Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G4149 Cannabis sativa HOM05D001849 ORTHO05D004075 0.0e+00 2270.0 1322 100.0
Prupe.3G037300 Prunus persica HOM05D001849 ORTHO05D004075 0.0e+00 1274.2 1405 61.0
CiPaw.02G133700 Carya illinoinensis HOM05D001849 ORTHO05D004075 0.0e+00 1250.7 1398 60.8
CiPaw.01G215800 Carya illinoinensis HOM05D001849 ORTHO05D004075 0.0e+00 1228.0 1414 58.2
MD09G1178000 Malus domestica HOM05D001849 ORTHO05D004075 0.0e+00 1221.8 1389 59.3
MD17G1148700 Malus domestica HOM05D001849 ORTHO05D004075 0.0e+00 1220.7 1383 57.9
Thecc.06G125000 Theobroma cacao HOM05D001849 ORTHO05D004075 0.0e+00 1172.5 1410 59.2
RcHm_v2.0_Chr2g0146441 Rosa chinensis HOM05D001849 ORTHO05D004075 0.0e+00 1171.0 1410 59.1
Cfa003510 Carpinus fangiana HOM05D001849 ORTHO05D004075 0.0e+00 1162.5 1349 57.2
FvH4_6g35180 Fragaria vesca HOM05D001849 ORTHO05D004075 0.0e+00 1159.1 1391 61.0
QL05p003642 Quercus lobata HOM05D001849 ORTHO05D004075 0.0e+00 1151.7 1450 56.4
FAN14G5889 Fragaria x ananassa HOM05D001849 ORTHO05D004075 0.0e+00 1150.6 1415 59.6
FAN02G1816 Fragaria x ananassa HOM05D001849 ORTHO05D004075 0.0e+00 1135.9 1413 58.7
COL.COLO4_30798 Corchorus olitorius HOM05D001849 ORTHO05D004075 0.0e+00 1133.6 1400 58.8
Manes.04G148200 Manihot esculenta HOM05D001849 ORTHO05D004075 0.0e+00 1133.2 1398 58.2
FAN09G3103 Fragaria x ananassa HOM05D001849 ORTHO05D004075 0.0e+00 1129.4 1445 58.2
FAN05G2069 Fragaria x ananassa HOM05D001849 ORTHO05D004075 0.0e+00 1125.9 1440 58.1
Dinv37967 Davidia involucrata HOM05D001849 ORTHO05D004075 0.0e+00 1123.2 1372 57.2
TWI14G1157 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 0.0e+00 1121.3 1377 54.8
Duzib192G0748 Durio zibethinus HOM05D001849 ORTHO05D004075 0.0e+00 1120.1 1402 57.4
TWI59G0043 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 0.0e+00 1106.7 1375 55.7
Duzib235G1365 Durio zibethinus HOM05D001849 ORTHO05D004075 0.0e+00 1093.2 1389 56.9
Hma1.2p1_0229F.1_g096780 Hydrangea macrophylla HOM05D001849 ORTHO05D004075 0.0e+00 1083.2 1388 56.2
Ciclev10024725m.g Citrus clementina HOM05D001849 ORTHO05D004075 0.0e+00 1079.3 1301 58.3
Potri.001G165800 Populus trichocarpa HOM05D001849 ORTHO05D004075 0.0e+00 1078.5 1394 55.6
Ca_23413_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004075 0.0e+00 1076.6 1377 55.4
CSS0013236 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 4.0e-310 1068.5 1383 58.1
CSS0036669 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 9.0e-310 1067.4 1384 57.9
Gohir.D05G140900 Gossypium hirsutum HOM05D001849 ORTHO05D004075 2.9e-308 1062.4 1390 57.1
Sabra01G0127500 Salix brachista HOM05D001849 ORTHO05D004075 1.1e-307 1060.4 1380 55.1
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 3.2e-307 1058.9 1322 57.8
Lj3g0013610 Lotus japonicus HOM05D001849 ORTHO05D004075 2.1e-306 1056.2 1373 54.6
Sopen06g022460 Solanum pennellii HOM05D001849 ORTHO05D004075 2.7e-306 1055.8 1384 55.0
Lalb_Chr04g0253751 Lupinus albus HOM05D001849 ORTHO05D004075 5.1e-305 1051.6 1367 54.9
Gohir.A05G138700 Gossypium hirsutum HOM05D001849 ORTHO05D004075 4.3e-304 1048.5 1389 56.6
Phvul.010G125600 Phaseolus vulgaris HOM05D001849 ORTHO05D004075 6.2e-303 1044.6 1369 54.5
Gohir.D06G149500 Gossypium hirsutum HOM05D001849 ORTHO05D004075 1.8e-302 1043.1 1389 54.3
Gorai.009G145100 Gossypium raimondii HOM05D001849 ORTHO05D004075 5.2e-302 1041.6 1409 55.9
Gorai.010G174200 Gossypium raimondii HOM05D001849 ORTHO05D004075 2.0e-301 1039.6 1384 54.3
VMungo0331G0811 Vigna mungo HOM05D001849 ORTHO05D004075 7.6e-301 1037.7 1370 53.1
DCAR_026425 Daucus carota HOM05D001849 ORTHO05D004075 2.4e-299 1032.7 1378 54.6
CsaV3_7G034240 Cucumis sativus L. HOM05D001849 ORTHO05D004075 3.2e-299 1032.3 1371 53.7
arahy.Tifrunner.gnm1.ann1.M8Z2DU Arachis hypogaea HOM05D001849 ORTHO05D004075 1.7e-297 1026.5 1387 53.5
CAN.G1743.7 Capsicum annuum HOM05D001849 ORTHO05D004075 1.5e-296 1023.5 1378 54.4
arahy.Tifrunner.gnm1.ann1.NEIN3W Arachis hypogaea HOM05D001849 ORTHO05D004075 3.3e-296 1022.3 1385 53.4
Glyma.16G010400 Glycine max HOM05D001849 ORTHO05D004075 7.3e-296 1021.1 1384 53.2
Medtr8g021980 Medicago truncatula HOM05D001849 ORTHO05D004075 9.6e-296 1020.8 1372 53.7
Glyma.07G042100 Glycine max HOM05D001849 ORTHO05D004075 1.6e-295 1020.0 1397 54.1
Sed0014139 Sechium edule HOM05D001849 ORTHO05D004075 1.1e-291 1007.3 1373 51.9
Lalb_Chr10g0101311 Lupinus albus HOM05D001849 ORTHO05D004075 1.4e-291 1006.9 1369 53.0
Lalb_Chr17g0343441 Lupinus albus HOM05D001849 ORTHO05D004075 3.2e-291 1005.7 1362 52.8
Sabra03G0040600 Salix brachista HOM05D001849 ORTHO05D004075 4.6e-290 1001.9 1504 52.3
Psat4g166800 Pisum sativum HOM05D001849 ORTHO05D004075 4.3e-288 995.3 1365 52.5
TPR.G29998 Trifolium pratense HOM05D001849 ORTHO05D004075 1.6e-287 993.4 1359 52.8
MELO3C024333.2 Cucumis melo HOM05D001849 ORTHO05D004075 3.7e-287 992.3 1379 52.5
SalBow6G5403 Salvia bowleyana HOM05D001849 ORTHO05D004075 1.3e-281 973.8 1374 54.1
Dinv37845 Davidia involucrata HOM05D001849 ORTHO05D004075 6.5e-276 954.9 1198 59.7
Nitab4.5_0002716g0060 Nicotiana tabacum HOM05D001849 ORTHO05D004075 1.1e-275 954.1 1224 52.4
Potri.003G069200 Populus trichocarpa HOM05D001849 ORTHO05D004075 3.2e-275 952.6 1322 54.6
MSTRG.22534 Avicennia marina HOM05D001849 ORTHO05D004075 2.2e-271 939.9 1363 53.1
Aqoxy7G04079 Aquilegia oxysepala HOM05D001849 ORTHO05D004075 2.4e-270 936.4 1366 51.0
Nn8g38564 Nelumbo nucifera HOM05D001849 ORTHO05D004075 5.3e-270 935.3 1416 52.3
PGR102G3102 Punica granatum HOM05D001849 ORTHO05D004075 4.2e-267 925.6 1397 51.5
Gohir.A06G143000 Gossypium hirsutum HOM05D001849 ORTHO05D004075 4.6e-266 922.2 1379 52.1
GSVIVG01016716001 Vitis vinifera HOM05D001849 ORTHO05D004075 8.8e-265 917.9 1035 57.9
Hund18671 Selenicereus undatus HOM05D001849 ORTHO05D004075 1.1e-262 911.0 1382 48.5
Lj9C535T9 Lonicera japonica HOM05D001849 ORTHO05D004075 1.4e-259 900.6 1434 51.0
THA.LOC104812264 Tarenaya hassleriana HOM05D001849 ORTHO05D004075 5.5e-259 898.7 1229 51.9
Nitab4.5_0003137g0070 Nicotiana tabacum HOM05D001849 ORTHO05D004075 1.5e-256 890.6 1156 51.2
SalBow6G6581 Salvia bowleyana HOM05D001849 ORTHO05D004075 8.0e-250 868.2 1237 49.8
Sc15g0000590 Simmondsia chinensis HOM05D001849 ORTHO05D004075 1.0e-249 867.8 1383 49.1
Solyc06g063010.4 Solanum lycopersicum HOM05D001849 ORTHO05D004075 4.8e-247 859.0 959 54.1
EL10Ac7g16445 Beta vulgaris HOM05D001849 ORTHO05D004075 1.1e-246 857.8 1364 47.1
Cc04_g01030 Coffea canephora HOM05D001849 ORTHO05D004075 9.1e-246 854.7 1153 51.1
AT1G72390 Arabidopsis thaliana HOM05D001849 ORTHO05D004075 2.5e-243 846.7 1395 47.5
Aa31LG4G2730 Aethionema arabicum HOM05D001849 ORTHO05D004075 7.2e-243 845.1 1400 50.6
Peaxi162Scf00207g01546 Petunia axillaris HOM05D001849 ORTHO05D004075 1.2e-242 844.3 913 55.5
CARHR065290 Cardamine hirsuta HOM05D001849 ORTHO05D004075 2.0e-240 837.0 1408 46.3
Thhalv10018006m.g Eutrema salsugineum HOM05D001849 ORTHO05D004075 2.0e-240 837.0 1430 45.3
AL2G32060 Arabidopsis lyrata HOM05D001849 ORTHO05D004075 3.1e-238 829.7 1403 47.2
Carub.0002s1924 Capsella rubella HOM05D001849 ORTHO05D004075 4.1e-238 829.3 1380 48.7
ClCG09G001150 Citrullus lanatus HOM05D001849 ORTHO05D004075 2.0e-237 827.0 955 53.5
Cpa.g.sc25.150 Carica papaya HOM05D001849 ORTHO05D004075 2.7e-237 826.6 1163 55.2
BraA07t31416Z Brassica rapa HOM05D001849 ORTHO05D004075 3.8e-236 822.8 1408 46.3
A07p38580 Brassica napus HOM05D001849 ORTHO05D004075 1.5e-235 820.8 1396 46.3
BolC6t39719H Brassica oleracea HOM05D001849 ORTHO05D004075 6.8e-233 812.0 1415 46.5
Atru.chr1.4088 Acer truncatum HOM05D001849 ORTHO05D004075 3.7e-231 806.2 793 61.5
Migut.I01106 Erythranthe guttata HOM05D001849 ORTHO05D004075 4.1e-230 802.7 1238 47.6
C06p46750 Brassica napus HOM05D001849 ORTHO05D004075 5.4e-230 802.4 1415 46.4
Oeu000390.1 Olea europaea HOM05D001849 ORTHO05D004075 4.5e-229 799.3 1437 42.9
PSO724G0042 Papaver somniferum HOM05D001849 ORTHO05D004075 8.6e-228 795.0 1482 44.5
PSO386G0057 Papaver somniferum HOM05D001849 ORTHO05D004075 4.0e-225 786.2 1493 43.9
ECA234G1749 Erigeron canadensis HOM05D001849 ORTHO05D004075 7.0e-222 775.4 1348 49.3
AUR62009923 Chenopodium quinoa HOM05D001849 ORTHO05D004075 5.0e-220 769.2 1354 42.7
BcaC03g15374 Brassica carinata HOM05D001849 ORTHO05D004075 2.5e-219 766.9 1300 46.4
C02p29880 Brassica napus HOM05D001849 ORTHO05D004075 2.5e-219 766.9 1300 46.4
BolC2t09038H Brassica oleracea HOM05D001849 ORTHO05D004075 4.3e-219 766.1 1300 46.4
BraA02t06845Z Brassica rapa HOM05D001849 ORTHO05D004075 9.5e-219 765.0 1382 44.5
A02p17980 Brassica napus HOM05D001849 ORTHO05D004075 2.3e-217 760.4 1296 45.9
Sp5g27470 Schrenkiella parvula HOM05D001849 ORTHO05D004075 3.1e-217 760.0 1372 43.6
BcaB05g24751 Brassica carinata HOM05D001849 ORTHO05D004075 4.4e-216 756.1 1122 46.3
HanXRQChr10g0311861 Helianthus annuus HOM05D001849 ORTHO05D004075 8.3e-215 751.9 1364 49.5
Ah.15g095140 Amaranthus hybridus HOM05D001849 ORTHO05D004075 5.6e-211 739.2 1359 45.3
Oeu011098.1 Olea europaea HOM05D001849 ORTHO05D004075 3.4e-208 729.9 853 54.0
unitig_747.g21722 Utricularia gibba HOM05D001849 ORTHO05D004075 1.3e-207 728.0 1373 43.0
HanXRQChr12g0360181 Helianthus annuus HOM05D001849 ORTHO05D004075 2.9e-207 726.9 1367 43.8
SGA_v2.0_scaffold71G23886 Striga asiatica HOM05D001849 ORTHO05D004075 5.1e-204 716.1 1398 44.3
MBI19_g29883_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 6.0e-197 692.6 927 49.7
TAR626G0481 Trochodendron aralioides HOM05D001849 ORTHO05D004075 2.3e-196 690.6 1085 52.8
Manes.11G016300 Manihot esculenta HOM05D001849 ORTHO05D004075 6.6e-196 689.1 1169 45.4
Medtr5g009590 Medicago truncatula HOM05D001849 ORTHO05D004075 2.4e-185 654.1 1024 45.5
AUR62001442 Chenopodium quinoa HOM05D001849 ORTHO05D004075 1.5e-184 651.4 1350 38.2
Actinidia32208 Actinidia chinensis HOM05D001849 ORTHO05D004075 2.2e-183 647.5 1018 53.5
HPP92_011068 Vanilla planifolia HOM05D001849 ORTHO05D004075 3.8e-183 646.7 1379 43.1
Haze_16065 Corylus avellana HOM05D001849 ORTHO05D004075 1.9e-182 644.4 541 66.9
Nitab4.5_0012739g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004075 6.9e-177 625.9 1080 44.1
Nitab4.5_0004322g0020 Nicotiana tabacum HOM05D001849 ORTHO05D004075 6.2e-170 602.8 811 49.0
PSO386G0247 Papaver somniferum HOM05D001849 ORTHO05D004075 9.6e-163 578.9 1368 39.8
BcaB03g14988 Brassica carinata HOM05D001849 ORTHO05D004075 1.1e-142 512.3 1219 37.3
CDE06G0789 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 8.8e-140 502.7 1273 37.0
Zm00001eb203360 Zea mays HOM05D001849 ORTHO05D004075 8.8e-140 502.7 1235 37.6
ATR0681G273 Amborella trichopoda HOM05D001849 ORTHO05D004075 2.2e-138 498.0 1248 37.7
PSO724G0283 Papaver somniferum HOM05D001849 ORTHO05D004075 4.5e-136 490.3 1229 38.4
TAR622G0522 Trochodendron aralioides HOM05D001849 ORTHO05D004075 2.3e-116 424.9 1377 34.2
QL05p003384 Quercus lobata HOM05D001849 ORTHO05D004075 2.5e-110 404.8 899 46.8
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 4.9e-106 390.6 440 53.4
Actinidia32207 Actinidia chinensis HOM05D001849 ORTHO05D004075 6.3e-106 390.2 323 65.3
Nn3g17987 Nelumbo nucifera HOM05D001849 ORTHO05D004075 1.5e-91 342.4 1386 30.2
ECA247G2654 Erigeron canadensis HOM05D001849 ORTHO05D004075 5.4e-89 334.0 1289 30.8
MBI16_g25623_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 8.6e-87 326.6 1418 31.0
Medtr8g106435 Medicago truncatula HOM05D001849 ORTHO05D004075 8.6e-87 326.6 492 45.1
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 1.6e-85 322.4 361 53.2
CDE07G1198 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 1.3e-74 286.2 1155 29.8
SEGI_32525 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 1.8e-68 265.8 1304 32.7
Actinidia14933 Actinidia chinensis HOM05D001849 ORTHO05D004075 3.9e-63 248.1 990 29.9
Prupe.1G319400 Prunus persica HOM05D001849 ORTHO05D004075 2.0e-59 235.7 855 29.2
QL01p003145 Quercus lobata HOM05D001849 ORTHO05D004075 1.4e-57 229.6 861 30.0
Dinv16157 Davidia involucrata HOM05D001849 ORTHO05D004075 2.7e-56 225.3 973 28.6
vmacro15055 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 2.7e-56 225.3 212 59.4
SEGI_18725 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 1.3e-55 223.0 1083 28.2
Haze_16071 Corylus avellana HOM05D001849 ORTHO05D004075 3.9e-55 221.5 376 44.4
SHI29649 Sapria himalayana HOM05D001849 ORTHO05D004075 8.7e-55 220.3 439 41.9
Atru.chr11.324 Acer truncatum HOM05D001849 ORTHO05D004075 4.3e-54 218.0 340 42.1
Cfa015821 Carpinus fangiana HOM05D001849 ORTHO05D004075 1.5e-51 209.5 338 41.7
TAR626G0936 Trochodendron aralioides HOM05D001849 ORTHO05D004075 6.5e-50 204.1 215 59.1
Rhsim09G0102300 Rhododendron simsii HOM05D001849 ORTHO05D004075 3.2e-49 201.8 874 28.9
Lsat_1_v5_gn_1_37801 Lactuca sativa HOM05D001849 ORTHO05D004075 1.1e-44 186.8 917 26.8
Lj6A751T55 Lonicera japonica HOM05D001849 ORTHO05D004075 1.4e-44 186.4 192 54.2
HanXRQChr04g0094421 Helianthus annuus HOM05D001849 ORTHO05D004075 2.4e-44 185.7 238 46.6
Psat4g083360 Pisum sativum HOM05D001061 ORTHO05D006881 9.0e-44 183.7 213 52.6
CANSAT01G2891 Cannabis sativa HOM05D001849 ORTHO05D004075 1.5e-43 183.0 928 27.7
Mapoly0055s0059 Marchantia polymorpha HOM05D001849 ORTHO05D004075 7.6e-43 180.6 1121 25.7
Dinv04913 Davidia involucrata HOM05D001849 ORTHO05D004075 1.7e-42 179.5 875 27.9
Haze_00674 Corylus avellana HOM05D001849 ORTHO05D004075 4.2e-41 174.9 1073 26.0
CiPaw.05G244500 Carya illinoinensis HOM05D001849 ORTHO05D004075 7.4e-38 164.1 691 27.8
Pp3c3_3510 Physcomitrium patens HOM05D001849 ORTHO05D004075 6.3e-37 161.0 1032 25.1
SHI29651 Sapria himalayana HOM05D001849 ORTHO05D004075 3.1e-36 158.7 575 44.9
CSS0014980 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 7.7e-35 154.1 711 25.9
Pp3c13_8340 Physcomitrium patens HOM05D001849 ORTHO05D004075 1.3e-29 136.7 997 22.2
AagrBONN_evm.TU.Sc2ySwM_344.4287 Anthoceros agrestis HOM05D001849 ORTHO05D004075 2.2e-29 136.0 150 43.3
BcaC03g15372 Brassica carinata HOM05D001849 ORTHO05D004075 4.2e-25 121.7 493 28.6
SHI29648 Sapria himalayana HOM05D001849 ORTHO05D004075 3.6e-24 118.6 85 67.1
Oeu011104.1 Olea europaea HOM05D001849 ORTHO05D004075 1.5e-22 113.2 218 60.6
Cpa.g.sc25.149 Carica papaya HOM05D020865 ORTHO05D004075 3.3e-22 112.1 132 51.5
CBR_g31688 Chara braunii HOM05D001849 ORTHO05D004075 2.2e-21 109.4 171 34.5
Manes.14G108850 Manihot esculenta HOM05D001849 ORTHO05D004075 6.3e-21 107.8 834 24.7
Medtr8g106415 Medicago truncatula HOM05D001849 ORTHO05D004075 3.1e-20 105.5 91 59.3
BcaB03g14986 Brassica carinata HOM05D001849 ORTHO05D004075 7.0e-20 104.4 152 45.4
vmacro10614 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 5.9e-19 101.3 89 57.3
SHI29650 Sapria himalayana HOM05D001849 ORTHO05D004075 2.1e-16 92.8 137 39.4
Oeu013447.1 Olea europaea HOM05D001849 ORTHO05D004075 3.3e-14 85.5 174 39.1
MCO11G122 Micromonas commoda HOM05D001849 ORTHO05D004075 8.2e-13 80.9 86 48.8
MBI19_g29884_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 4.1e-12 78.6 117 58.1
Os10g0391100 Oryza sativa ssp. japonica HOM05D001849 ORTHO05D004075 5.0e-10 71.6 258 34.5
Manes.06G063600 Manihot esculenta HOM05D001849 ORTHO05D004075 1.9e-09 69.7 69 56.5
Medtr3g035000 Medicago truncatula HOM05D000079 ORTHO05D004075 3.6e-08 65.5 53 56.6
Nitab4.5_0006425g0080 Nicotiana tabacum HOM05D001849 ORTHO05D004075 3.0e-07 62.4 285 35.1
SEGI_04298 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 5.2e-07 61.6 135 35.6
Atru.chr11.323 Acer truncatum HOM05D001849 ORTHO05D004075 6.8e-07 61.2 376 26.1
SEGI_02030 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 2.6e-06 59.3 59 52.5
BcaC02g11963 Brassica carinata HOM05D001675 ORTHO05D021664 9.8e-06 57.4 73 47.9


User provided reference genes

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