Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G2432 Cannabis sativa HOM05D005984 ORTHO05D007754 1.8e-216 755.7 405 100.0
FAN12G1392 Fragaria x ananassa HOM05D005984 ORTHO05D007754 1.5e-175 619.8 397 84.1
RcHm_v2.0_Chr4g0446671 Rosa chinensis HOM05D005984 ORTHO05D007754 4.4e-175 618.2 411 83.0
Dinv11718 Davidia involucrata HOM05D005984 ORTHO05D007754 7.5e-175 617.5 415 81.7
CsaV3_7G030600 Cucumis sativus L. HOM05D005984 ORTHO05D007754 9.8e-175 617.1 409 79.0
Cpa.g.sc44.38 Carica papaya HOM05D005984 ORTHO05D007754 1.7e-174 616.3 396 79.0
FvH4_4g36890 Fragaria vesca HOM05D005984 ORTHO05D007754 2.2e-174 615.9 398 83.9
Thecc.02G160200 Theobroma cacao HOM05D005984 ORTHO05D007754 4.1e-173 611.7 414 77.1
ClCG09G004540 Citrullus lanatus HOM05D005984 ORTHO05D007754 1.2e-172 610.1 408 78.2
Sed0006813 Sechium edule HOM05D005984 ORTHO05D007754 1.6e-172 609.8 369 83.2
arahy.Tifrunner.gnm1.ann1.B6F48P Arachis hypogaea HOM05D005984 ORTHO05D007754 2.0e-172 609.4 440 72.7
CDE07G0658 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 2.0e-172 609.4 409 80.0
Glyma.11G100800 Glycine max HOM05D005984 ORTHO05D007754 2.7e-172 609.0 406 77.6
arahy.Tifrunner.gnm1.ann1.0C6YUW Arachis hypogaea HOM05D005984 ORTHO05D007754 3.5e-172 608.6 440 73.0
Gorai.005G210500 Gossypium raimondii HOM05D005984 ORTHO05D007754 1.0e-171 607.1 414 78.3
Sed0023953 Sechium edule HOM05D005984 ORTHO05D007754 1.0e-171 607.1 406 82.0
Gohir.D02G187800 Gossypium hirsutum HOM05D005984 ORTHO05D007754 1.7e-171 606.3 414 78.3
Phvul.011G029800 Phaseolus vulgaris HOM05D005984 ORTHO05D007754 2.3e-171 605.9 408 77.0
Prupe.1G347100 Prunus persica HOM05D005984 ORTHO05D007754 2.3e-171 605.9 410 81.2
Atru.chr11.1117 Acer truncatum HOM05D005984 ORTHO05D007754 3.8e-171 605.1 407 81.1
FAN07G1379 Fragaria x ananassa HOM05D005984 ORTHO05D007754 3.8e-171 605.1 422 78.7
Glyma.12G026900 Glycine max HOM05D005984 ORTHO05D007754 5.0e-171 604.7 406 77.3
Gohir.A03G164600 Gossypium hirsutum HOM05D005984 ORTHO05D007754 2.5e-170 602.4 403 77.7
VMungo0647G2306 Vigna mungo HOM05D005984 ORTHO05D007754 2.5e-170 602.4 382 78.0
TAR629G1998 Trochodendron aralioides HOM05D005984 ORTHO05D007754 3.3e-170 602.1 411 74.9
TPR.G32343 Trifolium pratense HOM05D005984 ORTHO05D007754 5.6e-170 601.3 410 76.1
THA.LOC104800911 Tarenaya hassleriana HOM05D005984 ORTHO05D007754 1.2e-169 600.1 420 73.6
MD16G1002000 Malus domestica HOM05D005984 ORTHO05D007754 1.6e-169 599.7 410 81.0
TWI53G1952 Tripterygium wilfordii HOM05D005984 ORTHO05D007754 4.7e-169 598.2 398 76.6
Cfa008738 Carpinus fangiana HOM05D005984 ORTHO05D007754 6.1e-169 597.8 405 75.8
VMungo1127G1047 Vigna mungo HOM05D005984 ORTHO05D007754 6.1e-169 597.8 409 75.6
Ciclev10031672m.g Citrus clementina HOM05D005984 ORTHO05D007754 1.4e-168 596.7 405 78.8
Lj3g0024041 Lotus japonicus HOM05D005984 ORTHO05D007754 1.4e-168 596.7 405 81.0
Lalb_Chr03g0024761 Lupinus albus HOM05D005984 ORTHO05D007754 2.3e-168 595.9 406 80.0
CSS0012805 Camellia sinensis var. sinensis HOM05D005984 ORTHO05D007754 5.2e-168 594.7 394 75.4
ATR0618G114 Amborella trichopoda HOM05D005984 ORTHO05D007754 1.2e-167 593.6 374 79.4
ECA246G1868 Erigeron canadensis HOM05D005984 ORTHO05D007754 1.2e-167 593.6 363 85.4
MD13G1005900 Malus domestica HOM05D005984 ORTHO05D007754 1.5e-167 593.2 412 75.0
Hma1.2p1_0122F.1_g057600 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 2.6e-167 592.4 415 75.4
vmacro08597 Vaccinium macrocarpon HOM05D005984 ORTHO05D007754 4.4e-167 591.7 364 85.2
Thhalv10004338m.g Eutrema salsugineum HOM05D005984 ORTHO05D007754 5.7e-167 591.3 354 81.1
Psat7g177360 Pisum sativum HOM05D005984 ORTHO05D007754 5.7e-167 591.3 405 75.3
Medtr4g075040 Medicago truncatula HOM05D005984 ORTHO05D007754 7.5e-167 590.9 408 75.2
GSVIVG01012045001 Vitis vinifera HOM05D005984 ORTHO05D007754 7.5e-167 590.9 412 74.8
Manes.04G064200 Manihot esculenta HOM05D005984 ORTHO05D007754 9.8e-167 590.5 400 77.8
Sp2g24000 Schrenkiella parvula HOM05D005984 ORTHO05D007754 9.8e-167 590.5 357 86.0
CiPaw.06G060100 Carya illinoinensis HOM05D005984 ORTHO05D007754 1.3e-166 590.1 402 74.9
Actinidia13710 Actinidia chinensis HOM05D005984 ORTHO05D007754 1.7e-166 589.7 415 73.7
Cc11_g02280 Coffea canephora HOM05D005984 ORTHO05D007754 2.2e-166 589.3 414 73.4
C07p44410 Brassica napus HOM05D005984 ORTHO05D007754 2.9e-166 589.0 415 73.7
Actinidia38413 Actinidia chinensis HOM05D005984 ORTHO05D007754 3.7e-166 588.6 410 74.4
AL6G34310 Arabidopsis lyrata HOM05D005984 ORTHO05D007754 3.7e-166 588.6 383 81.7
Duzib052G0297 Durio zibethinus HOM05D005984 ORTHO05D007754 3.7e-166 588.6 418 73.4
PGR044G2022 Punica granatum HOM05D005984 ORTHO05D007754 4.9e-166 588.2 359 79.9
BolC7t44963H Brassica oleracea HOM05D005984 ORTHO05D007754 8.3e-166 587.4 415 73.5
Carub.0006s2091 Capsella rubella HOM05D005984 ORTHO05D007754 1.4e-165 586.6 359 79.7
Manes.11G108100 Manihot esculenta HOM05D005984 ORTHO05D007754 1.4e-165 586.6 384 81.0
Ca_19021_v3 Cicer arietinum L. HOM05D005984 ORTHO05D007754 1.8e-165 586.3 428 72.9
COL.COLO4_19602 Corchorus olitorius HOM05D005984 ORTHO05D007754 2.4e-165 585.9 458 69.0
Sabra07G0060100 Salix brachista HOM05D005984 ORTHO05D007754 2.4e-165 585.9 393 75.6
AUR62017696 Chenopodium quinoa HOM05D005984 ORTHO05D007754 4.1e-165 585.1 354 85.0
A03p46390 Brassica napus HOM05D005984 ORTHO05D007754 7.0e-165 584.3 418 73.0
Potri.007G071300 Populus trichocarpa HOM05D005984 ORTHO05D007754 9.2e-165 583.9 393 75.6
PSO782G0234 Papaver somniferum HOM05D005984 ORTHO05D007754 1.2e-164 583.6 418 72.7
BraA03t13765Z Brassica rapa HOM05D005984 ORTHO05D007754 1.6e-164 583.2 416 72.8
MELO3C023596.2 Cucumis melo HOM05D005984 ORTHO05D007754 2.0e-164 582.8 392 78.8
Zm00001eb271820 Zea mays HOM05D005984 ORTHO05D007754 2.0e-164 582.8 376 76.9
Aa31LG11G2610 Aethionema arabicum HOM05D005984 ORTHO05D007754 2.7e-164 582.4 414 78.3
Aqoxy3G04258 Aquilegia oxysepala HOM05D005984 ORTHO05D007754 7.8e-164 580.9 428 72.7
CAN.G157.24 Capsicum annuum HOM05D005984 ORTHO05D007754 7.8e-164 580.9 394 75.1
PSO063G6567 Papaver somniferum HOM05D005984 ORTHO05D007754 1.3e-163 580.1 419 72.1
DCAR_002576 Daucus carota HOM05D005984 ORTHO05D007754 1.7e-163 579.7 390 76.4
Nn3g18651 Nelumbo nucifera HOM05D005984 ORTHO05D007754 2.3e-163 579.3 390 77.2
CARHR190410 Cardamine hirsuta HOM05D005984 ORTHO05D007754 3.0e-163 578.9 412 76.9
Sopen02g003530 Solanum pennellii HOM05D005984 ORTHO05D007754 6.6e-163 577.8 397 74.6
Eucgr.J00865 Eucalyptus grandis HOM05D005984 ORTHO05D007754 1.1e-162 577.0 361 83.1
Lsat_1_v5_gn_3_35480 Lactuca sativa HOM05D005984 ORTHO05D007754 1.1e-162 577.0 401 78.6
Os06g0729650 Oryza sativa ssp. japonica HOM05D005984 ORTHO05D007754 1.1e-162 577.0 382 76.2
PGSC0003DMG400002324 Solanum tuberosum HOM05D005984 ORTHO05D007754 5.6e-162 574.7 396 73.7
Haze_11755 Corylus avellana HOM05D005984 ORTHO05D007754 7.3e-162 574.3 409 73.1
Oeu026903.3 Olea europaea HOM05D005984 ORTHO05D007754 1.6e-161 573.2 437 73.5
AT5G23120 Arabidopsis thaliana HOM05D005984 ORTHO05D007754 2.1e-161 572.8 418 71.3
HPP92_012878 Vanilla planifolia HOM05D005984 ORTHO05D007754 4.0e-160 568.5 412 71.4
Hund08579 Selenicereus undatus HOM05D005984 ORTHO05D007754 6.8e-160 567.8 383 75.5
Rhsim04G0167300 Rhododendron simsii HOM05D005984 ORTHO05D007754 3.4e-159 565.5 414 72.0
AUR62015232 Chenopodium quinoa HOM05D005984 ORTHO05D007754 5.8e-159 564.7 327 88.1
AUR62015234 Chenopodium quinoa HOM05D005984 ORTHO05D007754 5.8e-159 564.7 327 88.1
MSTRG.431 Avicennia marina HOM05D005984 ORTHO05D007754 1.3e-158 563.5 407 71.7
Lj3A850G95 Lonicera japonica HOM05D005984 ORTHO05D007754 1.3e-158 563.5 422 69.7
EL10Ac9g22946 Beta vulgaris HOM05D005984 ORTHO05D007754 1.1e-157 560.5 436 69.3
SGA_v2.0_scaffold88G27230 Striga asiatica HOM05D005984 ORTHO05D007754 2.0e-156 556.2 373 78.3
unitig_8.g2892 Utricularia gibba HOM05D005984 ORTHO05D007754 1.9e-154 549.7 397 70.8
HanXRQChr17g0544921 Helianthus annuus HOM05D005984 ORTHO05D007754 2.5e-154 549.3 382 79.1
HanXRQChr06g0171511 Helianthus annuus HOM05D005984 ORTHO05D007754 5.6e-154 548.1 379 79.4
Solyc02g014150.4 Solanum lycopersicum HOM05D005984 ORTHO05D007754 1.5e-151 540.0 374 74.3
Migut.E00699 Erythranthe guttata HOM05D005984 ORTHO05D007754 9.9e-151 537.3 414 69.1
QL03p045967 Quercus lobata HOM05D005984 ORTHO05D007754 2.2e-150 536.2 490 59.4
SMO347G0352 Selaginella moellendorffii HOM05D005984 ORTHO05D007754 1.4e-149 533.5 395 70.1
SalBow2G1456 Salvia bowleyana HOM05D005984 ORTHO05D007754 2.4e-149 532.7 451 66.1
Sc10g0006780 Simmondsia chinensis HOM05D005984 ORTHO05D007754 3.2e-149 532.3 332 79.5
Ah.01g001560 Amaranthus hybridus HOM05D005984 ORTHO05D007754 4.3e-146 521.9 412 65.5
CDE04G0799 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 4.3e-146 521.9 409 73.3
Pp3c15_7930 Physcomitrium patens HOM05D005984 ORTHO05D007754 4.3e-146 521.9 349 77.9
Pp3c9_10350 Physcomitrium patens HOM05D005984 ORTHO05D007754 8.1e-145 517.7 357 77.0
Nitab4.5_0000133g0050 Nicotiana tabacum HOM05D005984 ORTHO05D007754 2.0e-143 513.1 544 58.3
Nitab4.5_0006277g0020 Nicotiana tabacum HOM05D005984 ORTHO05D007754 8.7e-139 497.7 574 54.0
Mapoly0020s0149 Marchantia polymorpha HOM05D005984 ORTHO05D007754 2.1e-137 493.0 368 66.3
Peaxi162Scf00363g00317 Petunia axillaris HOM05D005984 ORTHO05D007754 6.4e-134 481.5 495 58.2
FAN17G0887 Fragaria x ananassa HOM05D005984 ORTHO05D007754 1.1e-125 454.1 424 64.9
CBR_g11122 Chara braunii HOM05D005984 ORTHO05D007754 1.6e-116 423.7 400 60.5
AagrBONN_evm.TU.Sc2ySwM_369.365 Anthoceros agrestis HOM05D005984 ORTHO05D007754 4.8e-113 412.1 341 67.2
Dinv01185 Davidia involucrata HOM05D005984 ORTHO05D007754 3.0e-107 392.9 203 90.6
MCO05G498 Micromonas commoda HOM05D005984 ORTHO05D007754 6.7e-107 391.7 411 56.2
Cre06.g273700 Chlamydomonas reinhardtii HOM05D005984 ORTHO05D007754 3.3e-106 389.4 392 58.9
Hma1.2p1_0122F.1_g057590 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 4.8e-97 359.0 209 82.8
PRCOL_00000217 Prasinoderma coloniale HOM05D005984 ORTHO05D007754 9.1e-80 301.6 298 58.1
MD15G1106700 Malus domestica HOM05D005984 ORTHO05D007754 1.2e-58 231.5 114 94.7
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 4.4e-58 229.6 347 42.7
C09p07860 Brassica napus HOM05D005984 ORTHO05D007754 1.3e-49 201.4 181 60.8
SEGI_34707 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 5.2e-43 179.5 122 73.0
MD00G1043400 Malus domestica HOM05D005984 ORTHO05D007754 2.0e-42 177.6 111 77.5
BcaB04g19886 Brassica carinata HOM05D005984 ORTHO05D007754 1.1e-40 171.8 211 49.8
HanXRQChr10g0318441 Helianthus annuus HOM05D005984 ORTHO05D007754 3.0e-30 137.1 69 85.5
AUR62024854 Chenopodium quinoa HOM05D005984 ORTHO05D007754 8.1e-28 129.0 73 87.7
arahy.Tifrunner.gnm1.ann1.25R2K9 Arachis hypogaea HOM05D005984 ORTHO05D014444 6.8e-27 125.9 85 71.8
arahy.Tifrunner.gnm1.ann1.B9R6EW Arachis hypogaea HOM05D005984 ORTHO05D014444 9.9e-26 122.1 84 70.2
SEGI_27749 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 9.0e-19 99.0 53 81.1
C09p07870 Brassica napus HOM05D005984 ORTHO05D042888 4.9e-17 93.2 103 49.5
MBI03_g15323_MAGBIO Magnolia biondii HOM05D002934 ORTHO05D003937 2.1e-15 87.8 43 88.4
Zm00001eb227280 Zea mays HOM05D005984 ORTHO05D007754 5.1e-14 83.2 62 67.7
Glyma.01G000174 Glycine max HOM05D036214 ORTHO05D007754 4.0e-11 73.6 43 79.1
Glyma.06G237300 Glycine max HOM05D005984 ORTHO05D007754 3.4e-10 70.5 70 57.1
BolC9t53702H Brassica oleracea HOM05D005984 ORTHO05D042888 4.5e-10 70.1 61 59.0
Pp3c24_8290 Physcomitrium patens HOM05D013586 ORTHO05D011470 3.8e-09 67.0 38 73.7
AUR62043071 Chenopodium quinoa HOM05D003339 ORTHO05D003847 6.4e-09 66.2 60 53.3
SGA_v2.0_scaffold57G20111 Striga asiatica HOM05D005984 ORTHO05D402503 3.2e-08 63.9 45 64.4


User provided reference genes

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