221700 Populus trichocarpa HOM05D004528 ORTHO05D005815 7.8e-46 187.6 161 65.2
MSTRG.17774 Avicennia marina HOM05D004528 ORTHO05D005815 1.0e-45 187.2 160 64.4
Ciclev10008462m.g Citrus clementina HOM05D004528 ORTHO05D005815 1.0e-45 187.2 161 64.6
Dinv36760 Davidia involucrata HOM05D004528 ORTHO05D005815 1.3e-45 186.8 161 64.6
ECA240G0155 Erigeron canadensis HOM05D004528 ORTHO05D005815 1.7e-45 186.4 158 65.8
SalBow6G2464 Salvia bowleyana HOM05D004528 ORTHO05D005815 1.7e-45 186.4 160 63.1
vmacro17227 Vaccinium macrocarpon HOM05D004528 ORTHO05D005815 2.3e-45 186.0 161 64.6
GSVIVG01015212001 Vitis vinifera HOM05D004528 ORTHO05D005815 2.9e-45 185.7 161 64.0
RcHm_v2.0_Chr2g0093221 Rosa chinensis HOM05D004528 ORTHO05D005815 5.0e-45 184.9 161 62.7
MELO3C004622.2 Cucumis melo HOM05D004528 ORTHO05D005815 6.6e-45 184.5 161 64.0
Migut.J00603 Erythranthe guttata HOM05D004528 ORTHO05D005815 6.6e-45 184.5 160 63.1
FvH4_1g07290 Fragaria vesca HOM05D004528 ORTHO05D005815 8.6e-45 184.1 161 62.7
FAN19G1322 Fragaria x ananassa HOM05D004528 ORTHO05D005815 8.6e-45 184.1 161 62.7
FAN23G0078 Fragaria x ananassa HOM05D004528 ORTHO05D005815 8.6e-45 184.1 161 62.7
FAN28G2769 Fragaria x ananassa HOM05D004528 ORTHO05D005815 8.6e-45 184.1 161 62.7
PGR142G0229 Punica granatum HOM05D004528 ORTHO05D005815 8.6e-45 184.1 161 63.4
Actinidia25256 Actinidia chinensis HOM05D004528 ORTHO05D005815 1.1e-44 183.7 161 63.4
CSS0033534 Camellia sinensis var. sinensis HOM05D004528 ORTHO05D005815 1.5e-44 183.3 161 62.1
CiPaw.03G217000 Carya illinoinensis HOM05D004528 ORTHO05D005815 1.9e-44 183.0 163 63.8
QL02p062827 Quercus lobata HOM05D004528 ORTHO05D005815 1.9e-44 183.0 158 65.2
TWI34G0432 Tripterygium wilfordii HOM05D004528 ORTHO05D005815 1.9e-44 183.0 161 61.5
Lj7A674G30 Lonicera japonica HOM05D004528 ORTHO05D005815 4.3e-44 181.8 153 64.7
HanXRQChr09g0238111 Helianthus annuus HOM05D004528 ORTHO05D005815 5.6e-44 181.4 158 62.7
Sed0012435 Sechium edule HOM05D004528 ORTHO05D005815 5.6e-44 181.4 161 62.7
MD02G1077700 Malus domestica HOM05D004528 ORTHO05D005815 7.3e-44 181.0 161 63.4
SGA_v2.0_scaffold62G21604 Striga asiatica HOM05D004528 ORTHO05D005815 7.3e-44 181.0 160 62.5
unitig_748.g7306 Utricularia gibba HOM05D004528 ORTHO05D005815 7.3e-44 181.0 153 64.7
Hma1.2p1_0800F.1_g220090 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 9.5e-44 180.6 161 61.5
MD15G1206300 Malus domestica HOM05D004528 ORTHO05D005815 4.7e-43 178.3 161 62.1
CsaV3_2G001490 Cucumis sativus L. HOM05D004528 ORTHO05D005815 8.0e-43 177.6 153 62.1
VMungo1215G0680 Vigna mungo HOM05D004528 ORTHO05D005815 1.0e-42 177.2 161 62.1
Lalb_Chr13g0299741 Lupinus albus HOM05D004528 ORTHO05D005815 1.8e-42 176.4 161 61.5
Prupe.7G211100 Prunus persica HOM05D004528 ORTHO05D005815 1.8e-42 176.4 161 60.2
PGSC0003DMG400013151 Solanum tuberosum HOM05D004528 ORTHO05D005815 1.8e-42 176.4 160 60.6
Cc06_g11330 Coffea canephora HOM05D004528 ORTHO05D005815 2.3e-42 176.0 157 63.1
Haze_25904 Corylus avellana HOM05D004528 ORTHO05D005815 2.3e-42 176.0 156 62.2
CAN.G1208.1 Capsicum annuum HOM05D004528 ORTHO05D005815 3.0e-42 175.6 158 60.8
Sc18g0002070 Simmondsia chinensis HOM05D004528 ORTHO05D005815 4.0e-42 175.3 161 61.5
Solyc07g039210.4 Solanum lycopersicum HOM05D004528 ORTHO05D005815 4.0e-42 175.3 160 60.6
Phvul.003G137300 Phaseolus vulgaris HOM05D004528 ORTHO05D005815 1.2e-41 173.7 161 60.2
Eucgr.C00900 Eucalyptus grandis HOM05D004528 ORTHO05D005815 2.0e-41 172.9 160 61.2
Sopen07g017560 Solanum pennellii HOM05D004528 ORTHO05D005815 2.6e-41 172.6 160 59.4
Glyma.13G103500 Glycine max HOM05D004528 ORTHO05D005815 3.4e-41 172.2 158 60.1
arahy.Tifrunner.gnm1.ann1.A138U3 Arachis hypogaea HOM05D004528 ORTHO05D005815 5.8e-41 171.4 161 57.8
arahy.Tifrunner.gnm1.ann1.PT0GJ5 Arachis hypogaea HOM05D004528 ORTHO05D005815 5.8e-41 171.4 161 57.8
Glyma.17G055500 Glycine max HOM05D004528 ORTHO05D005815 5.8e-41 171.4 161 60.2
MBI01_g09956_MAGBIO Magnolia biondii HOM05D004528 ORTHO05D005815 1.3e-40 170.2 161 59.6
Nitab4.5_0011030g0010 Nicotiana tabacum HOM05D004528 ORTHO05D005815 1.3e-40 170.2 161 58.4
TAR626G1836 Trochodendron aralioides HOM05D004528 ORTHO05D005815 1.7e-40 169.9 161 58.4
Peaxi162Scf00709g00003 Petunia axillaris HOM05D004528 ORTHO05D005815 2.2e-40 169.5 160 59.4
ClCG11G001780 Citrullus lanatus HOM05D004528 ORTHO05D005815 2.9e-40 169.1 161 60.9
Lj4g0008156 Lotus japonicus HOM05D004528 ORTHO05D005815 3.7e-40 168.7 159 57.9
Aqoxy7G01232 Aquilegia oxysepala HOM05D004528 ORTHO05D005815 4.9e-40 168.3 161 57.1
EL10Ac8g19227 Beta vulgaris HOM05D004528 ORTHO05D005815 4.9e-40 168.3 161 60.2
AUR62027494 Chenopodium quinoa HOM05D004528 ORTHO05D005815 6.4e-40 167.9 161 59.6
AUR62033986 Chenopodium quinoa HOM05D004528 ORTHO05D005815 1.1e-39 167.2 161 59.0
Oeu018425.1 Olea europaea HOM05D004528 ORTHO05D005815 1.1e-39 167.2 160 62.5
Nitab4.5_0005634g0070 Nicotiana tabacum HOM05D004528 ORTHO05D005815 2.4e-39 166.0 161 57.1
PSO832G3660 Papaver somniferum HOM05D004528 ORTHO05D005815 2.4e-39 166.0 162 56.8
Sp2g03965 Schrenkiella parvula HOM05D004528 ORTHO05D005815 4.1e-39 165.2 115 75.7
PSO063G0639 Papaver somniferum HOM05D004528 ORTHO05D005815 5.4e-39 164.9 162 56.8
SHI24590 Sapria himalayana HOM05D004528 ORTHO05D005815 5.4e-39 164.9 153 61.4
TPR.G3725 Trifolium pratense HOM05D004528 ORTHO05D005815 2.0e-38 162.9 161 58.4
Ca_08460_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 2.7e-38 162.5 161 58.4
Psat3g072560 Pisum sativum HOM05D004528 ORTHO05D005815 2.7e-38 162.5 161 58.4
DCAR_011978 Daucus carota HOM05D004528 ORTHO05D005815 3.5e-38 162.2 160 58.1
Medtr7g091650 Medicago truncatula HOM05D004528 ORTHO05D005815 3.5e-38 162.2 161 59.6
Lsat_1_v5_gn_7_37341 Lactuca sativa HOM05D004528 ORTHO05D005815 1.0e-37 160.6 158 58.9
Nn6g35452 Nelumbo nucifera HOM05D004528 ORTHO05D005815 7.3e-36 154.5 143 58.0
HPP92_010492 Vanilla planifolia HOM05D004528 ORTHO05D005815 7.3e-36 154.5 162 54.9
HPP92_010493 Vanilla planifolia HOM05D004528 ORTHO05D005815 7.3e-36 154.5 162 54.9
A07p01200 Brassica napus HOM05D004528 ORTHO05D005815 1.1e-34 150.6 107 72.9
BcaB03g16690 Brassica carinata HOM05D004528 ORTHO05D005815 1.2e-30 137.1 105 68.6
MD15G1352000 Malus domestica HOM05D004528 ORTHO05D005815 3.5e-30 135.6 161 49.7
Sabra06G0171200 Salix brachista HOM05D004528 ORTHO05D005815 4.6e-30 135.2 161 54.7
SEGI_06455 Sequoiadendron giganteum HOM05D004528 ORTHO05D005815 1.0e-29 134.0 160 44.4
Os09g0386400 Oryza sativa ssp. japonica HOM05D004528 ORTHO05D005815 1.1e-23 114.0 160 43.8
CARHR054280 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.4e-23 113.6 72 81.9
arahy.Tifrunner.gnm1.ann1.43843R Arachis hypogaea HOM05D004528 ORTHO05D005815 1.2e-22 110.5 96 57.3
Mapoly0005s0151 Marchantia polymorpha HOM05D004528 ORTHO05D005815 3.5e-22 109.0 153 40.5
Oeu018237.1 Olea europaea HOM05D004528 ORTHO05D005815 6.6e-21 104.8 94 59.6
CDE02G2136 Ceratophyllum demersum HOM05D004528 ORTHO05D005815 1.1e-20 104.0 88 59.1
SMO117G0048 Selaginella moellendorffii HOM05D004528 ORTHO05D005815 2.5e-20 102.8 155 34.8
Ah.14g085220 Amaranthus hybridus HOM05D004528 ORTHO05D005815 3.6e-19 99.0 115 50.4
Pp3c17_12810 Physcomitrium patens HOM05D004528 ORTHO05D005815 6.2e-19 98.2 156 39.1
arahy.Tifrunner.gnm1.ann1.VVLB7Q Arachis hypogaea HOM05D004528 ORTHO05D005815 2.4e-18 96.3 77 62.3
ATR0026G011 Amborella trichopoda HOM05D004528 ORTHO05D005815 2.0e-17 93.2 100 49.0
AagrBONN_evm.TU.Sc2ySwM_344.906 Anthoceros agrestis HOM05D004528 ORTHO05D005815 2.9e-16 89.4 157 36.3
Rhsim05G0022000 Rhododendron simsii HOM05D004528 ORTHO05D005815 7.3e-12 74.7 59 62.7
arahy.Tifrunner.gnm1.ann1.DFU5EN Arachis hypogaea HOM05D004528 ORTHO05D005815 1.6e-11 73.6 58 62.1
Sopen12g027230 Solanum pennellii HOM05D004528 ORTHO05D051045 3.5e-06 55.8 41 58.5
CBR_g78884 Chara braunii HOM05D004528 ORTHO05D005815 6.0e-06 55.1 88 33.0


User provided reference genes

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