Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G3403 Cannabis sativa HOM05D006029 ORTHO05D007439 1.9e-64 248.8 111 100.0
Cfa010653 Carpinus fangiana HOM05D006029 ORTHO05D007439 9.0e-46 186.8 110 69.1
arahy.Tifrunner.gnm1.ann1.A8XVJK Arachis hypogaea HOM05D006029 ORTHO05D007439 3.4e-45 184.9 110 70.0
arahy.Tifrunner.gnm1.ann1.ZU3BRN Arachis hypogaea HOM05D006029 ORTHO05D007439 3.4e-45 184.9 110 70.0
CiPaw.02G042300 Carya illinoinensis HOM05D006029 ORTHO05D007439 3.4e-45 184.9 110 66.4
ClCG10G013250 Citrullus lanatus HOM05D006029 ORTHO05D007439 1.7e-44 182.6 110 69.1
Glyma.18G179600 Glycine max HOM05D006029 ORTHO05D007439 2.9e-44 181.8 110 67.3
Lalb_Chr04g0261421 Lupinus albus HOM05D006029 ORTHO05D007439 2.9e-44 181.8 110 65.5
MELO3C026899.2 Cucumis melo HOM05D006029 ORTHO05D007439 1.1e-43 179.9 110 68.2
CsaV3_3G043380 Cucumis sativus L. HOM05D006029 ORTHO05D007439 1.1e-43 179.9 110 68.2
Glyma.07G131200 Glycine max HOM05D006029 ORTHO05D007439 2.4e-43 178.7 110 67.3
Phvul.008G101000 Phaseolus vulgaris HOM05D006029 ORTHO05D007439 7.1e-43 177.2 110 68.2
Sed0019070 Sechium edule HOM05D006029 ORTHO05D007439 9.3e-43 176.8 110 65.5
Sed0007850 Sechium edule HOM05D006029 ORTHO05D007439 1.2e-42 176.4 110 67.3
GSVIVG01027190001 Vitis vinifera HOM05D006029 ORTHO05D007439 1.6e-42 176.0 110 65.5
Rhsim01G0175700 Rhododendron simsii HOM05D006029 ORTHO05D007439 3.0e-41 171.8 110 62.7
vmacro12594 Vaccinium macrocarpon HOM05D006029 ORTHO05D007439 3.0e-41 171.8 110 62.7
Lj1g0014790 Lotus japonicus HOM05D006029 ORTHO05D007439 1.5e-40 169.5 110 64.5
Lj1g0022243 Lotus japonicus HOM05D006029 ORTHO05D007439 1.5e-40 169.5 110 64.5
PGR102G2016 Punica granatum HOM05D006029 ORTHO05D007439 1.9e-40 169.1 111 64.0
TAR374G1259 Trochodendron aralioides HOM05D006029 ORTHO05D007439 3.3e-40 168.3 110 64.5
Eucgr.E03439 Eucalyptus grandis HOM05D006029 ORTHO05D007439 4.3e-40 167.9 111 62.2
Eucgr.E03441 Eucalyptus grandis HOM05D006029 ORTHO05D007439 4.3e-40 167.9 111 62.2
Eucgr.E03442 Eucalyptus grandis HOM05D006029 ORTHO05D007439 4.3e-40 167.9 111 62.2
Eucgr.L01751 Eucalyptus grandis HOM05D006029 ORTHO05D007439 4.3e-40 167.9 111 62.2
Gohir.D08G145300 Gossypium hirsutum HOM05D006029 ORTHO05D007439 7.3e-40 167.2 111 63.1
Gorai.004G150300 Gossypium raimondii HOM05D006029 ORTHO05D007439 7.3e-40 167.2 111 63.1
MD01G1085300 Malus domestica HOM05D006029 ORTHO05D007439 7.3e-40 167.2 108 66.7
TWI36G0126 Tripterygium wilfordii HOM05D006029 ORTHO05D007439 9.6e-40 166.8 110 61.8
Gohir.A08G124200 Gossypium hirsutum HOM05D006029 ORTHO05D007439 1.3e-39 166.4 111 63.1
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 1.6e-39 166.0 97 71.1
Gohir.D12G270400 Gossypium hirsutum HOM05D006029 ORTHO05D007439 2.1e-39 165.6 111 62.2
Gorai.008G290700 Gossypium raimondii HOM05D006029 ORTHO05D007439 2.1e-39 165.6 111 62.2
Ciclev10022957m.g Citrus clementina HOM05D006029 ORTHO05D007439 3.6e-39 164.9 111 63.1
unitig_60.g25801 Utricularia gibba HOM05D006029 ORTHO05D007439 3.6e-39 164.9 110 61.8
COL.COLO4_06245 Corchorus olitorius HOM05D006029 ORTHO05D007439 8.1e-39 163.7 111 61.3
Psat3g005240 Pisum sativum HOM05D006029 ORTHO05D007439 1.1e-38 163.3 110 63.6
Prupe.2G192900 Prunus persica HOM05D006029 ORTHO05D007439 5.3e-38 161.0 108 63.9
Duzib138G0795 Durio zibethinus HOM05D006029 ORTHO05D007439 9.0e-38 160.2 111 62.2
Gohir.A12G269900 Gossypium hirsutum HOM05D006029 ORTHO05D007439 9.0e-38 160.2 111 60.4
Thecc.01G338500 Theobroma cacao HOM05D006029 ORTHO05D007439 9.0e-38 160.2 113 63.7
Manes.01G243500 Manihot esculenta HOM05D006029 ORTHO05D007439 1.5e-37 159.5 111 60.4
Oeu043218.1 Olea europaea HOM05D006029 ORTHO05D007439 3.4e-37 158.3 110 60.0
Lj3g0023283 Lotus japonicus HOM05D006029 ORTHO05D007439 7.6e-37 157.1 111 60.4
Hma1.2p1_1482F.1_g286210 Hydrangea macrophylla HOM05D006029 ORTHO05D007439 9.9e-37 156.8 110 55.5
Solyc05g055890.3 Solanum lycopersicum HOM05D006029 ORTHO05D007439 1.7e-36 156.0 110 60.0
Sopen05g034290 Solanum pennellii HOM05D006029 ORTHO05D007439 1.7e-36 156.0 110 60.0
MSTRG.17362 Avicennia marina HOM05D006029 ORTHO05D007439 2.2e-36 155.6 111 62.2
Cc06_g21100 Coffea canephora HOM05D006029 ORTHO05D007439 2.2e-36 155.6 111 60.4
Peaxi162Scf00156g00617 Petunia axillaris HOM05D006029 ORTHO05D007439 2.2e-36 155.6 110 58.2
Cc00_g02440 Coffea canephora HOM05D006029 ORTHO05D007439 4.9e-36 154.5 111 60.4
HanXRQChr05g0130881 Helianthus annuus HOM05D006029 ORTHO05D007439 6.4e-36 154.1 111 61.3
DCAR_006981 Daucus carota HOM05D006425 ORTHO05D007312 1.1e-35 153.3 110 56.4
Lsat_1_v5_gn_4_30800 Lactuca sativa HOM05D006029 ORTHO05D007439 1.9e-35 152.5 111 61.3
PGSC0003DMG402023468 Solanum tuberosum HOM05D006029 ORTHO05D007439 1.9e-35 152.5 110 58.2
TPR.G4810 Trifolium pratense HOM05D006029 ORTHO05D007439 3.2e-35 151.8 111 62.2
FvH4_7g17060 Fragaria vesca HOM05D006029 ORTHO05D007439 7.1e-35 150.6 108 59.3
FAN01G1288 Fragaria x ananassa HOM05D006029 ORTHO05D007439 7.1e-35 150.6 108 59.3
FAN03G2913 Fragaria x ananassa HOM05D006029 ORTHO05D007439 7.1e-35 150.6 108 59.3
FAN06G2526 Fragaria x ananassa HOM05D006029 ORTHO05D007439 7.1e-35 150.6 108 59.3
FAN06G3186 Fragaria x ananassa HOM05D006029 ORTHO05D007439 7.1e-35 150.6 108 59.3
FAN10G2808 Fragaria x ananassa HOM05D006029 ORTHO05D007439 7.1e-35 150.6 108 59.3
FAN10G3748 Fragaria x ananassa HOM05D006029 ORTHO05D007439 7.1e-35 150.6 108 59.3
CAN.G694.9 Capsicum annuum HOM05D006029 ORTHO05D007439 2.1e-34 149.1 110 57.3
Potri.012G015900 Populus trichocarpa HOM05D006029 ORTHO05D007439 2.7e-34 148.7 111 56.8
RcHm_v2.0_Chr1g0360471 Rosa chinensis HOM05D006029 ORTHO05D007439 2.7e-34 148.7 108 59.3
Haze_15690 Corylus avellana HOM05D006029 ORTHO05D007439 3.5e-34 148.3 86 69.8
Nn1g00349 Nelumbo nucifera HOM05D006029 ORTHO05D007439 1.0e-33 146.7 111 55.0
Sabra12G0016400 Salix brachista HOM05D006029 ORTHO05D007439 1.0e-33 146.7 111 55.9
Migut.B01899 Erythranthe guttata HOM05D006029 ORTHO05D007439 1.8e-33 146.0 112 59.8
Peaxi162Scf00740g00556 Petunia axillaris HOM05D006029 ORTHO05D007439 1.5e-32 142.9 99 59.6
CSS0011460 Camellia sinensis var. sinensis HOM05D006029 ORTHO05D007439 2.5e-32 142.1 93 64.5
Medtr5g030180 Medicago truncatula HOM05D006029 ORTHO05D007439 7.4e-32 140.6 116 55.2
SGA_v2.0_scaffold22G09953 Striga asiatica HOM05D006029 ORTHO05D007439 1.3e-31 139.8 111 59.5
HPP92_017871 Vanilla planifolia HOM05D006029 ORTHO05D007439 1.6e-31 139.4 110 53.6
Medtr7g116750 Medicago truncatula HOM05D006029 ORTHO05D007439 2.1e-31 139.0 116 52.6
AT4G07950 Arabidopsis thaliana HOM05D006029 ORTHO05D007439 2.8e-31 138.7 110 56.4
Carub.0003s3000 Capsella rubella HOM05D006029 ORTHO05D007439 1.4e-30 136.3 110 55.5
AL1G11270 Arabidopsis lyrata HOM05D006029 ORTHO05D007439 1.8e-30 136.0 110 55.5
AT1G01210 Arabidopsis thaliana HOM05D006029 ORTHO05D007439 3.1e-30 135.2 110 54.5
HanXRQChr17g0563271 Helianthus annuus HOM05D006029 ORTHO05D007439 6.9e-30 134.0 102 58.8
CARHR001260 Cardamine hirsuta HOM05D006029 ORTHO05D007439 9.0e-30 133.7 110 54.5
Sc02g0002910 Simmondsia chinensis HOM05D006029 ORTHO05D007439 1.5e-29 132.9 110 50.9
Os02g0672700 Oryza sativa ssp. japonica HOM05D006029 ORTHO05D007439 2.0e-29 132.5 111 54.1
Thhalv10009170m.g Eutrema salsugineum HOM05D006029 ORTHO05D007439 3.4e-29 131.7 110 50.9
BcaC07g42429 Brassica carinata HOM05D006029 ORTHO05D007439 5.8e-29 131.0 110 50.9
A03p11160 Brassica napus HOM05D000069 ORTHO05D021930 5.8e-29 131.0 110 50.9
A09p39050 Brassica napus HOM05D006029 ORTHO05D007439 5.8e-29 131.0 110 50.9
A09p68990 Brassica napus HOM05D006029 ORTHO05D007439 5.8e-29 131.0 110 50.9
BolC3t13750H Brassica oleracea HOM05D006029 ORTHO05D007439 5.8e-29 131.0 110 50.9
BolC8t52870H Brassica oleracea HOM05D006029 ORTHO05D007439 5.8e-29 131.0 110 50.9
BraA03t10431Z Brassica rapa HOM05D006029 ORTHO05D007439 5.8e-29 131.0 110 50.9
BraA09t42236Z Brassica rapa HOM05D006029 ORTHO05D007439 5.8e-29 131.0 110 50.9
BraA09t39405Z Brassica rapa HOM05D006029 ORTHO05D007439 7.6e-29 130.6 110 50.9
C03p12870 Brassica napus HOM05D006029 ORTHO05D007439 4.9e-28 127.9 110 50.0
Cpa.g.sc96.66 Carica papaya HOM05D006029 ORTHO05D007439 6.4e-28 127.5 111 51.4
THA.LOC104815886 Tarenaya hassleriana HOM05D006029 ORTHO05D007439 1.4e-27 126.3 110 50.0
Sp1g01080 Schrenkiella parvula HOM05D006029 ORTHO05D007439 3.2e-27 125.2 110 49.1
PSO170G0977 Papaver somniferum HOM05D006029 ORTHO05D007439 4.2e-27 124.8 111 54.1
PSO782G1905 Papaver somniferum HOM05D006029 ORTHO05D007439 4.2e-27 124.8 111 53.2
PSO782G2649 Papaver somniferum HOM05D006029 ORTHO05D007439 4.2e-27 124.8 111 53.2
PSO782G4464 Papaver somniferum HOM05D006029 ORTHO05D007439 4.2e-27 124.8 111 53.2
Hund17067 Selenicereus undatus HOM05D006029 ORTHO05D007439 4.2e-27 124.8 110 53.6
Lsat_1_v5_gn_7_7741 Lactuca sativa HOM05D006029 ORTHO05D007439 5.5e-27 124.4 110 53.6
Zm00001eb187060 Zea mays HOM05D006029 ORTHO05D007439 7.1e-27 124.0 111 50.5
QL08p046069 Quercus lobata HOM05D006029 ORTHO05D007439 2.1e-26 122.5 68 70.6
EL10Ac5g10924 Beta vulgaris HOM05D006029 ORTHO05D007439 3.5e-26 121.7 110 50.9
Nitab4.5_0000476g0280 Nicotiana tabacum HOM05D006029 ORTHO05D007439 3.5e-26 121.7 85 58.8
Lsat_1_v5_gn_6_63820 Lactuca sativa HOM05D006029 ORTHO05D007439 3.9e-25 118.2 137 46.7
Pp3c15_5550 Physcomitrium patens HOM05D006029 ORTHO05D007439 7.4e-24 114.0 111 45.9
AagrBONN_evm.TU.Sc2ySwM_117.3630 Anthoceros agrestis HOM05D006029 ORTHO05D007439 1.3e-23 113.2 111 45.9
ATR0751G147 Amborella trichopoda HOM05D006029 ORTHO05D007439 6.2e-23 110.9 111 48.6
Aa31LG1G10580 Aethionema arabicum HOM05D006029 ORTHO05D007439 4.0e-22 108.2 110 40.9
Aqoxy4G03109 Aquilegia oxysepala HOM05D006029 ORTHO05D007439 1.5e-21 106.3 111 45.9
Dinv34229 Davidia involucrata HOM05D006425 ORTHO05D007312 1.7e-20 102.8 70 60.0
Nitab4.5_0009816g0020 Nicotiana tabacum HOM05D006029 ORTHO05D007439 1.7e-20 102.8 68 60.3
Rhsim07G0002100 Rhododendron simsii HOM05D006029 ORTHO05D007439 4.2e-19 98.2 73 54.8
Cre02.g102400 Chlamydomonas reinhardtii HOM05D006029 ORTHO05D007439 1.6e-18 96.3 109 38.5
Mapoly0101s0063 Marchantia polymorpha HOM05D006029 ORTHO05D007439 2.7e-18 95.5 111 38.7
vmacro23448 Vaccinium macrocarpon HOM05D006029 ORTHO05D007439 2.7e-18 95.5 65 61.5
SMO159G0009 Selaginella moellendorffii HOM05D006029 ORTHO05D007439 2.3e-17 92.4 111 40.5
Lsat_1_v5_gn_6_81300 Lactuca sativa HOM05D006029 ORTHO05D007439 3.0e-17 92.0 70 58.6
Cc08_g08090 Coffea canephora HOM05D006029 ORTHO05D007439 5.1e-17 91.3 55 65.5
Atru.chr5.715 Acer truncatum HOM05D006029 ORTHO05D007439 8.7e-17 90.5 74 52.7
MCO11G240 Micromonas commoda HOM05D006029 ORTHO05D007439 2.5e-16 89.0 111 37.8
Ca_09543_v3 Cicer arietinum L. HOM05D006029 ORTHO05D007439 1.6e-15 86.3 68 58.8
CBR_g49523 Chara braunii HOM05D006029 ORTHO05D007439 4.8e-15 84.7 98 38.8
Carub.0003s3001 Capsella rubella HOM05D003869 ORTHO05D004718 4.5e-13 78.2 69 50.7
SMO347G0197 Selaginella moellendorffii HOM05D006029 ORTHO05D007439 1.4e-11 73.2 111 35.1
CBR_g31408 Chara braunii HOM05D006029 ORTHO05D007439 6.7e-09 64.3 71 38.0
arahy.Tifrunner.gnm1.ann1.TKX6L5 Arachis hypogaea HOM05D005168 ORTHO05D006358 5.7e-08 61.2 113 33.6
arahy.Tifrunner.gnm1.ann1.GU7A1M Arachis hypogaea HOM05D005168 ORTHO05D006358 3.7e-07 58.5 113 32.7
Cre01.g018000 Chlamydomonas reinhardtii HOM05D005168 ORTHO05D006358 4.8e-07 58.2 120 32.5
SEGI_04309 Sequoiadendron giganteum HOM05D005168 ORTHO05D006358 4.8e-07 58.2 117 29.9
CSS0038486 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 1.1e-06 57.0 108 32.4
PRCOL_00000799 Prasinoderma coloniale HOM05D006029 ORTHO05D007439 1.4e-06 56.6 95 34.7
Medtr3g102420 Medicago truncatula HOM05D005168 ORTHO05D006358 1.8e-06 56.2 102 32.4
Glyma.03G178900 Glycine max HOM05D005168 ORTHO05D006358 4.1e-06 55.1 114 31.6
THA.LOC104811420 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 4.1e-06 55.1 114 30.7
THA.LOC104825468 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 5.3e-06 54.7 114 28.9
THA.LOC104825467 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 6.9e-06 54.3 114 28.9


User provided reference genes

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