Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G0722 Cannabis sativa HOM05D006900 ORTHO05D008651 1.2e-117 427.6 455 100.0
CANSAT64G2951 Cannabis sativa HOM05D006900 ORTHO05D008651 1.2e-56 224.9 251 57.4
MD13G1154800 Malus domestica HOM05D006900 ORTHO05D008651 1.9e-46 191.0 247 47.4
RcHm_v2.0_Chr4g0425111 Rosa chinensis HOM05D006900 ORTHO05D008651 2.5e-46 190.7 233 49.8
Thecc.04G300100 Theobroma cacao HOM05D006900 ORTHO05D008651 2.4e-44 184.1 250 48.0
FAN07G1219 Fragaria x ananassa HOM05D006900 ORTHO05D008651 4.1e-44 183.3 231 48.5
GSVIVG01034997001 Vitis vinifera HOM05D006900 ORTHO05D008651 4.5e-43 179.9 245 46.9
Prupe.1G117800 Prunus persica HOM05D006900 ORTHO05D008651 1.0e-42 178.7 256 45.7
FvH4_4g19660 Fragaria vesca HOM05D006900 ORTHO05D008651 1.3e-42 178.3 231 47.6
FAN12G3178 Fragaria x ananassa HOM05D006900 ORTHO05D008651 1.3e-42 178.3 231 47.6
Duzib212G0988 Durio zibethinus HOM05D006900 ORTHO05D008651 2.9e-42 177.2 249 45.4
Haze_01304 Corylus avellana HOM05D006900 ORTHO05D008651 3.8e-42 176.8 251 47.4
Cfa015319 Carpinus fangiana HOM05D006900 ORTHO05D008651 8.5e-42 175.6 236 47.0
Sabra10G0112000 Salix brachista HOM05D006900 ORTHO05D008651 3.2e-41 173.7 264 46.6
COL.COLO4_34620 Corchorus olitorius HOM05D006900 ORTHO05D008651 9.4e-41 172.2 217 47.5
Gorai.011G199800 Gossypium raimondii HOM05D006900 ORTHO05D008651 2.1e-40 171.0 255 43.9
CiPaw.02G075100 Carya illinoinensis HOM05D006900 ORTHO05D008651 2.7e-40 170.6 261 46.0
Gohir.A10G171600 Gossypium hirsutum HOM05D006900 ORTHO05D008651 3.6e-40 170.2 248 44.0
Manes.03G204600 Manihot esculenta HOM05D006900 ORTHO05D008651 4.6e-40 169.9 239 47.3
Actinidia13360 Actinidia chinensis HOM05D006900 ORTHO05D008651 7.9e-40 169.1 250 46.0
CsaV3_3G015170 Cucumis sativus L. HOM05D006900 ORTHO05D008651 1.4e-39 168.3 247 42.1
A05p32690 Brassica napus HOM05D006900 ORTHO05D008651 1.8e-39 167.9 241 45.6
Eucgr.H04042 Eucalyptus grandis HOM05D006900 ORTHO05D008651 1.8e-39 167.9 179 51.4
Gohir.D10G178700 Gossypium hirsutum HOM05D006900 ORTHO05D008651 1.8e-39 167.9 255 43.5
Lj4g0008712 Lotus japonicus HOM05D006900 ORTHO05D008651 1.8e-39 167.9 246 45.9
BraA05t22092Z Brassica rapa HOM05D006900 ORTHO05D008651 2.3e-39 167.5 241 45.6
BcaC05g28835 Brassica carinata HOM05D006900 ORTHO05D008651 3.0e-39 167.2 241 45.6
BolC5t33686H Brassica oleracea HOM05D006900 ORTHO05D008651 3.0e-39 167.2 241 45.6
Ciclev10004521m.g Citrus clementina HOM05D006900 ORTHO05D008651 6.7e-39 166.0 235 46.0
Medtr4g122060 Medicago truncatula HOM05D006900 ORTHO05D008651 6.7e-39 166.0 251 40.2
QL06p012004 Quercus lobata HOM05D006900 ORTHO05D008651 6.7e-39 166.0 266 45.1
Ah.04g156910 Amaranthus hybridus HOM05D006900 ORTHO05D008651 8.8e-39 165.6 103 72.8
Potri.010G145000 Populus trichocarpa HOM05D006900 ORTHO05D008651 8.8e-39 165.6 259 44.4
TWI09G0824 Tripterygium wilfordii HOM05D006900 ORTHO05D008651 8.8e-39 165.6 236 44.1
Aa31LG8G4070 Aethionema arabicum HOM05D006900 ORTHO05D008651 1.1e-38 165.2 173 53.2
Hma1.2p1_0013F.1_g008570 Hydrangea macrophylla HOM05D006900 ORTHO05D008651 1.1e-38 165.2 266 45.1
Atru.chr4.3007 Acer truncatum HOM05D006900 ORTHO05D008651 5.7e-38 162.9 249 45.4
SalBow8G4068 Salvia bowleyana HOM05D006900 ORTHO05D008651 5.7e-38 162.9 174 52.3
THA.LOC104820304 Tarenaya hassleriana HOM05D006900 ORTHO05D008651 5.7e-38 162.9 248 44.0
AL3G30020 Arabidopsis lyrata HOM05D006900 ORTHO05D008651 7.4e-38 162.5 265 40.8
C05p49400 Brassica napus HOM05D006900 ORTHO05D008651 7.4e-38 162.5 242 44.2
TPR.G16830 Trifolium pratense HOM05D006900 ORTHO05D008651 7.4e-38 162.5 246 43.1
BcaB06g25797 Brassica carinata HOM05D006900 ORTHO05D008651 9.7e-38 162.2 245 42.9
Ca_21442_v3 Cicer arietinum L. HOM05D006900 ORTHO05D008651 1.3e-37 161.8 248 44.4
SGA_v2.0_scaffold104G30080 Striga asiatica HOM05D006900 ORTHO05D008651 1.3e-37 161.8 123 65.0
Cc03_g00870 Coffea canephora HOM05D006900 ORTHO05D008651 1.7e-37 161.4 103 71.8
AUR62016204 Chenopodium quinoa HOM05D006900 ORTHO05D008651 2.2e-37 161.0 103 71.8
AUR62039284 Chenopodium quinoa HOM05D006900 ORTHO05D008651 2.2e-37 161.0 103 71.8
Thhalv10020271m.g Eutrema salsugineum HOM05D006900 ORTHO05D008651 2.2e-37 161.0 261 43.3
Lalb_Chr07g0182071 Lupinus albus HOM05D006900 ORTHO05D008651 2.2e-37 161.0 103 70.9
PSO170G0176 Papaver somniferum HOM05D006900 ORTHO05D008651 2.2e-37 161.0 103 70.9
PSO357G0537 Papaver somniferum HOM05D006900 ORTHO05D008651 2.2e-37 161.0 103 70.9
arahy.Tifrunner.gnm1.ann1.Z0RY6M Arachis hypogaea HOM05D006900 ORTHO05D008651 2.8e-37 160.6 249 46.6
Lj6A690T75 Lonicera japonica HOM05D006900 ORTHO05D008651 2.8e-37 160.6 178 53.9
Carub.0003s1679 Capsella rubella HOM05D006900 ORTHO05D008651 3.7e-37 160.2 223 43.9
ECA233G1261 Erigeron canadensis HOM05D006900 ORTHO05D008651 3.7e-37 160.2 103 71.8
Nn3g21725 Nelumbo nucifera HOM05D006900 ORTHO05D008651 3.7e-37 160.2 255 42.4
Sp3g15260 Schrenkiella parvula HOM05D006900 ORTHO05D008651 4.8e-37 159.8 180 48.9
CSS0034541 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 6.3e-37 159.5 246 45.1
HanXRQChr13g0393421 Helianthus annuus HOM05D006900 ORTHO05D008651 6.3e-37 159.5 103 72.8
TAR362G0296 Trochodendron aralioides HOM05D006900 ORTHO05D008651 6.3e-37 159.5 103 72.8
Solyc04g009020.4 Solanum lycopersicum HOM05D006900 ORTHO05D008651 8.2e-37 159.1 103 70.9
Sopen04g004200 Solanum pennellii HOM05D006900 ORTHO05D008651 8.2e-37 159.1 103 70.9
CDE01G0483 Ceratophyllum demersum HOM05D006900 ORTHO05D008651 1.4e-36 158.3 248 45.2
MELO3C006715.2 Cucumis melo HOM05D006900 ORTHO05D008651 1.4e-36 158.3 248 41.1
Dinv15174 Davidia involucrata HOM05D006900 ORTHO05D008651 1.4e-36 158.3 103 70.9
Migut.G00056 Erythranthe guttata HOM05D006900 ORTHO05D008651 1.4e-36 158.3 103 72.8
PGSC0003DMG400011531 Solanum tuberosum HOM05D006900 ORTHO05D008651 2.4e-36 157.5 103 69.9
MSTRG.10150 Avicennia marina HOM05D006900 ORTHO05D008651 4.1e-36 156.8 103 70.9
EL10Ac3g05503 Beta vulgaris HOM05D006900 ORTHO05D008651 4.1e-36 156.8 103 68.9
Lsat_1_v5_gn_6_18120 Lactuca sativa HOM05D006900 ORTHO05D008651 4.1e-36 156.8 103 69.9
Nitab4.5_0004979g0030 Nicotiana tabacum HOM05D006900 ORTHO05D008651 4.1e-36 156.8 103 69.9
Nitab4.5_0010299g0060 Nicotiana tabacum HOM05D006900 ORTHO05D008651 4.1e-36 156.8 103 69.9
Sc15g0003210 Simmondsia chinensis HOM05D006900 ORTHO05D008651 4.1e-36 156.8 102 69.6
Hma1.2p1_0013F.1_g008580 Hydrangea macrophylla HOM05D006900 ORTHO05D008651 5.3e-36 156.4 103 71.8
AT3G17040 Arabidopsis thaliana HOM05D006900 ORTHO05D008651 9.1e-36 155.6 265 40.4
CARHR092290 Cardamine hirsuta HOM05D006900 ORTHO05D008651 1.2e-35 155.2 196 44.4
ClCG05G006560 Citrullus lanatus HOM05D006900 ORTHO05D008651 1.2e-35 155.2 249 41.0
Peaxi162Scf00681g00223 Petunia axillaris HOM05D006900 ORTHO05D008651 1.5e-35 154.8 103 69.9
Rhsim02G0004000 Rhododendron simsii HOM05D006900 ORTHO05D008651 1.5e-35 154.8 261 40.6
Aqoxy5G02843 Aquilegia oxysepala HOM05D006900 ORTHO05D008651 2.0e-35 154.5 103 68.9
Glyma.17G033400 Glycine max HOM05D006900 ORTHO05D008651 2.0e-35 154.5 255 43.1
MBI18_g32026_MAGBIO Magnolia biondii HOM05D006900 ORTHO05D008651 2.6e-35 154.1 103 68.9
PGR004G2297 Punica granatum HOM05D006900 ORTHO05D008651 2.6e-35 154.1 258 41.9
DCAR_030472 Daucus carota HOM05D006900 ORTHO05D008651 4.5e-35 153.3 234 41.5
Glyma.07G240000 Glycine max HOM05D006900 ORTHO05D008651 4.5e-35 153.3 252 42.5
Psat0s740g0280 Pisum sativum HOM05D006900 ORTHO05D008651 7.7e-35 152.5 103 68.0
arahy.Tifrunner.gnm1.ann1.88EKIY Arachis hypogaea HOM05D006900 ORTHO05D008651 2.9e-34 150.6 249 44.2
ATR0693G010 Amborella trichopoda HOM05D006900 ORTHO05D008651 3.8e-34 150.2 103 64.1
CAN.G274.12 Capsicum annuum HOM05D006900 ORTHO05D008651 3.8e-34 150.2 246 41.9
unitig_748.g8700 Utricularia gibba HOM05D006900 ORTHO05D008651 3.8e-34 150.2 103 66.0
VMungo1215G0487 Vigna mungo HOM05D006900 ORTHO05D008651 3.8e-34 150.2 259 42.1
Phvul.003G114100 Phaseolus vulgaris HOM05D006900 ORTHO05D008651 6.5e-34 149.4 104 68.3
CDE12G0762 Ceratophyllum demersum HOM05D006900 ORTHO05D008651 1.2e-32 145.2 103 68.0
Hund03124 Selenicereus undatus HOM05D006900 ORTHO05D008651 7.9e-32 142.5 130 54.6
Os03g0308800 Oryza sativa ssp. japonica HOM05D006900 ORTHO05D008651 1.0e-31 142.1 102 63.7
Zm00001eb014810 Zea mays HOM05D006900 ORTHO05D008651 1.8e-31 141.4 102 64.7
Sed0008833 Sechium edule HOM05D006900 ORTHO05D008651 5.1e-31 139.8 201 43.8
vmacro15184 Vaccinium macrocarpon HOM05D006900 ORTHO05D008651 6.7e-31 139.4 261 39.1
AagrBONN_evm.TU.Sc2ySwM_368.516 Anthoceros agrestis HOM05D006900 ORTHO05D008651 9.1e-28 129.0 102 58.8
Mapoly0078s0010 Marchantia polymorpha HOM05D006900 ORTHO05D008651 9.1e-28 129.0 102 54.9
SEGI_12330 Sequoiadendron giganteum HOM05D006900 ORTHO05D008651 2.6e-27 127.5 103 55.3
SMO115G0152 Selaginella moellendorffii HOM05D006900 ORTHO05D008651 3.6e-24 117.1 102 54.9
CBR_g12177 Chara braunii HOM05D006900 ORTHO05D008651 6.7e-23 112.8 137 46.0
CSS0028196 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 7.4e-22 109.4 80 67.5
Pp3c1_20310 Physcomitrium patens HOM05D006900 ORTHO05D008651 1.7e-21 108.2 102 51.0
CSS0035140 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 8.2e-21 105.9 80 65.0
Cre09.g416200 Chlamydomonas reinhardtii HOM05D006900 ORTHO05D008651 5.5e-17 93.2 94 46.8
MCO01G208 Micromonas commoda HOM05D006900 ORTHO05D008651 4.5e-11 73.6 70 47.1
Gohir.A10G171950 Gossypium hirsutum HOM05D006900 ORTHO05D008651 2.2e-10 71.2 46 67.4
Gohir.A10G171900 Gossypium hirsutum HOM05D006900 ORTHO05D008651 8.5e-10 69.3 44 79.5
Cpa.g.sc9.62 Carica papaya HOM05D006900 ORTHO05D008651 6.8e-07 59.7 33 72.7


User provided reference genes

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