Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G2522 Cannabis sativa HOM05D005539 ORTHO05D006644 0.0e+00 1602.0 801 100.0
RcHm_v2.0_Chr1g0370081 Rosa chinensis HOM05D005539 ORTHO05D006644 0.0e+00 1157.9 806 72.8
Gohir.A10G235300 Gossypium hirsutum HOM05D005539 ORTHO05D006644 0.0e+00 1143.6 812 71.8
Manes.10G013600 Manihot esculenta HOM05D005539 ORTHO05D006644 0.0e+00 1142.9 806 72.0
Gohir.D10G247700 Gossypium hirsutum HOM05D005539 ORTHO05D006644 0.0e+00 1141.7 812 71.8
CiPaw.01G297900 Carya illinoinensis HOM05D005539 ORTHO05D006644 0.0e+00 1140.6 805 71.3
Gorai.011G286200 Gossypium raimondii HOM05D005539 ORTHO05D006644 0.0e+00 1135.6 812 71.6
MD01G1152200 Malus domestica HOM05D005539 ORTHO05D006644 0.0e+00 1133.2 808 71.2
Thecc.10G020000 Theobroma cacao HOM05D005539 ORTHO05D006644 0.0e+00 1131.7 807 71.9
FvH4_7g24380 Fragaria vesca HOM05D005539 ORTHO05D006644 0.0e+00 1129.4 806 71.2
Duzib106G1755 Durio zibethinus HOM05D005539 ORTHO05D006644 0.0e+00 1128.6 809 71.7
Prupe.2G249200 Prunus persica HOM05D005539 ORTHO05D006644 0.0e+00 1128.2 807 71.7
Ciclev10030725m.g Citrus clementina HOM05D005539 ORTHO05D006644 0.0e+00 1127.1 807 70.8
Potri.010G189700 Populus trichocarpa HOM05D005539 ORTHO05D006644 0.0e+00 1124.8 809 71.0
COL.COLO4_25704 Corchorus olitorius HOM05D005539 ORTHO05D006644 0.0e+00 1116.3 807 70.8
GSVIVG01032835001 Vitis vinifera HOM05D005539 ORTHO05D006644 0.0e+00 1116.3 810 70.0
FAN10G0075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 0.0e+00 1115.5 804 70.6
FAN01G2659 Fragaria x ananassa HOM05D005539 ORTHO05D006644 0.0e+00 1114.4 804 70.5
TAR369G0030 Trochodendron aralioides HOM05D005539 ORTHO05D006644 0.0e+00 1114.4 812 68.8
Hma1.2p1_0703F.1_g206530 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 0.0e+00 1113.6 816 68.8
Atru.chr12.24 Acer truncatum HOM05D005539 ORTHO05D006644 0.0e+00 1111.3 809 70.1
Sabra10G0146300 Salix brachista HOM05D005539 ORTHO05D006644 0.0e+00 1102.8 831 67.9
FAN03G1336 Fragaria x ananassa HOM05D005539 ORTHO05D006644 0.0e+00 1100.1 804 70.0
Potri.008G067600 Populus trichocarpa HOM05D005539 ORTHO05D006644 0.0e+00 1092.0 808 68.6
Cpa.g.sc19.181 Carica papaya HOM05D005539 ORTHO05D006644 0.0e+00 1091.3 811 68.6
Eucgr.J00217 Eucalyptus grandis HOM05D005539 ORTHO05D006644 5.5e-312 1074.3 810 66.3
Lj8A68G37 Lonicera japonica HOM05D005539 ORTHO05D006644 1.1e-310 1069.7 813 66.9
Sed0009998 Sechium edule HOM05D005539 ORTHO05D006644 4.2e-310 1067.8 813 66.3
Rhsim09G0176800 Rhododendron simsii HOM05D005539 ORTHO05D006644 4.7e-306 1054.3 814 67.0
CsaV3_5G010080 Cucumis sativus L. HOM05D005539 ORTHO05D006644 6.8e-305 1050.4 820 65.1
PGR044G2440 Punica granatum HOM05D005539 ORTHO05D006644 8.9e-305 1050.0 810 66.8
FAN06G4384 Fragaria x ananassa HOM05D005539 ORTHO05D006644 4.4e-304 1047.7 806 67.5
Haze_17219 Corylus avellana HOM05D005539 ORTHO05D006644 1.7e-303 1045.8 869 63.3
MELO3C025184.2 Cucumis melo HOM05D005539 ORTHO05D006644 2.9e-303 1045.0 822 65.2
Nn2g13702 Nelumbo nucifera HOM05D005539 ORTHO05D006644 2.9e-303 1045.0 811 64.4
EL10Ac2g04818 Beta vulgaris HOM05D005539 ORTHO05D006644 4.2e-302 1041.2 817 64.5
Phvul.001G242300 Phaseolus vulgaris HOM05D005539 ORTHO05D006644 1.7e-300 1035.8 791 67.0
Glyma.11G229000 Glycine max HOM05D005539 ORTHO05D006644 2.1e-298 1028.9 789 67.3
VMungo1383G3500 Vigna mungo HOM05D005539 ORTHO05D006644 3.6e-298 1028.1 792 66.4
Peaxi162Scf00825g00123 Petunia axillaris HOM05D005539 ORTHO05D006644 4.8e-298 1027.7 786 67.0
Hund15944 Selenicereus undatus HOM05D005539 ORTHO05D006644 2.6e-296 1021.9 814 63.4
Actinidia29697 Actinidia chinensis HOM05D005539 ORTHO05D006644 2.4e-294 1015.4 727 70.6
Lalb_Chr15g0084151 Lupinus albus HOM05D005539 ORTHO05D006644 3.2e-294 1015.0 786 67.0
arahy.Tifrunner.gnm1.ann1.4ME2IF Arachis hypogaea HOM05D005539 ORTHO05D006644 1.2e-293 1013.1 786 66.5
AUR62012239 Chenopodium quinoa HOM05D005539 ORTHO05D006644 6.0e-293 1010.7 820 62.7
arahy.Tifrunner.gnm1.ann1.W7ADHZ Arachis hypogaea HOM05D005539 ORTHO05D006644 1.3e-292 1009.6 786 66.5
AUR62022871 Chenopodium quinoa HOM05D005539 ORTHO05D006644 1.9e-291 1005.7 830 62.2
Medtr3g070390 Medicago truncatula HOM05D005539 ORTHO05D006644 1.9e-291 1005.7 788 65.5
Sopen11g010350 Solanum pennellii HOM05D005539 ORTHO05D006644 2.5e-291 1005.4 805 64.7
Lj6g0015972 Lotus japonicus HOM05D005539 ORTHO05D006644 3.6e-290 1001.5 793 65.7
DCAR_011807 Daucus carota HOM05D005539 ORTHO05D006644 4.8e-290 1001.1 804 64.2
Ca_15119_v3 Cicer arietinum L. HOM05D005539 ORTHO05D006644 1.8e-289 999.2 787 65.8
vmacro10050 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 4.0e-289 998.0 798 66.0
ClCG07G004120 Citrullus lanatus HOM05D005539 ORTHO05D006644 5.3e-289 997.7 812 62.9
CAN.G1694.1 Capsicum annuum HOM05D005539 ORTHO05D006644 9.0e-289 996.9 817 63.8
ECA238G2434 Erigeron canadensis HOM05D005539 ORTHO05D006644 1.2e-288 996.5 826 62.2
Lsat_1_v5_gn_2_122921 Lactuca sativa HOM05D005539 ORTHO05D006644 1.5e-288 996.1 787 65.2
HanXRQChr14g0459831 Helianthus annuus HOM05D005539 ORTHO05D006644 2.6e-288 995.3 821 62.4
Actinidia33928 Actinidia chinensis HOM05D005539 ORTHO05D006644 1.9e-286 989.2 810 63.5
Psat5g128120 Pisum sativum HOM05D005539 ORTHO05D006644 2.4e-286 988.8 788 65.4
THA.LOC104826852 Tarenaya hassleriana HOM05D005539 ORTHO05D006644 6.0e-285 984.2 810 62.5
Oeu064386.1 Olea europaea HOM05D005539 ORTHO05D006644 5.6e-283 977.6 812 62.4
Cc02_g06620 Coffea canephora HOM05D005539 ORTHO05D006644 7.4e-283 977.2 814 61.9
Sc14g0005370 Simmondsia chinensis HOM05D005539 ORTHO05D006644 1.3e-282 976.5 778 63.6
Aqoxy4G02586 Aquilegia oxysepala HOM05D005539 ORTHO05D006644 1.8e-281 972.6 782 63.3
PSO339G2908 Papaver somniferum HOM05D005539 ORTHO05D006644 4.9e-279 964.5 813 61.4
MSTRG.8325 Avicennia marina HOM05D005539 ORTHO05D006644 6.5e-279 964.1 810 61.7
Dinv17988 Davidia involucrata HOM05D005539 ORTHO05D006644 5.5e-278 961.1 741 66.8
Migut.F01380 Erythranthe guttata HOM05D005539 ORTHO05D006644 1.2e-277 959.9 817 60.8
AT5G05680 Arabidopsis thaliana HOM05D005539 ORTHO05D006644 1.6e-277 959.5 808 61.4
A10p30680 Brassica napus HOM05D005539 ORTHO05D006644 1.6e-277 959.5 812 61.5
AL6G15570 Arabidopsis lyrata HOM05D005539 ORTHO05D006644 4.6e-277 958.0 808 60.9
Carub.0006s0457 Capsella rubella HOM05D005539 ORTHO05D006644 5.1e-276 954.5 811 60.7
Sp6g37210 Schrenkiella parvula HOM05D005539 ORTHO05D006644 5.1e-276 954.5 811 60.9
Thhalv10012715m.g Eutrema salsugineum HOM05D005539 ORTHO05D006644 1.9e-275 952.6 811 60.3
C09p71160 Brassica napus HOM05D005539 ORTHO05D006644 1.6e-274 949.5 812 61.0
PSO384G3240 Papaver somniferum HOM05D005539 ORTHO05D006644 3.7e-274 948.3 817 60.6
BolC9t59878H Brassica oleracea HOM05D005539 ORTHO05D006644 5.9e-272 941.0 838 59.5
CARHR207600 Cardamine hirsuta HOM05D005539 ORTHO05D006644 3.8e-271 938.3 809 60.2
CSS0043358 Camellia sinensis var. sinensis HOM05D005539 ORTHO05D006644 1.6e-266 922.9 818 60.6
vmacro10051 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 1.6e-261 906.4 853 59.1
BcaB05g21701 Brassica carinata HOM05D005539 ORTHO05D006644 3.3e-259 898.7 805 58.3
Aa31LG11G6690 Aethionema arabicum HOM05D005539 ORTHO05D006644 6.3e-258 894.4 806 58.4
Ah.04g164520 Amaranthus hybridus HOM05D005539 ORTHO05D006644 3.4e-256 888.6 822 57.9
Cfa001325 Carpinus fangiana HOM05D005539 ORTHO05D006644 3.8e-255 885.2 613 72.4
Sc14g0005420 Simmondsia chinensis HOM05D005539 ORTHO05D006644 3.2e-254 882.1 729 62.0
FAN06G2075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 2.8e-250 869.0 617 72.3
FAN10G4325 Fragaria x ananassa HOM05D005539 ORTHO05D006644 2.8e-250 869.0 617 72.3
SGA_v2.0_scaffold76G25107 Striga asiatica HOM05D005539 ORTHO05D006644 6.3e-250 867.8 872 53.1
FAN06G5029 Fragaria x ananassa HOM05D005539 ORTHO05D006644 4.4e-243 845.1 620 70.6
Hma1.2p1_0703F.1_g206540 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 2.6e-235 819.3 591 70.2
BcaC06g32273 Brassica carinata HOM05D005539 ORTHO05D006644 2.9e-231 805.8 783 56.3
TPR.G2533 Trifolium pratense HOM05D005539 ORTHO05D006644 3.0e-228 795.8 617 66.8
ATR0193G007 Amborella trichopoda HOM05D005539 ORTHO05D006644 1.1e-214 750.7 717 54.3
BcaC06g32275 Brassica carinata HOM05D005539 ORTHO05D006644 1.2e-211 740.7 622 63.0
Os04g0608400 Oryza sativa ssp. japonica HOM05D005539 ORTHO05D006644 4.4e-203 712.2 763 50.1
HPP92_019887 Vanilla planifolia HOM05D005539 ORTHO05D006644 2.1e-197 693.3 819 46.6
Zm00001eb430560 Zea mays HOM05D005539 ORTHO05D006644 1.1e-193 681.0 716 50.1
unitig_0.g238 Utricularia gibba HOM05D005539 ORTHO05D006644 7.1e-193 678.3 780 49.7
BraA10t45109Z Brassica rapa HOM05D005539 ORTHO05D006644 2.0e-171 607.1 545 60.4
Dinv17987 Davidia involucrata HOM05D005539 ORTHO05D006644 1.0e-162 578.2 403 71.0
Solyc11g020190.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 2.7e-160 570.1 487 62.2
CDE04G1676 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 7.4e-158 562.0 553 52.8
SHI03446 Sapria himalayana HOM05D005539 ORTHO05D006644 2.4e-156 557.0 472 59.7
Dinv17986 Davidia involucrata HOM05D005539 ORTHO05D006644 1.8e-148 530.8 395 70.6
QL08p063092 Quercus lobata HOM05D005539 ORTHO05D006644 1.4e-137 494.6 330 71.8
Mapoly0043s0044 Marchantia polymorpha HOM05D005539 ORTHO05D006644 1.1e-134 485.0 773 39.2
Solyc11g008120.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 5.5e-129 466.1 395 62.3
Nitab4.5_0001171g0020 Nicotiana tabacum HOM05D005539 ORTHO05D006644 4.7e-128 463.0 342 67.8
Nitab4.5_0003886g0070 Nicotiana tabacum HOM05D005539 ORTHO05D006644 8.8e-127 458.8 339 68.1
AagrBONN_evm.TU.Sc2ySwM_362.2924 Anthoceros agrestis HOM05D005539 ORTHO05D006644 4.5e-123 446.4 801 37.3
Pp3c6_24520 Physcomitrium patens HOM05D005539 ORTHO05D006644 7.7e-115 419.1 751 36.5
HanXRQChr13g0392111 Helianthus annuus HOM05D005539 ORTHO05D006644 2.0e-102 377.9 532 44.4
SEGI_35888 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 4.1e-100 370.2 459 44.0
Glyma.18G028233 Glycine max HOM05D005539 ORTHO05D006644 1.6e-88 331.6 275 63.3
Glyma.18G028167 Glycine max HOM05D005539 ORTHO05D006644 4.4e-86 323.6 231 68.0
Nitab4.5_0000395g0010 Nicotiana tabacum HOM05D005539 ORTHO05D006644 6.8e-79 299.7 301 54.5
vmacro22159 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 2.6e-78 297.7 378 49.2
CBR_g22013 Chara braunii HOM05D005539 ORTHO05D006644 1.4e-76 292.0 858 28.2
SEGI_27471 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 6.2e-72 276.6 303 47.9
Solyc11g008110.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 1.1e-71 275.8 183 70.5
FAN06G2580 Fragaria x ananassa HOM05D005539 ORTHO05D006644 7.1e-68 263.1 188 67.6
SEGI_33727 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 1.1e-65 255.8 350 42.9
CDE04G3215 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 4.3e-57 227.3 227 49.8
Solyc11g020180.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 9.0e-55 219.5 144 71.5
MD07G1220900 Malus domestica HOM05D005539 ORTHO05D006644 2.3e-50 204.9 176 62.5
Sabra08G0049700 Salix brachista HOM05D005539 ORTHO05D006644 5.3e-47 193.7 216 57.4
Nitab4.5_0001171g0030 Nicotiana tabacum HOM05D005539 ORTHO05D006644 2.9e-45 188.0 170 59.4
Nitab4.5_0003886g0090 Nicotiana tabacum HOM05D005539 ORTHO05D006644 6.0e-43 180.3 207 50.2
Hma1.2p1_0703F.1_g206520 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 1.1e-41 176.0 158 56.3
HPP92_019878 Vanilla planifolia HOM05D005539 ORTHO05D006644 1.5e-38 165.6 214 44.4
Solyc11g020160.2 Solanum lycopersicum HOM05D005539 ORTHO05D006644 9.4e-36 156.4 147 58.5
SEGI_03850 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 2.3e-34 151.8 210 40.0
MD07G1221200 Malus domestica HOM05D005539 ORTHO05D006644 6.1e-27 127.1 145 51.0
MCO09G726 Micromonas commoda HOM05D005539 ORTHO05D006644 3.3e-25 121.3 791 22.5
SHI03444 Sapria himalayana HOM05D000002 ORTHO05D000001 2.8e-16 91.7 104 44.2
Cre06.g278900 Chlamydomonas reinhardtii HOM05D005539 ORTHO05D006644 3.6e-11 74.7 403 22.6
C03p17190 Brassica napus HOM05D001640 ORTHO05D001612 2.3e-10 72.0 73 52.1
Solyc11g020170.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 4.8e-08 64.3 43 69.8
BolC3t14133H Brassica oleracea HOM05D001640 ORTHO05D001612 1.1e-07 63.2 72 47.2
MD07G1221000 Malus domestica HOM05D005539 ORTHO05D006644 7.0e-07 60.5 36 75.0


User provided reference genes

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