Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G1304 Cannabis sativa HOM05D004008 ORTHO05D005383 5.2e-210 734.2 383 100.0
Haze_11762 Corylus avellana HOM05D004008 ORTHO05D005383 7.1e-175 617.5 383 83.8
Cfa008746 Carpinus fangiana HOM05D004008 ORTHO05D005383 1.0e-173 613.6 383 83.3
Prupe.1G348400 Prunus persica HOM05D004008 ORTHO05D005383 3.1e-170 602.1 382 82.2
Potri.007G072500 Populus trichocarpa HOM05D004008 ORTHO05D005383 9.0e-170 600.5 372 82.5
Potri.005G091600 Populus trichocarpa HOM05D004008 ORTHO05D005383 8.4e-168 594.0 372 81.7
Manes.11G103000 Manihot esculenta HOM05D004008 ORTHO05D005383 1.7e-165 586.3 378 81.5
Eucgr.C00142 Eucalyptus grandis HOM05D004008 ORTHO05D005383 2.3e-165 585.9 379 81.5
CiPaw.01G129500 Carya illinoinensis HOM05D004008 ORTHO05D005383 3.0e-165 585.5 348 86.2
MD13G1004100 Malus domestica HOM05D004008 ORTHO05D005383 3.9e-165 585.1 379 81.3
QL12p007515 Quercus lobata HOM05D004008 ORTHO05D005383 1.5e-164 583.2 376 81.4
Sed0006741 Sechium edule HOM05D004008 ORTHO05D005383 1.5e-164 583.2 379 81.0
MD16G1003400 Malus domestica HOM05D004008 ORTHO05D005383 5.6e-164 581.3 379 80.7
Actinidia12791 Actinidia chinensis HOM05D004008 ORTHO05D005383 7.3e-164 580.9 353 85.3
Gohir.A03G165100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.3e-163 580.1 381 80.1
CsaV3_3G031800 Cucumis sativus L. HOM05D004008 ORTHO05D005383 3.6e-163 578.6 384 80.5
Gohir.D02G188300 Gossypium hirsutum HOM05D004008 ORTHO05D005383 4.8e-163 578.2 381 79.8
Gorai.005G211000 Gossypium raimondii HOM05D004008 ORTHO05D005383 4.8e-163 578.2 381 79.8
TWI75G1091 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 4.8e-163 578.2 379 80.2
ClCG10G012060 Citrullus lanatus HOM05D004008 ORTHO05D005383 2.4e-162 575.9 398 78.1
Hma1.2p1_0637F.1_g193530 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 5.3e-162 574.7 369 81.0
Cpa.g.sc43.43 Carica papaya HOM05D004008 ORTHO05D005383 2.0e-161 572.8 382 80.9
RcHm_v2.0_Chr4g0446801 Rosa chinensis HOM05D004008 ORTHO05D005383 2.0e-161 572.8 353 83.6
GSVIVG01002505001 Vitis vinifera HOM05D004008 ORTHO05D005383 2.6e-161 572.4 326 88.3
Lsat_1_v5_gn_7_112100 Lactuca sativa HOM05D004008 ORTHO05D005383 3.4e-161 572.0 357 83.5
COL.COLO4_33043 Corchorus olitorius HOM05D004008 ORTHO05D005383 4.5e-161 571.6 396 78.3
Dinv19616 Davidia involucrata HOM05D004008 ORTHO05D005383 4.5e-161 571.6 355 83.9
Gorai.012G134300 Gossypium raimondii HOM05D004008 ORTHO05D005383 4.5e-161 571.6 356 83.4
Psat7g172760 Pisum sativum HOM05D004008 ORTHO05D005383 9.9e-161 570.5 373 80.7
CSS0024885 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 1.7e-160 569.7 368 82.3
Medtr4g076600 Medicago truncatula HOM05D004008 ORTHO05D005383 1.7e-160 569.7 381 79.3
Cc05_g16090 Coffea canephora HOM05D004008 ORTHO05D005383 2.2e-160 569.3 384 77.1
Glyma.12G021100 Glycine max HOM05D004008 ORTHO05D005383 2.2e-160 569.3 324 88.3
arahy.Tifrunner.gnm1.ann1.416KLQ Arachis hypogaea HOM05D004008 ORTHO05D005383 2.9e-160 568.9 351 83.5
arahy.Tifrunner.gnm1.ann1.KXDS8S Arachis hypogaea HOM05D004008 ORTHO05D005383 2.9e-160 568.9 330 87.6
Hma1.2p1_0334F.1_g128730 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 2.9e-160 568.9 361 81.2
Aa31LG3G18290 Aethionema arabicum HOM05D004008 ORTHO05D005383 4.9e-160 568.2 385 79.2
Duzib132G0865 Durio zibethinus HOM05D004008 ORTHO05D005383 4.9e-160 568.2 383 78.9
THA.LOC104800860 Tarenaya hassleriana HOM05D004008 ORTHO05D005383 4.9e-160 568.2 381 80.3
Glyma.11G094700 Glycine max HOM05D004008 ORTHO05D005383 6.4e-160 567.8 324 88.0
RcHm_v2.0_Chr1g0330101 Rosa chinensis HOM05D004008 ORTHO05D005383 8.4e-160 567.4 376 78.2
Dinv42507 Davidia involucrata HOM05D004008 ORTHO05D005383 1.1e-159 567.0 375 80.3
TAR626G0539 Trochodendron aralioides HOM05D004008 ORTHO05D005383 1.4e-159 566.6 355 83.7
TAR626G1776 Trochodendron aralioides HOM05D004008 ORTHO05D005383 1.4e-159 566.6 355 83.7
AL6G18680 Arabidopsis lyrata HOM05D004008 ORTHO05D005383 3.2e-159 565.5 386 78.2
FAN12G0417 Fragaria x ananassa HOM05D004008 ORTHO05D005383 3.2e-159 565.5 360 80.6
Thecc.02G158900 Theobroma cacao HOM05D004008 ORTHO05D005383 3.2e-159 565.5 381 79.0
FAN07G1552 Fragaria x ananassa HOM05D004008 ORTHO05D005383 4.2e-159 565.1 362 80.4
PGR142G0362 Punica granatum HOM05D004008 ORTHO05D005383 4.2e-159 565.1 381 77.4
Carub.0006s0716 Capsella rubella HOM05D004008 ORTHO05D005383 1.6e-158 563.1 386 77.7
CAN.G943.40 Capsicum annuum HOM05D004008 ORTHO05D005383 1.6e-158 563.1 358 82.4
Ca_26057_v3 Cicer arietinum L. HOM05D004008 ORTHO05D005383 1.6e-158 563.1 373 79.4
VMungo1215G1012 Vigna mungo HOM05D004008 ORTHO05D005383 2.1e-158 562.8 345 85.5
AT5G08280 Arabidopsis thaliana HOM05D004008 ORTHO05D005383 2.7e-158 562.4 386 77.7
Lj1A905T43 Lonicera japonica HOM05D004008 ORTHO05D005383 2.7e-158 562.4 377 80.1
TWI12G0055 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 4.6e-158 561.6 378 79.1
BolC9t59612H Brassica oleracea HOM05D004008 ORTHO05D005383 6.0e-158 561.2 386 78.0
Thhalv10013814m.g Eutrema salsugineum HOM05D004008 ORTHO05D005383 6.0e-158 561.2 386 78.0
HanXRQChr01g0007731 Helianthus annuus HOM05D004008 ORTHO05D005383 6.0e-158 561.2 345 82.3
Sp6g34680 Schrenkiella parvula HOM05D004008 ORTHO05D005383 6.0e-158 561.2 386 78.2
Glyma.01G227400 Glycine max HOM05D004008 ORTHO05D005383 7.9e-158 560.8 332 87.3
Peaxi162Scf00452g00831 Petunia axillaris HOM05D004008 ORTHO05D005383 7.9e-158 560.8 381 78.2
TPR.G11683 Trifolium pratense HOM05D004008 ORTHO05D005383 7.9e-158 560.8 327 86.5
A10p28400 Brassica napus HOM05D004008 ORTHO05D005383 1.3e-157 560.1 386 78.0
BraA10t44887Z Brassica rapa HOM05D004008 ORTHO05D005383 1.3e-157 560.1 386 78.0
Sabra07G0061100 Salix brachista HOM05D004008 ORTHO05D005383 1.3e-157 560.1 450 67.8
CARHR204850 Cardamine hirsuta HOM05D004008 ORTHO05D005383 1.8e-157 559.7 386 77.7
Ciclev10031858m.g Citrus clementina HOM05D004008 ORTHO05D005383 3.0e-157 558.9 386 76.9
Sopen07g034650 Solanum pennellii HOM05D004008 ORTHO05D005383 3.0e-157 558.9 355 82.0
C09p68660 Brassica napus HOM05D004008 ORTHO05D005383 3.9e-157 558.5 386 77.7
Phvul.011G177100 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 3.9e-157 558.5 328 86.9
PGSC0003DMG400022126 Solanum tuberosum HOM05D004008 ORTHO05D005383 5.1e-157 558.1 355 82.0
Solyc07g066470.3 Solanum lycopersicum HOM05D004008 ORTHO05D005383 6.7e-157 557.8 355 81.7
HanXRQChr05g0153591 Helianthus annuus HOM05D004008 ORTHO05D005383 8.7e-157 557.4 334 85.0
arahy.Tifrunner.gnm1.ann1.6Z73IP Arachis hypogaea HOM05D004008 ORTHO05D005383 1.1e-156 557.0 376 77.1
Duzib248G1235 Durio zibethinus HOM05D004008 ORTHO05D005383 3.3e-156 555.4 381 77.2
Lalb_Chr09g0320431 Lupinus albus HOM05D004008 ORTHO05D005383 4.3e-156 555.1 363 81.0
C02p03470 Brassica napus HOM05D004008 ORTHO05D005383 5.6e-156 554.7 387 76.7
LjContig00222g0009052 Lotus japonicus HOM05D004008 ORTHO05D005383 5.6e-156 554.7 327 86.2
SalBow8G2118 Salvia bowleyana HOM05D004008 ORTHO05D005383 9.6e-156 553.9 352 79.8
A03p03710 Brassica napus HOM05D004008 ORTHO05D005383 1.3e-155 553.5 388 77.3
C03p04200 Brassica napus HOM05D004008 ORTHO05D005383 1.3e-155 553.5 387 78.3
BraA03t09719Z Brassica rapa HOM05D004008 ORTHO05D005383 1.3e-155 553.5 388 77.3
Oeu052004.1 Olea europaea HOM05D004008 ORTHO05D005383 2.1e-155 552.7 354 82.2
Sabra05G0076100 Salix brachista HOM05D004008 ORTHO05D005383 2.1e-155 552.7 436 68.6
Sc10g0004580 Simmondsia chinensis HOM05D004008 ORTHO05D005383 2.8e-155 552.4 341 82.1
FvH4_7g04700 Fragaria vesca HOM05D004008 ORTHO05D005383 3.7e-155 552.0 376 76.1
FAN10G2193 Fragaria x ananassa HOM05D004008 ORTHO05D005383 3.7e-155 552.0 376 76.1
BraA02t04947Z Brassica rapa HOM05D004008 ORTHO05D005383 6.2e-155 551.2 387 76.5
BcaB01g05618 Brassica carinata HOM05D004008 ORTHO05D005383 8.1e-155 550.8 384 78.1
BolC3t12952H Brassica oleracea HOM05D004008 ORTHO05D005383 8.1e-155 550.8 384 78.1
Peaxi162Scf00006g00139 Petunia axillaris HOM05D004008 ORTHO05D005383 1.4e-154 550.1 382 76.7
VMungo1127G2017 Vigna mungo HOM05D004008 ORTHO05D005383 3.1e-154 548.9 338 82.5
Gohir.A04G108500 Gossypium hirsutum HOM05D004008 ORTHO05D005383 4.0e-154 548.5 354 81.6
BolC2t06308H Brassica oleracea HOM05D004008 ORTHO05D005383 5.3e-154 548.1 387 76.0
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 6.9e-154 547.7 346 81.5
Phvul.002G034500 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 1.2e-153 547.0 327 85.3
Ah.10g029970 Amaranthus hybridus HOM05D004008 ORTHO05D005383 1.5e-153 546.6 334 82.0
BcaNung05097 Brassica carinata HOM05D004008 ORTHO05D005383 1.5e-153 546.6 389 76.6
FAN03G0704 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.6e-153 545.8 373 75.9
Nitab4.5_0001791g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 4.5e-153 545.0 328 85.1
Nitab4.5_0000134g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 2.2e-152 542.7 352 81.2
Aqoxy6G00207 Aquilegia oxysepala HOM05D004008 ORTHO05D005383 3.8e-152 542.0 363 78.8
MSTRG.14544 Avicennia marina HOM05D004008 ORTHO05D005383 6.5e-152 541.2 368 75.5
Rhsim06G0054400 Rhododendron simsii HOM05D004008 ORTHO05D005383 8.4e-152 540.8 360 80.0
EL10Ac2g02758 Beta vulgaris HOM05D004008 ORTHO05D005383 5.5e-151 538.1 332 80.4
MSTRG.13067 Avicennia marina HOM05D004008 ORTHO05D005383 7.1e-151 537.7 355 77.7
ECA248G2166 Erigeron canadensis HOM05D004008 ORTHO05D005383 7.1e-151 537.7 320 85.3
Hund13394 Selenicereus undatus HOM05D004008 ORTHO05D005383 1.6e-150 536.6 326 82.2
Migut.M01552 Erythranthe guttata HOM05D004008 ORTHO05D005383 2.1e-150 536.2 356 78.1
CSS0025050 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 2.7e-150 535.8 367 79.0
PSO541G2232 Papaver somniferum HOM05D004008 ORTHO05D005383 3.5e-150 535.4 381 73.2
PSO675G0755 Papaver somniferum HOM05D004008 ORTHO05D005383 7.9e-150 534.3 381 73.2
MBI18_g03839_MAGBIO Magnolia biondii HOM05D004008 ORTHO05D005383 2.3e-149 532.7 368 78.5
FAN06G1123 Fragaria x ananassa HOM05D004008 ORTHO05D005383 3.9e-149 531.9 376 74.5
FAN06G2867 Fragaria x ananassa HOM05D004008 ORTHO05D005383 3.9e-149 531.9 376 74.5
ATR0763G059 Amborella trichopoda HOM05D004008 ORTHO05D005383 6.7e-149 531.2 363 78.0
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 6.7e-149 531.2 382 74.1
unitig_21.g20251 Utricularia gibba HOM05D004008 ORTHO05D005383 6.7e-149 531.2 353 77.1
Migut.H01689 Erythranthe guttata HOM05D004008 ORTHO05D005383 1.1e-148 530.4 355 76.1
CDE05G3126 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 5.7e-148 528.1 358 77.7
CDE11G0020 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 1.6e-147 526.6 360 77.2
AUR62031735 Chenopodium quinoa HOM05D004008 ORTHO05D005383 2.1e-147 526.2 352 75.3
SGA_v2.0_scaffold186G40215 Striga asiatica HOM05D004008 ORTHO05D005383 2.1e-147 526.2 371 73.9
HPP92_002271 Vanilla planifolia HOM05D004008 ORTHO05D005383 6.2e-147 524.6 332 80.7
AUR62032620 Chenopodium quinoa HOM05D004008 ORTHO05D005383 8.2e-147 524.2 357 74.5
vmacro11667 Vaccinium macrocarpon HOM05D004008 ORTHO05D005383 2.4e-146 522.7 459 65.4
FAN17G0554 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.0e-145 519.6 300 86.7
Gohir.D04G148100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.0e-144 517.3 287 90.6
BcaB08g37268 Brassica carinata HOM05D004008 ORTHO05D005383 2.9e-144 515.8 386 73.3
Lj4g0025599 Lotus japonicus HOM05D004008 ORTHO05D005383 8.4e-144 514.2 355 75.5
SGA_v2.0_scaffold7G03592 Striga asiatica HOM05D004008 ORTHO05D005383 2.5e-143 512.7 358 75.4
CDE02G2123 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 3.2e-143 512.3 326 80.7
MELO3C024010.2 Cucumis melo HOM05D004008 ORTHO05D005383 3.0e-141 505.8 287 88.5
BcaC03g13214 Brassica carinata HOM05D004008 ORTHO05D005383 5.7e-140 501.5 387 71.8
DCAR_013737 Daucus carota HOM05D004008 ORTHO05D005383 2.8e-139 499.2 343 77.6
Os02g0168800 Oryza sativa ssp. japonica HOM05D004008 ORTHO05D005383 4.5e-137 491.9 363 71.6
Zm00001eb207370 Zea mays HOM05D004008 ORTHO05D005383 5.9e-137 491.5 337 74.8
Pp3c6_15990 Physcomitrium patens HOM05D004008 ORTHO05D005383 2.7e-134 482.6 326 75.5
Pp3c5_16770 Physcomitrium patens HOM05D004008 ORTHO05D005383 2.3e-133 479.6 357 69.7
TAR624G0715 Trochodendron aralioides HOM05D004008 ORTHO05D005383 5.1e-133 478.4 329 79.3
Pp3c15_6300 Physcomitrium patens HOM05D004008 ORTHO05D005383 6.7e-133 478.0 401 65.1
SMO364G0819 Selaginella moellendorffii HOM05D004008 ORTHO05D005383 6.7e-133 478.0 331 74.3
Mapoly0015s0060 Marchantia polymorpha HOM05D004008 ORTHO05D005383 9.7e-132 474.2 326 73.3
CBR_g48425 Chara braunii HOM05D004008 ORTHO05D005383 2.8e-131 472.6 339 71.1
SEGI_21965 Sequoiadendron giganteum HOM05D004008 ORTHO05D005383 1.8e-130 469.9 299 79.6
Zm00001eb233020 Zea mays HOM05D004008 ORTHO05D005383 1.3e-128 463.8 301 76.7
Cre16.g663900 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D005383 1.4e-114 417.2 330 66.7
FvH4_4g37020 Fragaria vesca HOM05D004008 ORTHO05D005383 1.9e-111 406.8 266 80.5
MCO01G747 Micromonas commoda HOM05D004008 ORTHO05D005383 2.5e-111 406.4 314 66.9
Sed0020742 Sechium edule HOM05D004008 ORTHO05D005383 1.2e-108 397.5 250 82.0
Oeu001944.1 Olea europaea HOM05D004008 ORTHO05D005383 2.4e-106 389.8 261 80.5
PRCOL_00005560 Prasinoderma coloniale HOM05D004008 ORTHO05D005383 7.5e-100 368.2 290 65.5
AagrBONN_evm.TU.Sc2ySwM_117.3714 Anthoceros agrestis HOM05D004008 ORTHO05D005383 5.2e-93 345.5 255 74.1
Psat5g025240 Pisum sativum HOM05D004008 ORTHO05D005383 6.4e-83 312.0 309 60.2
Nn7g38125 Nelumbo nucifera HOM05D004008 ORTHO05D005383 6.0e-73 278.9 193 78.8
arahy.Tifrunner.gnm1.ann1.VI50KN Arachis hypogaea HOM05D004008 ORTHO05D005383 1.9e-71 273.9 190 74.7
Actinidia07354 Actinidia chinensis HOM05D004008 ORTHO05D005383 1.8e-69 267.3 356 49.7
Haze_26918 Corylus avellana HOM05D004008 ORTHO05D163716 2.3e-69 266.9 309 50.5
Glyma.11G015433 Glycine max HOM05D004008 ORTHO05D005383 7.9e-49 198.7 112 85.7
Psat5g278360 Pisum sativum HOM05D004008 ORTHO05D000002 2.1e-46 190.7 113 85.8
BcaC07g39332 Brassica carinata HOM05D004008 ORTHO05D032875 1.7e-43 181.0 226 54.4
C08p23470 Brassica napus HOM05D004008 ORTHO05D032875 3.2e-42 176.8 174 61.5
BolC8t49976H Brassica oleracea HOM05D004008 ORTHO05D032875 3.2e-42 176.8 174 61.5
BcaC08g43816 Brassica carinata HOM05D004008 ORTHO05D013026 1.2e-33 148.3 104 70.2
Cre02.g113850 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D145669 2.1e-33 147.5 357 31.7
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 7.9e-33 145.6 102 71.6
C09p39940 Brassica napus HOM05D004008 ORTHO05D027220 7.9e-33 145.6 102 71.6
C03p57930 Brassica napus HOM05D004008 ORTHO05D027220 5.1e-32 142.9 102 70.6
C02p56520 Brassica napus HOM05D000109 ORTHO05D000210 8.7e-32 142.1 98 71.4
BolC9t56891H Brassica oleracea HOM05D004008 ORTHO05D013026 3.3e-31 140.2 106 67.0
BcaC03g17816 Brassica carinata HOM05D003055 ORTHO05D013026 3.7e-30 136.7 107 64.5
C02p58390 Brassica napus HOM05D003055 ORTHO05D013026 1.5e-28 131.3 106 62.3
BolC3t18065H Brassica oleracea HOM05D003055 ORTHO05D013026 4.5e-20 103.2 64 78.1
TPR.G13755 Trifolium pratense HOM05D004008 ORTHO05D410752 4.2e-18 96.7 67 79.1
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 7.9e-17 92.4 49 91.8
Rhsim06G0151600 Rhododendron simsii HOM05D001371 ORTHO05D001319 3.0e-16 90.5 61 80.3
C05p24790 Brassica napus HOM05D003055 ORTHO05D013026 3.3e-07 60.5 38 68.4
BcaC01g02956 Brassica carinata HOM05D003055 ORTHO05D013026 3.7e-06 57.0 38 65.8


User provided reference genes

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