Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR035110 Cardamine hirsuta HOM05D005653 ORTHO05D007013 1.5e-25 118.6 55 100.0
CARHR027410 Cardamine hirsuta HOM05D005653 ORTHO05D007013 1.1e-09 65.9 54 61.1
Sp1g24170 Schrenkiella parvula HOM05D005653 ORTHO05D007013 1.5e-09 65.5 54 59.3
Carub.0001s2643 Capsella rubella HOM05D005653 ORTHO05D007013 1.9e-09 65.1 54 59.3
Thhalv10009378m.g Eutrema salsugineum HOM05D005653 ORTHO05D007013 1.9e-09 65.1 54 59.3
AL1G41470 Arabidopsis lyrata HOM05D005653 ORTHO05D007013 2.5e-09 64.7 54 59.3
AT1G27980 Arabidopsis thaliana HOM05D005653 ORTHO05D007013 4.3e-09 63.9 54 59.3
Psat3g188000 Pisum sativum HOM05D005653 ORTHO05D007013 4.3e-09 63.9 54 59.3
THA.LOC104820527 Tarenaya hassleriana HOM05D005653 ORTHO05D007013 4.3e-09 63.9 54 57.4
Aa31sc146G110 Aethionema arabicum HOM05D005653 ORTHO05D007013 9.7e-09 62.8 54 57.4
PGSC0003DMG400019810 Solanum tuberosum HOM05D005653 ORTHO05D007013 9.7e-09 62.8 54 59.3
ClCG06G002070 Citrullus lanatus HOM05D005653 ORTHO05D007013 1.3e-08 62.4 56 58.9
Ciclev10031168m.g Citrus clementina HOM05D005653 ORTHO05D007013 1.3e-08 62.4 54 55.6
Medtr7g022310 Medicago truncatula HOM05D005653 ORTHO05D007013 1.6e-08 62.0 54 57.4
arahy.Tifrunner.gnm1.ann1.8E8WMD Arachis hypogaea HOM05D005653 ORTHO05D007013 2.8e-08 61.2 54 57.4
arahy.Tifrunner.gnm1.ann1.K5AHSV Arachis hypogaea HOM05D005653 ORTHO05D007013 2.8e-08 61.2 54 57.4
Peaxi162Scf00128g01533 Petunia axillaris HOM05D005653 ORTHO05D007013 2.8e-08 61.2 54 57.4
CAN.G789.4 Capsicum annuum HOM05D005653 ORTHO05D007013 3.7e-08 60.8 54 57.4
CsaV3_6G008140 Cucumis sativus L. HOM05D005653 ORTHO05D007013 3.7e-08 60.8 54 53.7
RcHm_v2.0_Chr4g0429841 Rosa chinensis HOM05D005653 ORTHO05D007013 3.7e-08 60.8 54 55.6
VMungo1383G3612 Vigna mungo HOM05D005653 ORTHO05D007013 3.7e-08 60.8 54 57.4
A08p25960 Brassica napus HOM05D005653 ORTHO05D007013 4.8e-08 60.5 54 55.6
BolC3t19717H Brassica oleracea HOM05D005653 ORTHO05D007013 4.8e-08 60.5 54 55.6
BraA08t34547Z Brassica rapa HOM05D005653 ORTHO05D007013 4.8e-08 60.5 54 55.6
TPR.G2913 Trifolium pratense HOM05D005653 ORTHO05D007013 4.8e-08 60.5 54 55.6
CiPaw.05G107200 Carya illinoinensis HOM05D005653 ORTHO05D007013 6.3e-08 60.1 54 53.7
Ca_07130_v3 Cicer arietinum L. HOM05D005653 ORTHO05D007013 6.3e-08 60.1 54 55.6
MELO3C022321.2 Cucumis melo HOM05D005653 ORTHO05D007013 6.3e-08 60.1 54 53.7
Glyma.18G284300 Glycine max HOM05D005653 ORTHO05D007013 6.3e-08 60.1 54 55.6
TAR374G1158 Trochodendron aralioides HOM05D005653 ORTHO05D007013 6.3e-08 60.1 54 53.7
Atru.BG.292.p Acer truncatum HOM05D005653 ORTHO05D007013 8.2e-08 59.7 56 55.4
Atru.chr11.2357 Acer truncatum HOM05D005653 ORTHO05D007013 8.2e-08 59.7 56 55.4
Aqoxy5G03294 Aquilegia oxysepala HOM05D005653 ORTHO05D007013 8.2e-08 59.7 54 53.7
Phvul.008G017200 Phaseolus vulgaris HOM05D005653 ORTHO05D007013 8.2e-08 59.7 54 55.6
BcaC05g26610 Brassica carinata HOM05D005653 ORTHO05D007013 1.1e-07 59.3 54 53.7
C03p74690 Brassica napus HOM05D005653 ORTHO05D007013 1.1e-07 59.3 54 55.6
C05p26600 Brassica napus HOM05D005653 ORTHO05D007013 1.1e-07 59.3 54 53.7
CANSAT01G0083 Cannabis sativa HOM05D005653 ORTHO05D007013 1.1e-07 59.3 54 53.7
Eucgr.B03521 Eucalyptus grandis HOM05D005653 ORTHO05D007013 1.1e-07 59.3 54 53.7
FvH4_4g23470 Fragaria vesca HOM05D005653 ORTHO05D007013 1.1e-07 59.3 54 53.7
FAN07G0042 Fragaria x ananassa HOM05D005653 ORTHO05D007013 1.1e-07 59.3 54 53.7
FAN12G1333 Fragaria x ananassa HOM05D005653 ORTHO05D007013 1.1e-07 59.3 54 53.7
MBI11_g05337_MAGBIO Magnolia biondii HOM05D005653 ORTHO05D007013 1.1e-07 59.3 54 53.7
PSO478G2696 Papaver somniferum HOM05D005653 ORTHO05D007013 1.1e-07 59.3 54 51.9
SalBow2G0115 Salvia bowleyana HOM05D005653 ORTHO05D007013 1.1e-07 59.3 54 55.6
QL03p051746 Quercus lobata HOM05D005653 ORTHO05D007013 1.4e-07 58.9 54 55.6
Solyc05g015860.4 Solanum lycopersicum HOM05D005653 ORTHO05D007013 1.4e-07 58.9 54 55.6
Sopen05g011500 Solanum pennellii HOM05D005653 ORTHO05D007013 1.4e-07 58.9 54 55.6
SGA_v2.0_scaffold46G17389 Striga asiatica HOM05D005653 ORTHO05D007013 1.4e-07 58.9 54 57.4
Nitab4.5_0000340g0070 Nicotiana tabacum HOM05D005653 ORTHO05D007013 1.8e-07 58.5 54 57.4
TWI18G0855 Tripterygium wilfordii HOM05D005653 ORTHO05D007013 1.8e-07 58.5 54 55.6
PGR102G3026 Punica granatum HOM05D005653 ORTHO05D007013 2.4e-07 58.2 54 55.6
Sed0008245 Sechium edule HOM05D005653 ORTHO05D007013 2.4e-07 58.2 54 51.9
Prupe.1G222900 Prunus persica HOM05D005653 ORTHO05D007013 3.1e-07 57.8 54 53.7
Thecc.02G202100 Theobroma cacao HOM05D005653 ORTHO05D007013 3.1e-07 57.8 54 55.6
Nn4g22260 Nelumbo nucifera HOM05D005653 ORTHO05D007013 4.1e-07 57.4 54 50.0
Cfa009387 Carpinus fangiana HOM05D005653 ORTHO05D007013 5.3e-07 57.0 54 53.7
Glyma.02G097200 Glycine max HOM05D005653 ORTHO05D007013 5.3e-07 57.0 54 51.9
MD13G1122300 Malus domestica HOM05D005653 ORTHO05D007013 5.3e-07 57.0 54 51.9
Manes.12G008600 Manihot esculenta HOM05D005653 ORTHO05D007013 5.3e-07 57.0 54 51.9
PSO017G4941 Papaver somniferum HOM05D005653 ORTHO05D007013 5.3e-07 57.0 54 50.0
Haze_12446 Corylus avellana HOM05D005653 ORTHO05D007013 6.9e-07 56.6 54 53.7
ECA233G0831 Erigeron canadensis HOM05D005653 ORTHO05D007013 6.9e-07 56.6 54 53.7
HanXRQChr08g0209781 Helianthus annuus HOM05D005653 ORTHO05D007013 6.9e-07 56.6 54 53.7
Lj1g0002640 Lotus japonicus HOM05D005653 ORTHO05D007013 6.9e-07 56.6 54 51.9
vmacro16096 Vaccinium macrocarpon HOM05D005653 ORTHO05D007013 6.9e-07 56.6 54 51.9
Lalb_Chr10g0092041 Lupinus albus HOM05D005653 ORTHO05D007013 9.0e-07 56.2 54 51.9
SEGI_37890 Sequoiadendron giganteum HOM05D005653 ORTHO05D007013 9.0e-07 56.2 54 51.9
CDE05G3552 Ceratophyllum demersum HOM05D005653 ORTHO05D007013 1.2e-06 55.8 54 48.1
Duzib268G1459 Durio zibethinus HOM05D005653 ORTHO05D007013 1.5e-06 55.5 54 53.7
Gohir.D01G100300 Gossypium hirsutum HOM05D005653 ORTHO05D007013 2.0e-06 55.1 54 53.7
Gorai.002G181300 Gossypium raimondii HOM05D005653 ORTHO05D007013 2.0e-06 55.1 54 53.7
AUR62005648 Chenopodium quinoa HOM05D005653 ORTHO05D007013 2.6e-06 54.7 54 50.0
AUR62028902 Chenopodium quinoa HOM05D005653 ORTHO05D007013 2.6e-06 54.7 54 50.0
COL.COLO4_05008 Corchorus olitorius HOM05D005653 ORTHO05D007013 2.6e-06 54.7 54 51.9
DCAR_024662 Daucus carota HOM05D005653 ORTHO05D007013 2.6e-06 54.7 54 50.0
Lsat_1_v5_gn_8_147520 Lactuca sativa HOM05D005653 ORTHO05D007013 2.6e-06 54.7 54 51.9
Rhsim12G0094700 Rhododendron simsii HOM05D005653 ORTHO05D007013 3.4e-06 54.3 54 51.9
Cc11_g17180 Coffea canephora HOM05D005653 ORTHO05D007013 4.5e-06 53.9 54 50.0
Dinv17587 Davidia involucrata HOM05D005653 ORTHO05D007013 4.5e-06 53.9 54 48.1
Migut.K01002 Erythranthe guttata HOM05D005653 ORTHO05D007013 5.9e-06 53.5 54 53.7
Gohir.A01G153900 Gossypium hirsutum HOM05D005653 ORTHO05D007013 5.9e-06 53.5 54 51.9
Sabra01G0042500 Salix brachista HOM05D005653 ORTHO05D007013 5.9e-06 53.5 54 53.7
ATR0561G119 Amborella trichopoda HOM05D005653 ORTHO05D007013 1.0e-05 52.8 54 50.0
GSVIVG01010526001 Vitis vinifera HOM05D005653 ORTHO05D007013 1.0e-05 52.8 54 50.0


User provided reference genes

Program Settings