Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G1499 Cannabis sativa HOM05D007625 ORTHO05D009738 1.1e-181 639.8 312 100.0
Atru.chr4.2832 Acer truncatum HOM05D007625 ORTHO05D009738 1.3e-110 403.7 257 75.1
Ciclev10005679m.g Citrus clementina HOM05D007625 ORTHO05D009738 1.7e-110 403.3 257 75.9
CSS0007271 Camellia sinensis var. sinensis HOM05D007625 ORTHO05D009738 2.3e-107 392.9 254 72.0
Duzib212G0442 Durio zibethinus HOM05D007625 ORTHO05D009738 2.3e-107 392.9 255 72.9
TWI09G0101 Tripterygium wilfordii HOM05D007625 ORTHO05D009738 2.3e-107 392.9 252 74.6
Prupe.1G137400 Prunus persica HOM05D007625 ORTHO05D009738 3.9e-107 392.1 255 74.5
Actinidia00027 Actinidia chinensis HOM05D007625 ORTHO05D009738 6.7e-107 391.3 258 71.3
Thecc.04G284200 Theobroma cacao HOM05D007625 ORTHO05D009738 2.6e-106 389.4 255 71.8
RcHm_v2.0_Chr4g0422131 Rosa chinensis HOM05D007625 ORTHO05D009738 3.3e-106 389.0 253 73.5
PGR031G0588 Punica granatum HOM05D007625 ORTHO05D009738 1.3e-105 387.1 255 73.3
Gohir.A09G239300 Gossypium hirsutum HOM05D007625 ORTHO05D009738 2.8e-105 386.0 254 70.5
Gohir.D09G240200 Gossypium hirsutum HOM05D007625 ORTHO05D009738 2.8e-105 386.0 257 70.8
GSVIVG01017755001 Vitis vinifera HOM05D007625 ORTHO05D009738 6.3e-105 384.8 245 74.3
QL06p008815 Quercus lobata HOM05D007625 ORTHO05D009738 1.8e-104 383.3 258 71.7
Lj4g0027770 Lotus japonicus HOM05D007625 ORTHO05D009738 9.1e-104 380.9 258 70.5
Sabra10G0014200 Salix brachista HOM05D007625 ORTHO05D009738 1.2e-103 380.6 259 71.8
FAN07G2640 Fragaria x ananassa HOM05D007625 ORTHO05D009738 2.6e-103 379.4 251 71.3
Manes.03G194700 Manihot esculenta HOM05D007625 ORTHO05D009738 3.5e-103 379.0 254 72.8
Psat4g025880 Pisum sativum HOM05D007625 ORTHO05D009738 4.5e-103 378.6 258 68.6
Medtr4g119840 Medicago truncatula HOM05D007625 ORTHO05D009738 5.9e-103 378.3 258 69.4
TAR633G2367 Trochodendron aralioides HOM05D007625 ORTHO05D009738 5.9e-103 378.3 258 70.5
MBI18_g04687_MAGBIO Magnolia biondii HOM05D007625 ORTHO05D009738 7.7e-103 377.9 255 69.0
AL3G29430 Arabidopsis lyrata HOM05D007625 ORTHO05D009738 1.3e-102 377.1 258 69.4
Lsat_1_v5_gn_5_53001 Lactuca sativa HOM05D007625 ORTHO05D009738 1.7e-102 376.7 247 72.9
VMungo1215G1867 Vigna mungo HOM05D007625 ORTHO05D009738 2.2e-102 376.3 256 69.1
Rhsim02G0009500 Rhododendron simsii HOM05D007625 ORTHO05D009738 2.9e-102 375.9 260 68.5
Sp3g14890 Schrenkiella parvula HOM05D007625 ORTHO05D009738 6.5e-102 374.8 258 69.4
FvH4_4g17960 Fragaria vesca HOM05D007625 ORTHO05D009738 1.1e-101 374.0 251 70.1
MD13G1169000 Malus domestica HOM05D007625 ORTHO05D009738 2.5e-101 372.9 251 69.7
arahy.Tifrunner.gnm1.ann1.96EVWK Arachis hypogaea HOM05D007625 ORTHO05D009738 5.5e-101 371.7 267 65.9
arahy.Tifrunner.gnm1.ann1.QKB3E6 Arachis hypogaea HOM05D007625 ORTHO05D009738 7.2e-101 371.3 260 67.3
Phvul.003G105100 Phaseolus vulgaris HOM05D007625 ORTHO05D009738 7.2e-101 371.3 265 66.4
TPR.G3171 Trifolium pratense HOM05D007625 ORTHO05D009738 9.4e-101 370.9 257 68.9
Glyma.07G247900 Glycine max HOM05D007625 ORTHO05D009738 1.2e-100 370.5 258 66.3
Thhalv10021369m.g Eutrema salsugineum HOM05D007625 ORTHO05D009738 2.1e-100 369.8 258 69.0
BcaB06g25757 Brassica carinata HOM05D007625 ORTHO05D009738 2.7e-100 369.4 258 68.6
Lalb_Chr13g0303611 Lupinus albus HOM05D007625 ORTHO05D009738 3.6e-100 369.0 257 68.1
Ca_21505_v3 Cicer arietinum L. HOM05D007625 ORTHO05D009738 8.0e-100 367.9 258 67.8
CARHR091770 Cardamine hirsuta HOM05D007625 ORTHO05D009738 1.0e-99 367.5 258 69.0
CSS0032939 Camellia sinensis var. sinensis HOM05D007625 ORTHO05D009738 6.7e-99 364.8 273 64.5
Gorai.006G263200 Gossypium raimondii HOM05D007625 ORTHO05D009738 3.3e-98 362.5 236 71.2
DCAR_027078 Daucus carota HOM05D007625 ORTHO05D009738 9.7e-98 360.9 257 66.9
AT3G16565 Arabidopsis thaliana HOM05D007625 ORTHO05D009738 4.8e-97 358.6 291 61.9
BraA05t22123Z Brassica rapa HOM05D007625 ORTHO05D009738 8.2e-97 357.8 274 64.2
Aqoxy2G02997 Aquilegia oxysepala HOM05D007625 ORTHO05D009738 3.1e-96 355.9 254 68.1
FAN17G2144 Fragaria x ananassa HOM05D007625 ORTHO05D009738 4.1e-96 355.5 277 63.5
FAN12G4294 Fragaria x ananassa HOM05D007625 ORTHO05D009738 7.0e-96 354.8 243 69.5
Potri.010G024900 Populus trichocarpa HOM05D007625 ORTHO05D009738 7.0e-96 354.8 247 69.6
SGA_v2.0_scaffold428G51521 Striga asiatica HOM05D007625 ORTHO05D009738 1.2e-95 354.0 252 66.3
Dinv44384 Davidia involucrata HOM05D007625 ORTHO05D005073 2.0e-95 353.2 248 68.5
HanXRQChr03g0080751 Helianthus annuus HOM05D007625 ORTHO05D009738 2.0e-95 353.2 258 65.9
BolC5t33727H Brassica oleracea HOM05D007625 ORTHO05D009738 1.3e-94 350.5 274 62.8
C05p49750 Brassica napus HOM05D007625 ORTHO05D009738 1.7e-94 350.1 269 64.3
PSO017G7039 Papaver somniferum HOM05D007625 ORTHO05D009738 1.7e-94 350.1 250 66.8
FAN12G1696 Fragaria x ananassa HOM05D007625 ORTHO05D009738 3.8e-94 349.0 246 67.5
Migut.N00092 Erythranthe guttata HOM05D007625 ORTHO05D009738 3.2e-93 345.9 251 64.5
Rhsim02G0010500 Rhododendron simsii HOM05D007625 ORTHO05D009738 5.5e-93 345.1 242 67.4
Eucgr.B01310 Eucalyptus grandis HOM05D007625 ORTHO05D009738 7.2e-93 344.7 241 70.5
BcaNung06438 Brassica carinata HOM05D007625 ORTHO05D009738 9.4e-93 344.4 240 68.3
ECA240G3588 Erigeron canadensis HOM05D007625 ORTHO05D009738 2.1e-92 343.2 251 66.1
Cc03_g01990 Coffea canephora HOM05D007625 ORTHO05D009738 2.7e-92 342.8 243 68.7
Hund20557 Selenicereus undatus HOM05D007625 ORTHO05D009738 2.7e-92 342.8 253 66.0
Hma1.2p1_1567F.1_g291060 Hydrangea macrophylla HOM05D007625 ORTHO05D009738 1.7e-89 333.6 211 74.4
ATR0796G164 Amborella trichopoda HOM05D007625 ORTHO05D009738 1.1e-85 320.9 256 61.3
Hma1.2p1_0078F.1_g040640 Hydrangea macrophylla HOM05D007625 ORTHO05D009738 1.5e-85 320.5 210 71.9
Os01g0120400 Oryza sativa ssp. japonica HOM05D007625 ORTHO05D009738 1.5e-85 320.5 251 59.0
vmacro15237 Vaccinium macrocarpon HOM05D007625 ORTHO05D009738 2.1e-84 316.6 254 63.0
SalBow5G0239 Salvia bowleyana HOM05D007625 ORTHO05D009738 1.3e-81 307.4 221 65.2
Pp3c1_7890 Physcomitrium patens HOM05D007625 ORTHO05D009738 6.6e-78 295.0 251 57.0
Cpa.g.sc16.167 Carica papaya HOM05D007625 ORTHO05D009738 6.1e-76 288.5 206 68.4
Nn3g21433 Nelumbo nucifera HOM05D007625 ORTHO05D009738 1.5e-74 283.9 251 57.4
Lj3A816T27 Lonicera japonica HOM05D007625 ORTHO05D009738 1.1e-72 277.7 214 65.4
SMO356G0461 Selaginella moellendorffii HOM05D007625 ORTHO05D009738 4.6e-71 272.3 252 53.6
CDE12G0709 Ceratophyllum demersum HOM05D007625 ORTHO05D009738 1.4e-67 260.8 251 53.8
Carub.0003s1629 Capsella rubella HOM05D007625 ORTHO05D009738 8.9e-67 258.1 163 72.4
SMO002G0002 Selaginella moellendorffii HOM05D007625 ORTHO05D009738 2.0e-66 256.9 243 52.7
AUR62035873 Chenopodium quinoa HOM05D007625 ORTHO05D009738 9.8e-66 254.6 204 62.3
Glyma.17G026200 Glycine max HOM05D007625 ORTHO05D009738 4.9e-65 252.3 359 42.9
Lj3A819G38 Lonicera japonica HOM05D007625 ORTHO05D009738 6.4e-65 251.9 273 52.0
Aa31LG8G3700 Aethionema arabicum HOM05D007625 ORTHO05D009738 1.4e-64 250.8 274 50.4
AagrBONN_evm.TU.Sc2ySwM_228.2358 Anthoceros agrestis HOM05D007625 ORTHO05D009738 2.1e-60 236.9 183 60.7
Zm00001eb334800 Zea mays HOM05D007625 ORTHO05D009738 2.5e-53 213.4 179 57.0
MCO16G322 Micromonas commoda HOM05D007625 ORTHO05D009738 8.1e-52 208.4 265 44.9
Sc19g0005180 Simmondsia chinensis HOM05D007625 ORTHO05D009738 8.1e-52 208.4 253 47.4
EL10Ac3g06592 Beta vulgaris HOM05D007625 ORTHO05D009738 9.9e-50 201.4 253 45.8
BcaB03g15776 Brassica carinata HOM05D007625 ORTHO05D009738 3.9e-30 136.3 116 62.1
unitig_0.g621 Utricularia gibba HOM05D007625 ORTHO05D009738 1.5e-26 124.4 154 46.8
Medtr4g123440 Medicago truncatula HOM05D007625 ORTHO05D009738 3.5e-23 113.2 115 52.2
Hma1.2p1_0785F.1_g217410 Hydrangea macrophylla HOM05D007625 ORTHO05D009738 4.6e-23 112.8 66 74.2
Cpa.g.c47082 Carica papaya HOM05D007625 ORTHO05D009738 1.0e-22 111.7 83 66.3
Aqoxy2G02999 Aquilegia oxysepala HOM05D007625 ORTHO05D009738 6.0e-15 85.9 71 60.6
Glyma.19G060100 Glycine max HOM05D007625 ORTHO05D009738 3.0e-14 83.6 125 40.8
Thhalv10012575m.g Eutrema salsugineum HOM05D001816 ORTHO05D002001 1.8e-11 74.3 211 31.8
AL6G33900 Arabidopsis lyrata HOM05D001816 ORTHO05D002001 2.4e-11 73.9 212 30.7
BcaC03g13917 Brassica carinata HOM05D001816 ORTHO05D002001 2.4e-11 73.9 228 29.4
C02p11280 Brassica napus HOM05D001816 ORTHO05D002001 2.4e-11 73.9 228 29.4
CARHR190770 Cardamine hirsuta HOM05D001816 ORTHO05D002001 2.4e-11 73.9 219 30.1
BNapus_Darmor_BZH_scaffold_38p00390 Brassica napus HOM05D001816 ORTHO05D002001 5.3e-11 72.8 210 30.0
Carub.0006s2052 Capsella rubella HOM05D001816 ORTHO05D002001 5.3e-11 72.8 219 31.1
AT5G22800 Arabidopsis thaliana HOM05D001816 ORTHO05D002001 6.9e-11 72.4 212 30.7
BolC2t07196H Brassica oleracea HOM05D001816 ORTHO05D002001 6.9e-11 72.4 210 30.0
BraA02t05688Z Brassica rapa HOM05D001816 ORTHO05D002001 9.0e-11 72.0 210 30.0
MD16G1169600 Malus domestica HOM05D007625 ORTHO05D009738 9.0e-11 72.0 66 51.5
BcaB05g22693 Brassica carinata HOM05D001816 ORTHO05D002001 1.2e-10 71.6 211 29.4
Aa31LG2G15270 Aethionema arabicum HOM05D001816 ORTHO05D002001 1.5e-10 71.2 214 29.0
ATR0712G016 Amborella trichopoda HOM05D001816 ORTHO05D002001 1.5e-10 71.2 206 32.0
CiPaw.05G091200 Carya illinoinensis HOM05D001816 ORTHO05D002001 5.9e-10 69.3 214 31.8
Nn6g31779 Nelumbo nucifera HOM05D001816 ORTHO05D002001 5.9e-10 69.3 228 30.3
FvH4_2g16070 Fragaria vesca HOM05D001816 ORTHO05D002001 7.6e-10 68.9 220 29.5
FAN15G3397 Fragaria x ananassa HOM05D001816 ORTHO05D002001 7.6e-10 68.9 220 29.1
FAN24G0316 Fragaria x ananassa HOM05D001816 ORTHO05D002001 7.6e-10 68.9 220 29.5
FAN20G1974 Fragaria x ananassa HOM05D001816 ORTHO05D002001 1.0e-09 68.6 219 29.2
FAN27G0881 Fragaria x ananassa HOM05D001816 ORTHO05D002001 1.3e-09 68.2 220 28.6
RcHm_v2.0_Chr4g0446511 Rosa chinensis HOM05D001816 ORTHO05D002001 1.7e-09 67.8 235 26.8
THA.LOC104807386 Tarenaya hassleriana HOM05D001816 ORTHO05D002001 1.7e-09 67.8 208 30.8
Pp3c2_4380 Physcomitrium patens HOM05D001816 ORTHO05D002001 2.9e-09 67.0 220 29.1
SGA_v2.0_scaffold32G13329 Striga asiatica HOM05D001816 ORTHO05D002001 2.9e-09 67.0 213 28.6
RcHm_v2.0_Chr6g0279751 Rosa chinensis HOM05D001816 ORTHO05D002001 3.8e-09 66.6 220 29.5
Sp6g22620 Schrenkiella parvula HOM05D001816 ORTHO05D002001 3.8e-09 66.6 218 29.4
Zm00001eb371640 Zea mays HOM05D001816 ORTHO05D002001 3.8e-09 66.6 208 28.4
PGR142G1779 Punica granatum HOM05D001816 ORTHO05D002001 5.0e-09 66.2 229 30.6
Rhsim03G0224600 Rhododendron simsii HOM05D001816 ORTHO05D002001 6.5e-09 65.9 246 27.2
Ah.01g023480 Amaranthus hybridus HOM05D001816 ORTHO05D002001 1.1e-08 65.1 234 29.9
Haze_02022 Corylus avellana HOM05D001816 ORTHO05D002001 1.1e-08 65.1 220 29.5
Lj9C403T6 Lonicera japonica HOM05D001816 ORTHO05D002001 1.1e-08 65.1 219 28.3
Prupe.8G174300 Prunus persica HOM05D001816 ORTHO05D002001 1.1e-08 65.1 214 30.4
Thecc.02G050000 Theobroma cacao HOM05D001816 ORTHO05D002001 1.1e-08 65.1 235 28.1
Actinidia20551 Actinidia chinensis HOM05D001816 ORTHO05D002001 1.4e-08 64.7 228 28.1
MD10G1133000 Malus domestica HOM05D001816 ORTHO05D002001 1.4e-08 64.7 214 29.4
EL10Ac9g21289 Beta vulgaris HOM05D001816 ORTHO05D002001 1.9e-08 64.3 233 29.6
Cfa005345 Carpinus fangiana HOM05D001816 ORTHO05D002001 2.5e-08 63.9 220 29.5
CsaV3_3G031480 Cucumis sativus L. HOM05D001816 ORTHO05D002001 2.5e-08 63.9 236 23.3
Gohir.D02G229700 Gossypium hirsutum HOM05D001816 ORTHO05D002001 2.5e-08 63.9 233 27.0
Manes.04G068300 Manihot esculenta HOM05D001816 ORTHO05D002001 2.5e-08 63.9 212 28.8
Peaxi162Scf00133g00523 Petunia axillaris HOM05D001816 ORTHO05D002001 2.5e-08 63.9 242 28.9
Sed0023914 Sechium edule HOM05D001816 ORTHO05D002001 2.5e-08 63.9 233 26.2
Atru.chr5.3488 Acer truncatum HOM05D001816 ORTHO05D002001 3.2e-08 63.5 221 28.5
CiPaw.05G167200 Carya illinoinensis HOM05D001816 ORTHO05D002001 3.2e-08 63.5 236 25.0
COL.COLO4_17969 Corchorus olitorius HOM05D001816 ORTHO05D002001 3.2e-08 63.5 235 27.7
Duzib132G0368 Durio zibethinus HOM05D001816 ORTHO05D002001 3.2e-08 63.5 230 29.6
Gorai.005G257400 Gossypium raimondii HOM05D001816 ORTHO05D002001 3.2e-08 63.5 233 27.0
Pp3c27_7320 Physcomitrium patens HOM05D001816 ORTHO05D002001 3.2e-08 63.5 241 25.3
DCAR_022835 Daucus carota HOM05D001816 ORTHO05D002001 4.2e-08 63.2 223 29.1
SalBow2G2560 Salvia bowleyana HOM05D001816 ORTHO05D002001 4.2e-08 63.2 236 26.7
Actinidia24519 Actinidia chinensis HOM05D001816 ORTHO05D002001 5.5e-08 62.8 261 25.7
ClCG10G011880 Citrullus lanatus HOM05D001816 ORTHO05D002001 7.2e-08 62.4 236 24.6
Gohir.A03G208200 Gossypium hirsutum HOM05D001816 ORTHO05D002001 7.2e-08 62.4 235 27.7
MD10G1133100 Malus domestica HOM05D001816 ORTHO05D002001 7.2e-08 62.4 205 30.7
CANSAT25G0387 Cannabis sativa HOM05D001816 ORTHO05D002001 9.3e-08 62.0 208 29.8
AUR62009961 Chenopodium quinoa HOM05D001816 ORTHO05D002001 9.3e-08 62.0 232 28.4
AUR62012953 Chenopodium quinoa HOM05D001816 ORTHO05D002001 9.3e-08 62.0 232 28.0
TWI31G0479 Tripterygium wilfordii HOM05D001816 ORTHO05D002001 9.3e-08 62.0 220 26.4
GSVIVG01023918001 Vitis vinifera HOM05D001816 ORTHO05D002001 9.3e-08 62.0 220 29.5
AagrBONN_evm.TU.Sc2ySwM_344.917 Anthoceros agrestis HOM05D001816 ORTHO05D002001 1.2e-07 61.6 243 25.5
Cc02_g00090 Coffea canephora HOM05D001816 ORTHO05D002001 1.2e-07 61.6 239 25.9
vmacro17274 Vaccinium macrocarpon HOM05D001816 ORTHO05D002001 1.2e-07 61.6 221 27.1
Actinidia08767 Actinidia chinensis HOM05D001816 ORTHO05D002001 1.6e-07 61.2 261 25.3
AUR62028574 Chenopodium quinoa HOM05D001816 ORTHO05D002001 1.6e-07 61.2 236 25.0
Manes.04G066500 Manihot esculenta HOM05D001816 ORTHO05D002001 1.6e-07 61.2 236 24.6
PSO170G2372 Papaver somniferum HOM05D001816 ORTHO05D002001 1.6e-07 61.2 222 29.3
AagrBONN_evm.TU.Sc2ySwM_228.5790 Anthoceros agrestis HOM05D001816 ORTHO05D002001 2.1e-07 60.8 243 25.1
Eucgr.I01492 Eucalyptus grandis HOM05D001816 ORTHO05D002001 2.1e-07 60.8 228 29.8
Carub.0001s3933 Capsella rubella HOM05D001816 ORTHO05D002001 2.7e-07 60.5 262 24.0
AUR62033529 Chenopodium quinoa HOM05D001816 ORTHO05D002001 2.7e-07 60.5 236 25.0
Migut.B00031 Erythranthe guttata HOM05D001816 ORTHO05D002001 2.7e-07 60.5 214 28.5
Sp1g37060 Schrenkiella parvula HOM05D001816 ORTHO05D002001 3.6e-07 60.1 249 25.7
arahy.Tifrunner.gnm1.ann1.X97WXI Arachis hypogaea HOM05D001816 ORTHO05D002001 4.6e-07 59.7 214 29.4
CSS0006826 Camellia sinensis var. sinensis HOM05D001816 ORTHO05D002001 6.1e-07 59.3 214 28.0
MD13G1007000 Malus domestica HOM05D001816 ORTHO05D002001 6.1e-07 59.3 237 27.0
PGR044G0467 Punica granatum HOM05D001816 ORTHO05D002001 6.1e-07 59.3 241 27.0
RcHm_v2.0_Chr5g0008751 Rosa chinensis HOM05D007625 ORTHO05D343624 6.1e-07 59.3 35 74.3
vmacro06369 Vaccinium macrocarpon HOM05D001816 ORTHO05D002001 6.1e-07 59.3 246 25.6
Manes.11G108600 Manihot esculenta HOM05D001816 ORTHO05D002001 7.9e-07 58.9 258 23.3
Potri.009G141300 Populus trichocarpa HOM05D001816 ORTHO05D002001 7.9e-07 58.9 229 28.8
arahy.Tifrunner.gnm1.ann1.1BU1FJ Arachis hypogaea HOM05D001816 ORTHO05D002001 1.0e-06 58.5 214 29.0
HanXRQChr17g0559451 Helianthus annuus HOM05D001816 ORTHO05D002001 1.0e-06 58.5 204 27.5
Ciclev10030103m.g Citrus clementina HOM05D001816 ORTHO05D002001 1.3e-06 58.2 255 27.5
Lj1g0012910 Lotus japonicus HOM05D001816 ORTHO05D002001 1.8e-06 57.8 214 28.5
TWI74G1422 Tripterygium wilfordii HOM05D001816 ORTHO05D002001 2.3e-06 57.4 249 24.9
THA.LOC104801893 Tarenaya hassleriana HOM05D001816 ORTHO05D002001 3.0e-06 57.0 226 26.1
THA.LOC104815233 Tarenaya hassleriana HOM05D001816 ORTHO05D002001 5.1e-06 56.2 229 24.0


User provided reference genes

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