Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G2350 Cannabis sativa HOM05D004199 ORTHO05D005905 0.0e+00 1654.4 949 100.0
MD13G1046700 Malus domestica HOM05D004199 ORTHO05D005905 0.0e+00 1140.6 893 69.8
MD16G1048400 Malus domestica HOM05D004199 ORTHO05D005905 0.0e+00 1127.5 899 69.9
RcHm_v2.0_Chr4g0435851 Rosa chinensis HOM05D004199 ORTHO05D005905 0.0e+00 1092.4 902 69.2
CsaV3_5G033970 Cucumis sativus L. HOM05D004199 ORTHO05D005905 2.9e-310 1068.5 959 63.5
Sed0023765 Sechium edule HOM05D004199 ORTHO05D005905 3.8e-310 1068.1 897 65.2
MELO3C012214.2 Cucumis melo HOM05D004199 ORTHO05D005905 1.4e-309 1066.2 959 63.2
Cfa018630 Carpinus fangiana HOM05D004199 ORTHO05D005905 4.8e-305 1051.2 896 66.0
FvH4_4g28100 Fragaria vesca HOM05D004199 ORTHO05D005905 1.4e-304 1049.7 900 67.3
FAN07G1167 Fragaria x ananassa HOM05D004199 ORTHO05D005905 5.3e-304 1047.7 904 66.7
ClCG05G023030 Citrullus lanatus HOM05D004199 ORTHO05D005905 9.0e-304 1047.0 880 65.3
FAN12G0509 Fragaria x ananassa HOM05D004199 ORTHO05D005905 4.5e-303 1044.6 900 67.1
FAN22G1977 Fragaria x ananassa HOM05D004199 ORTHO05D005905 1.3e-302 1043.1 898 65.8
FAN17G3109 Fragaria x ananassa HOM05D004199 ORTHO05D005905 4.6e-300 1034.6 860 67.8
CSS0043668 Camellia sinensis var. sinensis HOM05D004199 ORTHO05D005905 1.0e-299 1033.5 908 65.5
CiPaw.16G003100 Carya illinoinensis HOM05D004199 ORTHO05D005905 1.8e-296 1022.7 880 66.2
Prupe.1G305200 Prunus persica HOM05D004199 ORTHO05D005905 6.9e-296 1020.8 959 63.3
Manes.04G160500 Manihot esculenta HOM05D004199 ORTHO05D005905 1.7e-294 1016.1 892 65.8
TAR623G0314 Trochodendron aralioides HOM05D004199 ORTHO05D005905 2.9e-294 1015.4 855 66.1
Eucgr.G02350 Eucalyptus grandis HOM05D004199 ORTHO05D005905 3.8e-294 1015.0 933 62.9
Eucgr.K00868 Eucalyptus grandis HOM05D004199 ORTHO05D005905 4.9e-294 1014.6 974 62.0
Lj6A766T32 Lonicera japonica HOM05D004199 ORTHO05D005905 5.3e-288 994.6 899 64.1
Haze_17439 Corylus avellana HOM05D004199 ORTHO05D005905 1.7e-286 989.6 899 63.4
Hma1.2p1_0399F.1_g144220 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 5.1e-283 978.0 859 65.2
EL10Ac9g22638 Beta vulgaris HOM05D004199 ORTHO05D005905 3.3e-282 975.3 918 60.1
Nn6g35106 Nelumbo nucifera HOM05D004199 ORTHO05D005905 3.3e-282 975.3 869 63.4
Ca_25946_v3 Cicer arietinum L. HOM05D004199 ORTHO05D005905 2.9e-278 962.2 906 63.2
Hma1.2p1_2265F.1_g318400 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 8.5e-278 960.7 863 64.3
MBI01_g12859_MAGBIO Magnolia biondii HOM05D004199 ORTHO05D005905 1.9e-277 959.5 876 62.6
Atru.chr6.1864_Atru.chr6.1865 Acer truncatum HOM05D004199 ORTHO05D005905 4.2e-277 958.4 851 65.0
Dinv05796 Davidia involucrata HOM05D004199 ORTHO05D005905 1.2e-276 956.8 856 64.5
COL.COLO4_31201 Corchorus olitorius HOM05D004199 ORTHO05D005905 1.6e-276 956.4 905 62.8
DCAR_030084 Daucus carota HOM05D004199 ORTHO05D005905 1.0e-275 953.7 887 63.0
Psat2g189000 Pisum sativum HOM05D004199 ORTHO05D005905 1.0e-275 953.7 908 61.9
Gohir.D10G059300 Gossypium hirsutum HOM05D004199 ORTHO05D005905 8.7e-275 950.7 918 61.1
Phvul.001G030200 Phaseolus vulgaris HOM05D004199 ORTHO05D005905 5.7e-274 948.0 905 60.9
VMungo1383G0908 Vigna mungo HOM05D004199 ORTHO05D005905 5.7e-274 948.0 914 60.6
AUR62044199 Chenopodium quinoa HOM05D004199 ORTHO05D005905 7.4e-274 947.6 914 60.5
Gohir.A10G057500 Gossypium hirsutum HOM05D004199 ORTHO05D005905 1.3e-273 946.8 920 61.0
TWI53G1601 Tripterygium wilfordii HOM05D004199 ORTHO05D005905 2.2e-273 946.0 844 63.9
Lj3g0002767 Lotus japonicus HOM05D004199 ORTHO05D005905 2.8e-273 945.7 901 61.0
Gorai.011G063300 Gossypium raimondii HOM05D004199 ORTHO05D005905 8.2e-273 944.1 918 61.1
Glyma.07G227400 Glycine max HOM05D004199 ORTHO05D005905 2.4e-272 942.6 915 61.5
Cc11_g10620 Coffea canephora HOM05D004199 ORTHO05D005905 9.1e-272 940.6 981 60.0
Glyma.20G028100 Glycine max HOM05D004199 ORTHO05D005905 1.5e-271 939.9 905 61.2
Ah.04g153070 Amaranthus hybridus HOM05D004199 ORTHO05D005905 3.4e-271 938.7 900 59.7
Ciclev10014191m.g Citrus clementina HOM05D004199 ORTHO05D005905 1.6e-268 929.9 883 60.0
Potri.008G002600 Populus trichocarpa HOM05D004199 ORTHO05D005905 2.3e-267 926.0 904 59.4
Glyma.07G155300 Glycine max HOM05D004199 ORTHO05D005905 7.4e-266 921.0 907 61.1
EL10Ac8g19592 Beta vulgaris HOM05D004199 ORTHO05D005905 6.3e-265 917.9 965 56.4
vmacro14411 Vaccinium macrocarpon HOM05D004199 ORTHO05D005905 6.3e-265 917.9 914 59.1
Thecc.10G125100 Theobroma cacao HOM05D004199 ORTHO05D005905 4.1e-264 915.2 876 62.9
Sc17g0004690 Simmondsia chinensis HOM05D004199 ORTHO05D005905 2.6e-263 912.5 853 61.8
Lalb_Chr10g0099721 Lupinus albus HOM05D004199 ORTHO05D005905 1.3e-262 910.2 870 61.4
Medtr5g007520 Medicago truncatula HOM05D004199 ORTHO05D005905 1.6e-260 903.3 927 59.0
Rhsim03G0238800 Rhododendron simsii HOM05D004199 ORTHO05D005905 1.1e-258 897.1 948 54.6
Sabra08G0000600 Salix brachista HOM05D004199 ORTHO05D005905 2.6e-258 896.0 922 57.4
arahy.Tifrunner.gnm1.ann1.9AQU5H Arachis hypogaea HOM05D004199 ORTHO05D005905 5.5e-253 878.2 911 59.6
Aqoxy2G01512 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 1.6e-252 876.7 851 58.2
Hma1.2p1_0592F.1_g185323 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 6.1e-252 874.8 797 63.6
Aa31LG3G17980 Aethionema arabicum HOM05D004199 ORTHO05D005905 8.8e-251 870.9 889 56.8
ATR0665G261 Amborella trichopoda HOM05D004199 ORTHO05D005905 9.7e-250 867.5 940 56.6
THA.LOC104800384 Tarenaya hassleriana HOM05D004199 ORTHO05D005905 9.7e-250 867.5 902 56.4
arahy.Tifrunner.gnm1.ann1.P5TZTU Arachis hypogaea HOM05D004199 ORTHO05D005905 3.7e-249 865.5 933 58.2
Sopen05g005660 Solanum pennellii HOM05D004199 ORTHO05D005905 3.7e-249 865.5 902 56.5
PGSC0003DMG400000826 Solanum tuberosum HOM05D004199 ORTHO05D005905 6.3e-249 864.8 900 56.3
TPR.G37944 Trifolium pratense HOM05D004199 ORTHO05D005905 6.3e-249 864.8 795 62.6
Nitab4.5_0004122g0060 Nicotiana tabacum HOM05D004199 ORTHO05D005905 4.5e-247 858.6 965 53.1
SGA_v2.0_scaffold14G06820 Striga asiatica HOM05D004199 ORTHO05D005905 1.0e-246 857.4 909 54.3
ECA234G0057 Erigeron canadensis HOM05D004199 ORTHO05D005905 1.7e-246 856.7 909 56.9
PSO801G0529 Papaver somniferum HOM05D004199 ORTHO05D005905 1.7e-246 856.7 899 57.5
PSO339G4136 Papaver somniferum HOM05D004199 ORTHO05D005905 1.2e-244 850.5 870 59.1
CAN.G184.89 Capsicum annuum HOM05D004199 ORTHO05D005905 2.3e-243 846.3 909 54.6
Peaxi162Scf00102g00927 Petunia axillaris HOM05D004199 ORTHO05D005905 9.8e-242 840.9 892 56.3
Duzib235G0865 Durio zibethinus HOM05D004199 ORTHO05D005905 3.7e-241 839.0 893 59.1
CDE05G0525 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 5.4e-240 835.1 896 55.5
Lalb_Chr04g0254951 Lupinus albus HOM05D004199 ORTHO05D005905 4.5e-239 832.0 917 56.6
Lsat_1_v5_gn_4_1641 Lactuca sativa HOM05D004199 ORTHO05D005905 2.9e-238 829.3 926 55.1
CDE01G0057 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 8.8e-235 817.8 872 56.3
Nitab4.5_0011513g0020 Nicotiana tabacum HOM05D004199 ORTHO05D005905 2.0e-234 816.6 971 51.8
HanXRQChr17g0568011 Helianthus annuus HOM05D004199 ORTHO05D005905 3.4e-234 815.8 830 58.1
CARHR204430 Cardamine hirsuta HOM05D004199 ORTHO05D005905 1.0e-230 804.3 918 53.1
BcaB08g37246 Brassica carinata HOM05D004199 ORTHO05D005905 4.9e-225 785.4 904 51.8
Thhalv10012615m.g Eutrema salsugineum HOM05D004199 ORTHO05D005905 3.2e-224 782.7 885 53.2
HPP92_022758 Vanilla planifolia HOM05D004199 ORTHO05D005905 1.6e-223 780.4 903 52.8
A10p28170 Brassica napus HOM05D004199 ORTHO05D005905 4.6e-223 778.9 918 52.5
BraA10t44866Z Brassica rapa HOM05D004199 ORTHO05D005905 4.6e-223 778.9 918 52.5
BcaB01g05585 Brassica carinata HOM05D004199 ORTHO05D005905 1.5e-221 773.9 874 54.1
BolC9t59585H Brassica oleracea HOM05D004199 ORTHO05D005905 7.3e-221 771.5 917 52.1
A03p03960 Brassica napus HOM05D004199 ORTHO05D005905 9.5e-221 771.2 913 52.2
Migut.E00297 Erythranthe guttata HOM05D004199 ORTHO05D005905 2.1e-220 770.0 849 52.8
SEGI_39962 Sequoiadendron giganteum HOM05D004199 ORTHO05D005905 1.1e-219 767.7 929 51.0
C09p68380 Brassica napus HOM05D004199 ORTHO05D005905 1.4e-219 767.3 917 51.7
BraA03t09739Z Brassica rapa HOM05D004199 ORTHO05D005905 5.8e-218 761.9 914 51.4
unitig_22.g6876 Utricularia gibba HOM05D004199 ORTHO05D005905 2.4e-216 756.5 937 49.9
AL6G19260 Arabidopsis lyrata HOM05D004199 ORTHO05D005905 2.5e-213 746.5 926 50.6
AT5G08550 Arabidopsis thaliana HOM05D004199 ORTHO05D005905 2.3e-211 740.0 923 49.5
C03p04430 Brassica napus HOM05D004199 ORTHO05D005905 1.2e-207 727.6 913 49.9
Carub.0006s0751 Capsella rubella HOM05D004199 ORTHO05D005905 1.7e-206 723.8 929 49.3
Aqoxy6G00799 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 3.3e-205 719.5 849 51.1
BolC3t12974H Brassica oleracea HOM05D004199 ORTHO05D005905 9.5e-205 718.0 913 49.5
Actinidia38395 Actinidia chinensis HOM05D004199 ORTHO05D005905 1.1e-203 714.5 699 58.9
Sp6g34340 Schrenkiella parvula HOM05D004199 ORTHO05D005905 5.4e-200 702.2 895 48.8
Os03g0853700 Oryza sativa ssp. japonica HOM05D004199 ORTHO05D005905 2.3e-198 696.8 959 46.9
Solyc05g009850.4 Solanum lycopersicum HOM05D004199 ORTHO05D005905 1.9e-192 677.2 622 58.0
Zm00001eb064800 Zea mays HOM05D004199 ORTHO05D005905 9.3e-192 674.9 948 46.0
AagrBONN_evm.TU.Sc2ySwM_228.4147 Anthoceros agrestis HOM05D004199 ORTHO05D005905 2.0e-178 630.6 924 45.5
GSVIVG01011956001 Vitis vinifera HOM05D004199 ORTHO05D005905 7.6e-178 628.6 486 66.7
AagrBONN_evm.TU.Sc2ySwM_368.435 Anthoceros agrestis HOM05D004199 ORTHO05D005905 2.4e-171 607.1 924 44.7
Mapoly0131s0026 Marchantia polymorpha HOM05D004199 ORTHO05D005905 4.5e-170 602.8 882 43.5
Pp3c5_20240 Physcomitrium patens HOM05D004199 ORTHO05D005905 5.7e-165 585.9 867 43.7
AUR62042759 Chenopodium quinoa HOM05D004199 ORTHO05D005905 3.4e-162 576.6 483 62.9
Oeu041359.1 Olea europaea HOM05D004199 ORTHO05D005905 7.2e-160 568.9 478 62.3
SMO259G0010 Selaginella moellendorffii HOM05D004199 ORTHO05D005905 2.3e-150 537.3 848 42.0
Rhsim01G0212500 Rhododendron simsii HOM05D004199 ORTHO05D005905 4.5e-130 469.9 552 50.7
CBR_g46838 Chara braunii HOM05D004199 ORTHO05D005905 5.0e-113 413.3 930 34.9
Nitab4.5_0007631g0010 Nicotiana tabacum HOM05D004199 ORTHO05D005905 2.2e-108 397.9 483 49.3
GSVIVG01011955001 Vitis vinifera HOM05D004199 ORTHO05D005905 3.7e-92 344.0 389 57.8
AT5G09210 Arabidopsis thaliana HOM05D004199 ORTHO05D005905 4.9e-92 343.6 341 55.4
Zm00001eb177730 Zea mays HOM05D004199 ORTHO05D005905 8.6e-89 332.8 432 47.0
Zm00001eb381810 Zea mays HOM05D004199 ORTHO05D005905 1.1e-88 332.4 445 46.3
QL01p046262 Quercus lobata HOM05D004199 ORTHO05D005905 3.6e-87 327.4 380 55.3
AUR62033048 Chenopodium quinoa HOM05D004199 ORTHO05D005905 3.4e-85 320.9 431 51.3
Glyma.18G205900 Glycine max HOM05D004199 ORTHO05D005905 4.4e-85 320.5 295 59.0
Oeu041360.1 Olea europaea HOM05D004199 ORTHO05D005905 2.1e-79 301.6 440 49.1
CARHR203800 Cardamine hirsuta HOM05D004199 ORTHO05D005905 6.4e-76 290.0 262 58.4
Zm00001eb323900 Zea mays HOM05D004199 ORTHO05D005905 1.1e-75 289.3 332 48.8
Actinidia13675 Actinidia chinensis HOM05D004199 ORTHO05D005905 4.6e-66 257.3 418 48.1
MCO14G506 Micromonas commoda HOM05D004199 ORTHO05D005905 6.0e-66 256.9 516 33.3
Actinidia13676 Actinidia chinensis HOM05D004199 ORTHO05D005905 7.4e-64 250.0 172 72.7
Cre06.g269350 Chlamydomonas reinhardtii HOM05D004199 ORTHO05D005905 4.0e-62 244.2 1043 26.7
Cpa.g.sc221.8 Carica papaya HOM05D004199 ORTHO05D005905 9.6e-56 223.0 348 48.9
EL10Ac6g14565 Beta vulgaris HOM05D004199 ORTHO05D005905 1.1e-51 209.5 168 62.5
Potri.006G020200 Populus trichocarpa HOM05D004199 ORTHO05D005905 3.4e-37 161.4 151 64.2
Potri.006G020400 Populus trichocarpa HOM05D004199 ORTHO05D005905 1.0e-36 159.8 151 64.2
EL10Ac6g13882 Beta vulgaris HOM05D004199 ORTHO05D005905 2.8e-31 141.7 94 69.1
Nitab4.5_0000520g0050 Nicotiana tabacum HOM05D004199 ORTHO05D005905 3.0e-25 121.7 201 40.8
CARHR069330 Cardamine hirsuta HOM05D004199 ORTHO05D005905 9.7e-24 116.7 88 65.9
Thecc.06G064500 Theobroma cacao HOM05D004199 ORTHO05D005905 9.7e-24 116.7 77 75.3
Cpa.g.sc221.6 Carica papaya HOM05D004199 ORTHO05D005905 3.6e-18 98.2 63 76.2
AagrBONN_evm.TU.Sc2ySwM_368.450 Anthoceros agrestis HOM05D004199 ORTHO05D005905 8.8e-17 93.6 74 55.4
Sabra10G0198200 Salix brachista HOM05D004199 ORTHO05D349944 1.3e-15 89.7 142 43.0
CARHR069340 Cardamine hirsuta HOM05D004199 ORTHO05D005905 4.1e-14 84.7 85 57.6
COL.COLO4_32069 Corchorus olitorius HOM05D004199 ORTHO05D025158 3.5e-13 81.6 90 53.3
COL.COLO4_28252 Corchorus olitorius HOM05D004199 ORTHO05D025158 7.7e-13 80.5 90 55.6
CARHR147400 Cardamine hirsuta HOM05D004199 ORTHO05D005905 3.0e-09 68.6 129 34.1
EL10Ac2g03784 Beta vulgaris HOM05D004199 ORTHO05D019838 1.7e-07 62.8 61 52.5
EL10Ac3g06366 Beta vulgaris HOM05D004199 ORTHO05D019838 1.7e-07 62.8 73 49.3
COL.COLO4_08066 Corchorus olitorius HOM05D004199 ORTHO05D025158 2.8e-07 62.0 151 38.4
TPR.G37907 Trifolium pratense HOM05D004199 ORTHO05D411047 8.3e-07 60.5 57 52.6
EL10Ac7g17540 Beta vulgaris HOM05D000966 ORTHO05D019838 1.1e-06 60.1 60 51.7
AagrBONN_evm.TU.Sc2ySwM_368.453 Anthoceros agrestis HOM05D030179 ORTHO05D026588 1.8e-06 59.3 100 38.0


User provided reference genes

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