Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G2663 Cannabis sativa HOM05D004689 ORTHO05D006269 2.3e-161 572.4 336 100.0
QL03p020097 Quercus lobata HOM05D004689 ORTHO05D006269 5.5e-131 471.5 354 80.5
FAN02G2373 Fragaria x ananassa HOM05D004689 ORTHO05D006269 3.6e-130 468.8 269 90.7
FAN14G4883 Fragaria x ananassa HOM05D004689 ORTHO05D006269 3.6e-130 468.8 269 90.7
arahy.Tifrunner.gnm1.ann1.0YCB9L Arachis hypogaea HOM05D004689 ORTHO05D006269 1.0e-129 467.2 268 89.6
arahy.Tifrunner.gnm1.ann1.98D3Z3 Arachis hypogaea HOM05D004689 ORTHO05D006269 1.0e-129 467.2 268 89.6
Cfa021476 Carpinus fangiana HOM05D004689 ORTHO05D006269 5.2e-129 464.9 356 80.3
VMungo0917G0001 Vigna mungo HOM05D004689 ORTHO05D006269 6.7e-129 464.5 269 89.6
FAN05G0091 Fragaria x ananassa HOM05D004689 ORTHO05D006269 7.4e-128 461.1 278 87.8
FAN05G3347 Fragaria x ananassa HOM05D004689 ORTHO05D006269 7.4e-128 461.1 278 87.8
Phvul.005G180000 Phaseolus vulgaris HOM05D004689 ORTHO05D006269 1.7e-127 459.9 269 88.5
TAR369G0565 Trochodendron aralioides HOM05D004689 ORTHO05D006269 1.7e-127 459.9 361 74.0
CiPaw.10G001700 Carya illinoinensis HOM05D004689 ORTHO05D006269 2.8e-127 459.1 354 81.6
Glyma.13G367400 Glycine max HOM05D004689 ORTHO05D006269 2.8e-127 459.1 269 88.1
Glyma.15G005900 Glycine max HOM05D004689 ORTHO05D006269 1.4e-126 456.8 349 81.1
TAR633G1835 Trochodendron aralioides HOM05D004689 ORTHO05D006269 1.4e-126 456.8 361 73.7
Ca_23152_v3 Cicer arietinum L. HOM05D004689 ORTHO05D006269 9.1e-126 454.1 266 88.7
Lalb_Chr04g0254861 Lupinus albus HOM05D004689 ORTHO05D006269 9.1e-126 454.1 266 88.3
Medtr8g009970 Medicago truncatula HOM05D004689 ORTHO05D006269 9.1e-126 454.1 270 87.4
GSVIVG01033687001 Vitis vinifera HOM05D004689 ORTHO05D006269 1.6e-125 453.4 237 94.1
CsaV3_3G036230 Cucumis sativus L. HOM05D004689 ORTHO05D006269 3.5e-125 452.2 240 93.3
TPR.G17360 Trifolium pratense HOM05D004689 ORTHO05D006269 5.0e-124 448.4 271 87.1
Prupe.7G125300 Prunus persica HOM05D004689 ORTHO05D006269 8.5e-124 447.6 239 93.3
MSTRG.19190 Avicennia marina HOM05D004689 ORTHO05D006269 1.1e-123 447.2 239 91.6
EL10Ac7g16690 Beta vulgaris HOM05D004689 ORTHO05D006269 2.5e-123 446.0 263 87.5
CSS0004382 Camellia sinensis var. sinensis HOM05D004689 ORTHO05D006269 3.2e-123 445.7 240 91.7
CSS0024828 Camellia sinensis var. sinensis HOM05D004689 ORTHO05D006269 3.2e-123 445.7 240 91.7
AUR62026953 Chenopodium quinoa HOM05D004689 ORTHO05D006269 4.2e-123 445.3 239 91.6
RcHm_v2.0_Chr7g0191101 Rosa chinensis HOM05D004689 ORTHO05D006269 4.2e-123 445.3 351 74.1
Atru.chr8.1747 Acer truncatum HOM05D004689 ORTHO05D006269 9.4e-123 444.1 274 85.8
Sed0022535 Sechium edule HOM05D004689 ORTHO05D006269 9.4e-123 444.1 235 93.6
MELO3C009381.2 Cucumis melo HOM05D004689 ORTHO05D006269 1.2e-122 443.7 249 90.0
ECA238G3499 Erigeron canadensis HOM05D004689 ORTHO05D006269 2.1e-122 443.0 260 88.5
PGSC0003DMG400003874 Solanum tuberosum HOM05D004689 ORTHO05D006269 2.1e-122 443.0 261 85.1
FAN09G4523 Fragaria x ananassa HOM05D004689 ORTHO05D006269 2.7e-122 442.6 254 89.0
Lalb_Chr10g0099851 Lupinus albus HOM05D004689 ORTHO05D006269 3.6e-122 442.2 257 86.8
Actinidia32476 Actinidia chinensis HOM05D004689 ORTHO05D006269 8.0e-122 441.0 267 86.9
DCAR_020804 Daucus carota HOM05D004689 ORTHO05D006269 8.0e-122 441.0 239 91.2
Lj3g0015942 Lotus japonicus HOM05D004689 ORTHO05D006269 8.0e-122 441.0 240 90.4
Ciclev10012150m.g Citrus clementina HOM05D004689 ORTHO05D006269 1.0e-121 440.7 231 93.9
Ah.15g091430 Amaranthus hybridus HOM05D004689 ORTHO05D006269 3.0e-121 439.1 239 91.2
TWI74G0641 Tripterygium wilfordii HOM05D004689 ORTHO05D006269 3.0e-121 439.1 331 80.7
Nn6g35217 Nelumbo nucifera HOM05D004689 ORTHO05D006269 4.0e-121 438.7 355 73.8
Lsat_1_v5_gn_1_52460 Lactuca sativa HOM05D004689 ORTHO05D006269 5.2e-121 438.3 235 91.9
Solyc09g008470.4 Solanum lycopersicum HOM05D004689 ORTHO05D006269 8.8e-121 437.6 240 89.6
Sopen09g003300 Solanum pennellii HOM05D004689 ORTHO05D006269 1.5e-120 436.8 240 89.6
Ah.08g211440 Amaranthus hybridus HOM05D004689 ORTHO05D006269 4.4e-120 435.3 239 90.4
RhsimUnG0004400 Rhododendron simsii HOM05D004689 ORTHO05D006269 9.7e-120 434.1 270 85.6
RhsimUnG0067800 Rhododendron simsii HOM05D004689 ORTHO05D006269 9.7e-120 434.1 270 85.6
PSO675G8307 Papaver somniferum HOM05D004689 ORTHO05D006269 1.3e-119 433.7 241 88.8
Peaxi162Scf00407g00631 Petunia axillaris HOM05D004689 ORTHO05D006269 2.8e-119 432.6 254 88.2
Sc20g0005690 Simmondsia chinensis HOM05D004689 ORTHO05D006269 4.8e-119 431.8 240 90.8
SGA_v2.0_scaffold40G15470 Striga asiatica HOM05D004689 ORTHO05D006269 4.8e-119 431.8 240 90.0
unitig_26.g9238 Utricularia gibba HOM05D004689 ORTHO05D006269 6.3e-119 431.4 239 90.0
PSO541G4270 Papaver somniferum HOM05D004689 ORTHO05D006269 1.1e-118 430.6 240 88.8
Eucgr.K02436 Eucalyptus grandis HOM05D004689 ORTHO05D006269 2.4e-118 429.5 222 95.0
Aqoxy2G01650 Aquilegia oxysepala HOM05D004689 ORTHO05D006269 4.1e-118 428.7 221 94.6
Duzib128G1555 Durio zibethinus HOM05D004689 ORTHO05D006269 7.0e-118 427.9 330 76.1
Gohir.D09G140400 Gossypium hirsutum HOM05D004689 ORTHO05D006269 9.1e-118 427.6 233 91.0
Gorai.006G161000 Gossypium raimondii HOM05D004689 ORTHO05D006269 9.1e-118 427.6 233 91.0
CDE06G0795 Ceratophyllum demersum HOM05D004689 ORTHO05D006269 1.6e-117 426.8 242 89.3
CDE03G0163 Ceratophyllum demersum HOM05D004689 ORTHO05D006269 2.0e-117 426.4 242 88.8
PGR119G0162 Punica granatum HOM05D004689 ORTHO05D006269 2.7e-117 426.0 222 93.7
Hund19382 Selenicereus undatus HOM05D004689 ORTHO05D006269 2.7e-117 426.0 241 89.6
Potri.006G121300 Populus trichocarpa HOM05D004689 ORTHO05D006269 3.5e-117 425.6 238 89.5
RcHm_v2.0_Chr3g0470901 Rosa chinensis HOM05D004689 ORTHO05D006269 4.5e-117 425.2 220 95.0
Gohir.A09G144600 Gossypium hirsutum HOM05D004689 ORTHO05D006269 7.7e-117 424.5 233 90.6
ClCG10G019870 Citrullus lanatus HOM05D004689 ORTHO05D006269 1.0e-116 424.1 257 84.8
Potri.016G097600 Populus trichocarpa HOM05D004689 ORTHO05D006269 1.3e-116 423.7 344 73.3
Migut.J00456 Erythranthe guttata HOM05D004689 ORTHO05D006269 1.7e-116 423.3 241 88.4
Oeu042111.1 Olea europaea HOM05D004689 ORTHO05D006269 2.9e-116 422.5 265 83.4
Hma1.2p1_0225F.1_g095000 Hydrangea macrophylla HOM05D004689 ORTHO05D006269 1.9e-115 419.9 224 91.5
Thecc.05G071600 Theobroma cacao HOM05D004689 ORTHO05D006269 3.2e-115 419.1 222 92.8
Thecc.05G071900 Theobroma cacao HOM05D004689 ORTHO05D006269 3.2e-115 419.1 222 92.8
COL.COLO4_26909 Corchorus olitorius HOM05D004689 ORTHO05D006269 1.2e-114 417.2 220 93.2
Nitab4.5_0003314g0100 Nicotiana tabacum HOM05D004689 ORTHO05D006269 1.6e-114 416.8 219 92.2
HanXRQChr13g0402661 Helianthus annuus HOM05D004689 ORTHO05D006269 2.7e-114 416.0 221 91.4
THA.LOC104816037 Tarenaya hassleriana HOM05D004689 ORTHO05D006269 4.7e-114 415.2 228 89.0
MD12G1106500 Malus domestica HOM05D004689 ORTHO05D006269 6.1e-114 414.8 239 87.9
Aa31LG5G4730 Aethionema arabicum HOM05D004689 ORTHO05D006269 8.0e-114 414.5 257 84.0
CARHR126450 Cardamine hirsuta HOM05D004689 ORTHO05D006269 1.0e-113 414.1 228 88.6
Zm00001eb398100 Zea mays HOM05D004689 ORTHO05D006269 1.7e-111 406.8 241 83.4
Carub.0004s1393 Capsella rubella HOM05D004689 ORTHO05D006269 2.2e-111 406.4 228 87.7
AL4G28000 Arabidopsis lyrata HOM05D004689 ORTHO05D006269 2.8e-111 406.0 228 87.3
Sp4g14930 Schrenkiella parvula HOM05D004689 ORTHO05D006269 3.7e-111 405.6 230 87.0
Lj3C990G15 Lonicera japonica HOM05D004689 ORTHO05D006269 4.8e-111 405.2 218 91.7
HPP92_017214 Vanilla planifolia HOM05D004689 ORTHO05D006269 8.3e-111 404.4 232 86.6
AT2G32600 Arabidopsis thaliana HOM05D004689 ORTHO05D006269 1.4e-110 403.7 228 86.8
C04p17070 Brassica napus HOM05D004689 ORTHO05D006269 3.5e-109 399.1 228 85.1
BolC4t23259H Brassica oleracea HOM05D004689 ORTHO05D006269 3.5e-109 399.1 228 85.1
A05p13300 Brassica napus HOM05D004689 ORTHO05D006269 4.5e-109 398.7 228 85.1
BraA05t20271Z Brassica rapa HOM05D004689 ORTHO05D006269 4.5e-109 398.7 228 85.1
AagrBONN_evm.TU.Sc2ySwM_344.454 Anthoceros agrestis HOM05D004689 ORTHO05D006269 2.3e-108 396.4 232 87.1
Thhalv10017051m.g Eutrema salsugineum HOM05D004689 ORTHO05D006269 2.9e-108 396.0 228 85.5
Zm00001eb011590 Zea mays HOM05D004689 ORTHO05D006269 2.9e-108 396.0 241 82.6
Cc06_g04560 Coffea canephora HOM05D004689 ORTHO05D006269 3.8e-108 395.6 404 63.4
Pp3c15_8160 Physcomitrium patens HOM05D004689 ORTHO05D006269 3.8e-108 395.6 260 82.3
Mapoly0069s0004 Marchantia polymorpha HOM05D004689 ORTHO05D006269 1.9e-107 393.3 225 87.1
Sabra06G0095500 Salix brachista HOM05D004689 ORTHO05D006269 4.2e-107 392.1 417 61.6
Pp3c9_13030 Physcomitrium patens HOM05D004689 ORTHO05D006269 4.7e-106 388.7 254 78.7
Os03g0263500 Oryza sativa ssp. japonica HOM05D004689 ORTHO05D006269 1.2e-104 384.0 232 80.6
CBR_g54837 Chara braunii HOM05D004689 ORTHO05D006269 9.8e-104 380.9 258 76.7
MD04G1088800 Malus domestica HOM05D004689 ORTHO05D006269 1.7e-103 380.2 208 91.8
SMO228G0117 Selaginella moellendorffii HOM05D004689 ORTHO05D006269 1.3e-100 370.5 239 78.7
CAN.G1038.16 Capsicum annuum HOM05D004689 ORTHO05D006269 5.2e-97 358.6 221 85.1
Carub.0007s3257 Capsella rubella HOM05D004689 ORTHO05D006269 2.3e-92 343.2 241 73.4
AagrBONN_evm.TU.Sc2ySwM_344.3364 Anthoceros agrestis HOM05D004689 ORTHO05D006269 4.7e-90 335.5 181 92.3
Psat1g060440 Pisum sativum HOM05D004689 ORTHO05D006269 1.1e-89 334.3 342 55.6
MCO12G316 Micromonas commoda HOM05D004689 ORTHO05D006269 1.3e-87 327.4 240 70.8
Cre06.g252700 Chlamydomonas reinhardtii HOM05D004689 ORTHO05D006269 3.7e-87 325.9 228 72.8
Prupe.4G071900 Prunus persica HOM05D004689 ORTHO05D006269 1.1e-86 324.3 228 74.6
Manes.09G064318 Manihot esculenta HOM05D004689 ORTHO05D006269 5.4e-86 322.0 176 92.0
vmacro08797 Vaccinium macrocarpon HOM05D004689 ORTHO05D006269 1.1e-81 307.8 569 38.3
Cpa.g.sc87.109 Carica papaya HOM05D004689 ORTHO05D006269 4.9e-79 298.9 259 66.0
FvH4_6g16880 Fragaria vesca HOM05D004689 ORTHO05D006269 8.3e-79 298.1 212 78.8
SHI12393 Sapria himalayana HOM05D004689 ORTHO05D006269 3.5e-77 292.7 247 67.2
PRCOL_00004335 Prasinoderma coloniale HOM05D004689 ORTHO05D006269 3.3e-75 286.2 219 64.4
Psat6g037120 Pisum sativum HOM05D005082 ORTHO05D006474 2.8e-74 283.1 207 72.5
Haze_26764 Corylus avellana HOM05D004689 ORTHO05D006269 1.3e-71 274.2 189 73.0
Dinv35815 Davidia involucrata HOM05D004689 ORTHO05D006269 2.1e-69 266.9 150 86.7
Haze_19437 Corylus avellana HOM05D004689 ORTHO05D006269 9.0e-65 251.5 249 73.1
Dinv37340 Davidia involucrata HOM05D004689 ORTHO05D006269 9.9e-64 248.1 132 91.7
AUR62043425 Chenopodium quinoa HOM05D004689 ORTHO05D006269 4.6e-61 239.2 225 58.7
BcaB02g10459 Brassica carinata HOM05D004689 ORTHO05D006269 1.4e-54 217.6 195 62.6
Haze_05755 Corylus avellana HOM05D004689 ORTHO05D006269 4.2e-54 216.1 251 69.7
MBI17_g39322_MAGBIO Magnolia biondii HOM05D004689 ORTHO05D006269 1.3e-52 211.1 107 95.3
AUR62043819 Chenopodium quinoa HOM05D004689 ORTHO05D006269 3.0e-52 209.9 110 90.9
ATR0118G008 Amborella trichopoda HOM05D004689 ORTHO05D006269 5.1e-52 209.1 108 94.4
VMungo0219G0001 Vigna mungo HOM05D004689 ORTHO05D006269 5.1e-52 209.1 107 95.3
SEGI_10194 Sequoiadendron giganteum HOM05D004689 ORTHO05D006269 3.3e-51 206.5 130 78.5
Nitab4.5_0002373g0090 Nicotiana tabacum HOM05D004689 ORTHO05D006269 1.4e-49 201.1 110 87.3
Actinidia31313 Actinidia chinensis HOM05D004689 ORTHO05D006269 2.6e-48 196.8 106 89.6
TAR636G1083 Trochodendron aralioides HOM05D004689 ORTHO05D006269 5.8e-48 195.7 107 87.9
MBI17_g39319_MAGBIO Magnolia biondii HOM05D004689 ORTHO05D006269 1.4e-46 191.0 234 65.8
Nitab4.5_0000349g0010 Nicotiana tabacum HOM05D004689 ORTHO05D006269 1.4e-46 191.0 106 88.7
SMO031G0002 Selaginella moellendorffii HOM05D004689 ORTHO05D006269 1.1e-43 181.4 92 93.5
Haze_06063 Corylus avellana HOM05D004689 ORTHO05D023802 1.3e-42 177.9 207 64.3
Cc00_g23430 Coffea canephora HOM05D004689 ORTHO05D006269 3.7e-42 176.4 95 91.6
Cc00_g35330 Coffea canephora HOM05D004689 ORTHO05D006269 3.1e-41 173.3 95 90.5
ATR0118G005 Amborella trichopoda HOM05D004689 ORTHO05D006269 5.8e-40 169.1 91 89.0
AagrBONN_evm.TU.Sc2ySwM_344.3466 Anthoceros agrestis HOM05D004689 ORTHO05D006269 1.3e-39 167.9 139 66.9
Psat0s2549g0120 Pisum sativum HOM05D004689 ORTHO05D006269 8.2e-34 148.7 83 86.7
Psat1g060480 Pisum sativum HOM05D004689 ORTHO05D006269 1.0e-31 141.7 71 93.0
Psat1g060520 Pisum sativum HOM05D004689 ORTHO05D006269 1.0e-31 141.7 71 93.0
Psat1g060600 Pisum sativum HOM05D004689 ORTHO05D006269 1.3e-23 114.8 58 93.1
Nitab4.5_0000349g0040 Nicotiana tabacum HOM05D004689 ORTHO05D006269 5.0e-23 112.8 91 69.2
Pp3c4_2800 Physcomitrium patens HOM05D004689 ORTHO05D006269 1.7e-18 97.8 119 55.5
Haze_13658 Corylus avellana HOM05D004689 ORTHO05D023802 2.4e-17 94.0 181 44.2
Psat4g215720 Pisum sativum HOM05D002324 ORTHO05D002380 3.7e-10 70.1 103 46.6
Dinv44323 Davidia involucrata HOM05D004689 ORTHO05D183653 6.3e-10 69.3 38 86.8
Haze_05345 Corylus avellana HOM05D004689 ORTHO05D023802 8.2e-10 68.9 154 57.1
Dinv25427 Davidia involucrata HOM05D004689 ORTHO05D182071 1.1e-09 68.6 38 84.2
Haze_08899 Corylus avellana HOM05D004689 ORTHO05D165887 1.2e-08 65.1 60 60.0
Haze_08645 Corylus avellana HOM05D004689 ORTHO05D023802 2.2e-07 60.8 61 60.7
Dinv29092 Davidia involucrata HOM05D004689 ORTHO05D185927 5.0e-07 59.7 45 64.4


User provided reference genes

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