Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR021960 Cardamine hirsuta HOM05D006408 ORTHO05D008038 2.2e-185 652.1 330 100.0
Sp1g19130 Schrenkiella parvula HOM05D006408 ORTHO05D008038 6.5e-177 624.0 333 94.9
AL1G34740 Arabidopsis lyrata HOM05D006408 ORTHO05D008038 1.4e-171 606.3 330 92.7
Aa31LG7G5580 Aethionema arabicum HOM05D006408 ORTHO05D008038 1.2e-165 586.6 353 86.1
A06p17690 Brassica napus HOM05D006408 ORTHO05D008038 5.9e-162 574.3 335 87.8
C05p20590 Brassica napus HOM05D006408 ORTHO05D008038 5.9e-162 574.3 335 88.1
BolC5t30757H Brassica oleracea HOM05D006408 ORTHO05D008038 5.9e-162 574.3 335 88.1
BraA06t24861Z Brassica rapa HOM05D006408 ORTHO05D008038 5.9e-162 574.3 335 87.8
AT1G21600 Arabidopsis thaliana HOM05D006408 ORTHO05D008038 9.5e-160 567.0 330 87.9
BcaC05g26077 Brassica carinata HOM05D006408 ORTHO05D008038 9.8e-149 530.4 335 82.7
Carub.0001s2103 Capsella rubella HOM05D006408 ORTHO05D008038 1.0e-145 520.4 330 82.7
THA.LOC104814021 Tarenaya hassleriana HOM05D006408 ORTHO05D008038 1.5e-141 506.5 278 88.1
Cpa.g.sc26.317 Carica papaya HOM05D006408 ORTHO05D008038 3.4e-141 505.4 330 77.9
BcaB07g32155 Brassica carinata HOM05D006408 ORTHO05D008038 6.4e-140 501.1 334 79.3
Cfa018129 Carpinus fangiana HOM05D006408 ORTHO05D008038 3.5e-138 495.4 320 77.8
TAR628G0457 Trochodendron aralioides HOM05D006408 ORTHO05D008038 4.0e-134 481.9 323 75.9
CiPaw.16G022700 Carya illinoinensis HOM05D006408 ORTHO05D008038 1.2e-133 480.3 327 75.5
MELO3C010512.2 Cucumis melo HOM05D006408 ORTHO05D008038 1.2e-133 480.3 322 75.5
Manes.02G168400 Manihot esculenta HOM05D006408 ORTHO05D008038 1.5e-133 479.9 334 73.4
PGR083G0137 Punica granatum HOM05D006408 ORTHO05D008038 4.4e-133 478.4 280 83.2
CsaV3_4G028270 Cucumis sativus L. HOM05D006408 ORTHO05D008038 9.9e-133 477.2 277 81.9
CANSAT25G1301 Cannabis sativa HOM05D006408 ORTHO05D008038 2.2e-132 476.1 326 73.3
ClCG11G015980 Citrullus lanatus HOM05D006408 ORTHO05D008038 2.9e-132 475.7 324 74.1
Thhalv10007813m.g Eutrema salsugineum HOM05D006408 ORTHO05D008038 6.4e-132 474.6 264 92.0
RcHm_v2.0_Chr6g0296711 Rosa chinensis HOM05D006408 ORTHO05D008038 5.4e-131 471.5 322 72.7
PSO170G2303 Papaver somniferum HOM05D006408 ORTHO05D008038 2.7e-130 469.2 307 75.9
Thecc.08G133100 Theobroma cacao HOM05D006408 ORTHO05D008038 2.7e-130 469.2 317 75.1
Prupe.1G489500 Prunus persica HOM05D006408 ORTHO05D008038 3.5e-130 468.8 279 79.9
Gorai.005G087700 Gossypium raimondii HOM05D006408 ORTHO05D008038 6.0e-130 468.0 335 72.5
EL10Ac1g01346 Beta vulgaris HOM05D006408 ORTHO05D008038 1.0e-129 467.2 323 73.7
Aqoxy5G02393 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 3.0e-129 465.7 332 72.9
PSO017G3385 Papaver somniferum HOM05D006408 ORTHO05D008038 3.9e-129 465.3 310 75.2
MD08G1159400 Malus domestica HOM05D006408 ORTHO05D008038 5.6e-128 461.5 293 76.5
Nitab4.5_0001168g0170 Nicotiana tabacum HOM05D006408 ORTHO05D008038 9.5e-128 460.7 323 71.8
Atru.chr13.1568 Acer truncatum HOM05D006408 ORTHO05D008038 2.8e-127 459.1 329 71.7
Eucgr.A00239 Eucalyptus grandis HOM05D006408 ORTHO05D008038 3.6e-127 458.8 334 72.8
CAN.G288.5 Capsicum annuum HOM05D006408 ORTHO05D008038 6.2e-127 458.0 320 71.9
Sopen04g025710 Solanum pennellii HOM05D006408 ORTHO05D008038 1.1e-126 457.2 327 72.2
MBI03_g48069_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 2.4e-126 456.1 328 72.3
Solyc04g057870.3 Solanum lycopersicum HOM05D006408 ORTHO05D008038 3.1e-126 455.7 327 71.9
Nn1g08961 Nelumbo nucifera HOM05D006408 ORTHO05D008038 4.0e-126 455.3 328 71.3
Ca_16607_v3 Cicer arietinum L. HOM05D006408 ORTHO05D008038 5.2e-126 454.9 336 69.9
Glyma.04G087000 Glycine max HOM05D006408 ORTHO05D008038 7.6e-125 451.1 280 75.7
Peaxi162Scf00066g00222 Petunia axillaris HOM05D006408 ORTHO05D008038 1.7e-124 449.9 324 71.0
Potri.002G078900 Populus trichocarpa HOM05D006408 ORTHO05D008038 2.9e-124 449.1 326 70.9
CDE06G0572 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 6.4e-124 448.0 302 73.2
FAN20G2488 Fragaria x ananassa HOM05D006408 ORTHO05D008038 6.4e-124 448.0 322 69.6
Glyma.06G117500 Glycine max HOM05D006408 ORTHO05D008038 1.2e-122 443.7 284 73.6
CSS0036755 Camellia sinensis var. sinensis HOM05D006408 ORTHO05D008038 1.6e-122 443.4 253 85.8
FAN27G1901 Fragaria x ananassa HOM05D006408 ORTHO05D008038 2.1e-122 443.0 323 70.3
FAN24G2159 Fragaria x ananassa HOM05D006408 ORTHO05D008038 3.5e-122 442.2 323 70.6
Psat5g084760 Pisum sativum HOM05D006408 ORTHO05D008038 1.3e-121 440.3 313 70.3
Phvul.009G129900 Phaseolus vulgaris HOM05D006408 ORTHO05D008038 2.3e-121 439.5 295 72.2
arahy.Tifrunner.gnm1.ann1.227FW7 Arachis hypogaea HOM05D006408 ORTHO05D008038 1.1e-120 437.2 328 68.9
arahy.Tifrunner.gnm1.ann1.8X384Y Arachis hypogaea HOM05D006408 ORTHO05D008038 1.1e-120 437.2 329 68.7
DCAR_003587 Daucus carota HOM05D006408 ORTHO05D008038 1.5e-120 436.8 261 81.2
Medtr3g088605 Medicago truncatula HOM05D006408 ORTHO05D008038 2.5e-120 436.0 329 66.9
VMungo1309G0712 Vigna mungo HOM05D006408 ORTHO05D008038 2.5e-120 436.0 320 67.5
PGSC0003DMG400028061 Solanum tuberosum HOM05D006408 ORTHO05D008038 7.3e-120 434.5 322 70.2
unitig_52.g17545 Utricularia gibba HOM05D006408 ORTHO05D008038 3.6e-119 432.2 278 75.2
Actinidia15213 Actinidia chinensis HOM05D006408 ORTHO05D008038 1.4e-118 430.3 315 72.7
BolC8t49731H Brassica oleracea HOM05D006408 ORTHO05D008038 2.4e-118 429.5 341 69.5
CDE04G0676 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 4.0e-118 428.7 308 70.5
ATR0568G086 Amborella trichopoda HOM05D006408 ORTHO05D008038 5.3e-118 428.3 277 75.1
Hma1.2p1_1121F.1_g259280 Hydrangea macrophylla HOM05D006408 ORTHO05D008038 5.3e-118 428.3 278 77.3
Sed0021255 Sechium edule HOM05D006408 ORTHO05D008038 1.2e-117 427.2 277 75.5
Lalb_Chr08g0241101 Lupinus albus HOM05D006408 ORTHO05D008038 1.5e-117 426.8 328 66.8
TPR.G28811 Trifolium pratense HOM05D006408 ORTHO05D008038 2.0e-117 426.4 332 66.0
FAN15G0171 Fragaria x ananassa HOM05D006408 ORTHO05D008038 8.4e-116 421.0 253 79.4
Ciclev10001886m.g Citrus clementina HOM05D006408 ORTHO05D008038 5.4e-115 418.3 324 67.6
Oeu047179.2 Olea europaea HOM05D006408 ORTHO05D008038 2.1e-114 416.4 228 85.5
GSVIVG01008807001 Vitis vinifera HOM05D006408 ORTHO05D008038 2.7e-114 416.0 221 88.7
HPP92_009911 Vanilla planifolia HOM05D006408 ORTHO05D008038 3.5e-114 415.6 284 72.2
MSTRG.22398 Avicennia marina HOM05D006408 ORTHO05D008038 6.0e-114 414.8 275 74.5
Gohir.D02G078200 Gossypium hirsutum HOM05D006408 ORTHO05D008038 1.7e-113 413.3 335 66.0
HanXRQChr02g0045521 Helianthus annuus HOM05D006408 ORTHO05D008038 1.7e-113 413.3 280 73.9
Lj4A682G50 Lonicera japonica HOM05D006408 ORTHO05D008038 1.7e-113 413.3 248 80.6
QL09p032485 Quercus lobata HOM05D006408 ORTHO05D008038 8.7e-113 411.0 223 87.4
Cc10_g13760 Coffea canephora HOM05D006408 ORTHO05D008038 9.6e-112 407.5 328 64.9
A08p28910 Brassica napus HOM05D006408 ORTHO05D008038 3.6e-111 405.6 206 95.6
Migut.N03260 Erythranthe guttata HOM05D006408 ORTHO05D008038 4.8e-111 405.2 232 82.3
Lj1g0002290 Lotus japonicus HOM05D006408 ORTHO05D008038 1.4e-110 403.7 317 66.6
FvH4_2g27850 Fragaria vesca HOM05D006408 ORTHO05D008038 9.0e-110 401.0 227 82.4
ECA236G3303 Erigeron canadensis HOM05D006408 ORTHO05D008038 1.9e-107 393.3 322 64.0
Ah.10g032560 Amaranthus hybridus HOM05D006408 ORTHO05D008038 3.2e-107 392.5 275 71.6
Lsat_1_v5_gn_1_7780 Lactuca sativa HOM05D006408 ORTHO05D008038 7.1e-107 391.3 245 78.0
Gohir.A02G071000 Gossypium hirsutum HOM05D006408 ORTHO05D008038 1.3e-95 354.0 325 60.0
AUR62007717 Chenopodium quinoa HOM05D006408 ORTHO05D008038 1.6e-95 353.6 323 61.0
Hund17341 Selenicereus undatus HOM05D006408 ORTHO05D008038 1.6e-95 353.6 284 66.5
AUR62013426 Chenopodium quinoa HOM05D006408 ORTHO05D008038 3.7e-95 352.4 315 61.6
C08p20930 Brassica napus HOM05D006408 ORTHO05D008038 1.8e-94 350.1 263 72.2
Nitab4.5_0003978g0010 Nicotiana tabacum HOM05D006408 ORTHO05D008038 4.0e-94 349.0 256 70.3
Os12g0110400 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 2.0e-93 346.7 227 71.8
Os11g0110100 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 2.6e-93 346.3 234 70.1
SGA_v2.0_scaffold25G11139 Striga asiatica HOM05D006408 ORTHO05D008038 1.3e-92 344.0 364 53.8
Zm00001eb195160 Zea mays HOM05D006408 ORTHO05D008038 3.8e-92 342.4 302 57.9
Sc26g0002930 Simmondsia chinensis HOM05D006408 ORTHO05D008038 1.1e-86 324.3 254 68.5
Rhsim06G0091400 Rhododendron simsii HOM05D006408 ORTHO05D008038 4.1e-86 322.4 454 44.7
SEGI_15088 Sequoiadendron giganteum HOM05D006408 ORTHO05D008038 6.7e-81 305.1 220 62.3
BraA08t34821Z Brassica rapa HOM05D006408 ORTHO05D008038 8.5e-76 288.1 255 64.3
Duzib093G1884 Durio zibethinus HOM05D006408 ORTHO05D008038 1.4e-73 280.8 224 64.7
Mapoly0008s0219 Marchantia polymorpha HOM05D006408 ORTHO05D008038 1.4e-73 280.8 325 46.5
vmacro20822 Vaccinium macrocarpon HOM05D006408 ORTHO05D008038 1.4e-73 280.8 167 80.8
Pp3c1_1000 Physcomitrium patens HOM05D006408 ORTHO05D008038 1.5e-72 277.3 286 51.0
CsaV3_5G019980 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.0e-68 264.6 220 61.8
COL.COLO4_06961 Corchorus olitorius HOM05D006408 ORTHO05D008038 6.7e-65 251.9 195 65.6
CsaV3_UNG224650 Cucumis sativus L. HOM05D006408 ORTHO05D008038 3.7e-63 246.1 213 60.6
SMO146G0302 Selaginella moellendorffii HOM05D006408 ORTHO05D008038 2.7e-58 229.9 205 53.7
SalBow2G2951 Salvia bowleyana HOM05D006408 ORTHO05D008038 4.0e-57 226.1 117 85.5
Dinv14691 Davidia involucrata HOM05D006408 ORTHO05D008038 6.8e-57 225.3 134 83.6
MBI03_g28486_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 3.4e-56 223.0 248 55.2
MBI03_g39652_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 3.4e-48 196.4 161 65.8
Sabra02G0061800 Salix brachista HOM05D006408 ORTHO05D008038 5.4e-38 162.5 96 78.1
Aqoxy219s001 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 2.0e-37 160.6 109 73.4
CBR_g40143 Chara braunii HOM05D006408 ORTHO05D008038 1.7e-28 131.0 366 27.0
BolC5t30909H Brassica oleracea HOM05D006408 ORTHO05D008038 3.0e-28 130.2 62 96.8
CsaV3_5G018920 Cucumis sativus L. HOM05D006408 ORTHO05D008038 8.6e-28 128.6 111 59.5
AagrBONN_evm.TU.Sc2ySwM_344.4901 Anthoceros agrestis HOM05D006408 ORTHO05D008038 1.6e-21 107.8 151 43.0
A08p28900 Brassica napus HOM05D006408 ORTHO05D008038 1.6e-13 81.3 55 83.6
Actinidia21278 Actinidia chinensis HOM05D006408 ORTHO05D008038 1.0e-12 78.6 48 77.1
MBI14_g28586_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 2.3e-12 77.4 43 86.0
CsaV3_UNG111870 Cucumis sativus L. HOM05D006408 ORTHO05D008038 4.0e-09 66.6 82 46.3
CsaV3_UNG115880 Cucumis sativus L. HOM05D006408 ORTHO05D008038 4.0e-09 66.6 82 46.3
Actinidia21279 Actinidia chinensis HOM05D006408 ORTHO05D008038 7.6e-08 62.4 105 41.9
CsaV3_5G018930 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.7e-07 61.2 56 57.1


User provided reference genes

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