Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G0596 Cannabis sativa HOM05D004528 ORTHO05D005815 2.0e-231 805.4 414 100.0
CANSAT56G1313 Cannabis sativa HOM05D004528 ORTHO05D005815 2.0e-231 805.4 414 100.0
Potri.006G221700 Populus trichocarpa HOM05D004528 ORTHO05D005815 8.4e-206 720.3 414 87.4
Prupe.7G211100 Prunus persica HOM05D004528 ORTHO05D005815 8.4e-206 720.3 414 87.4
Manes.16G102700 Manihot esculenta HOM05D004528 ORTHO05D005815 1.9e-205 719.2 414 87.4
MD02G1077700 Malus domestica HOM05D004528 ORTHO05D005815 2.1e-204 715.7 414 87.2
MD15G1206300 Malus domestica HOM05D004528 ORTHO05D005815 2.7e-204 715.3 414 87.0
Ciclev10008462m.g Citrus clementina HOM05D004528 ORTHO05D005815 2.5e-202 708.8 414 86.0
CiPaw.03G217000 Carya illinoinensis HOM05D004528 ORTHO05D005815 4.3e-202 708.0 416 86.3
Thecc.09G090300 Theobroma cacao HOM05D004528 ORTHO05D005815 7.3e-202 707.2 414 86.2
RcHm_v2.0_Chr2g0093221 Rosa chinensis HOM05D004528 ORTHO05D005815 3.6e-201 704.9 414 85.3
QL02p062827 Quercus lobata HOM05D004528 ORTHO05D005815 4.8e-201 704.5 410 86.3
TWI34G0432 Tripterygium wilfordii HOM05D004528 ORTHO05D005815 4.8e-201 704.5 414 84.1
Gorai.010G082500 Gossypium raimondii HOM05D004528 ORTHO05D005815 1.4e-200 703.0 414 85.5
COL.COLO4_18209 Corchorus olitorius HOM05D004528 ORTHO05D005815 2.4e-200 702.2 414 85.3
Duzib150G1454 Durio zibethinus HOM05D004528 ORTHO05D005815 2.4e-200 702.2 409 85.8
GSVIVG01015212001 Vitis vinifera HOM05D004528 ORTHO05D005815 5.3e-200 701.0 414 84.5
Eucgr.C00900 Eucalyptus grandis HOM05D004528 ORTHO05D005815 9.0e-200 700.3 413 85.5
FAN19G1322 Fragaria x ananassa HOM05D004528 ORTHO05D005815 3.4e-199 698.4 414 84.1
FvH4_1g07290 Fragaria vesca HOM05D004528 ORTHO05D005815 4.5e-199 698.0 414 83.8
CSS0033534 Camellia sinensis var. sinensis HOM05D004528 ORTHO05D005815 5.8e-199 697.6 414 84.8
FAN23G0078 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.7e-198 696.0 414 83.8
Dinv36760 Davidia involucrata HOM05D004528 ORTHO05D005815 2.2e-198 695.7 414 84.8
FAN28G2769 Fragaria x ananassa HOM05D004528 ORTHO05D005815 3.8e-198 694.9 414 83.8
ECA240G0155 Erigeron canadensis HOM05D004528 ORTHO05D005815 2.1e-196 689.1 413 83.8
PGR142G0229 Punica granatum HOM05D004528 ORTHO05D005815 7.9e-196 687.2 413 84.0
Haze_25904 Corylus avellana HOM05D004528 ORTHO05D005815 1.3e-195 686.4 411 84.7
Phvul.003G137300 Phaseolus vulgaris HOM05D004528 ORTHO05D005815 1.8e-195 686.0 414 83.1
VMungo1215G0680 Vigna mungo HOM05D004528 ORTHO05D005815 2.3e-195 685.6 414 83.1
Sed0012435 Sechium edule HOM05D004528 ORTHO05D005815 3.0e-195 685.3 414 83.3
vmacro17227 Vaccinium macrocarpon HOM05D004528 ORTHO05D005815 3.0e-195 685.3 445 78.9
Migut.J00603 Erythranthe guttata HOM05D004528 ORTHO05D005815 3.9e-195 684.9 413 83.8
Glyma.17G055500 Glycine max HOM05D004528 ORTHO05D005815 3.9e-195 684.9 414 82.9
BolC7t40641H Brassica oleracea HOM05D004528 ORTHO05D005815 1.9e-194 682.6 414 83.6
MBI01_g09956_MAGBIO Magnolia biondii HOM05D004528 ORTHO05D005815 2.5e-194 682.2 412 82.8
Lalb_Chr13g0299741 Lupinus albus HOM05D004528 ORTHO05D005815 3.3e-194 681.8 414 82.1
C07p02330 Brassica napus HOM05D004528 ORTHO05D005815 4.3e-194 681.4 414 83.6
BcaC06g36598 Brassica carinata HOM05D004528 ORTHO05D005815 7.4e-194 680.6 414 83.1
BraA07t27910Z Brassica rapa HOM05D004528 ORTHO05D005815 7.4e-194 680.6 414 83.1
arahy.Tifrunner.gnm1.ann1.A138U3 Arachis hypogaea HOM05D004528 ORTHO05D005815 9.6e-194 680.2 414 81.6
Glyma.13G103500 Glycine max HOM05D004528 ORTHO05D005815 9.6e-194 680.2 411 83.0
ClCG11G001780 Citrullus lanatus HOM05D004528 ORTHO05D005815 1.6e-193 679.5 414 83.6
A07p01220 Brassica napus HOM05D004528 ORTHO05D005815 3.7e-193 678.3 414 82.9
Lj7A674G30 Lonicera japonica HOM05D004528 ORTHO05D005815 3.7e-193 678.3 409 83.6
arahy.Tifrunner.gnm1.ann1.PT0GJ5 Arachis hypogaea HOM05D004528 ORTHO05D005815 8.1e-193 677.2 414 81.4
Carub.0003s3385 Capsella rubella HOM05D004528 ORTHO05D005815 8.1e-193 677.2 414 82.6
CARHR109990 Cardamine hirsuta HOM05D004528 ORTHO05D005815 8.1e-193 677.2 414 82.6
CsaV3_2G001490 Cucumis sativus L. HOM05D004528 ORTHO05D005815 1.1e-192 676.8 409 83.4
MSTRG.17774 Avicennia marina HOM05D004528 ORTHO05D005815 3.1e-192 675.2 413 82.6
TAR626G1836 Trochodendron aralioides HOM05D004528 ORTHO05D005815 4.0e-192 674.9 414 81.4
AL3G48690 Arabidopsis lyrata HOM05D004528 ORTHO05D005815 1.2e-191 673.3 414 82.4
THA.LOC104820025 Tarenaya hassleriana HOM05D004528 ORTHO05D005815 1.2e-191 673.3 414 82.4
Hma1.2p1_0800F.1_g220090 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 2.0e-191 672.5 412 82.0
Psat3g072560 Pisum sativum HOM05D004528 ORTHO05D005815 7.6e-191 670.6 414 80.2
Thhalv10022707m.g Eutrema salsugineum HOM05D004528 ORTHO05D005815 1.3e-190 669.8 414 82.4
BcaB08g34873 Brassica carinata HOM05D004528 ORTHO05D005815 1.7e-190 669.5 414 82.1
TPR.G3725 Trifolium pratense HOM05D004528 ORTHO05D005815 1.7e-190 669.5 414 80.0
C05p19590 Brassica napus HOM05D004528 ORTHO05D005815 1.1e-189 666.8 426 80.8
BolC5t30662H Brassica oleracea HOM05D004528 ORTHO05D005815 1.1e-189 666.8 426 80.8
Cc06_g11330 Coffea canephora HOM05D004528 ORTHO05D005815 1.4e-189 666.4 411 82.7
Lsat_1_v5_gn_7_37341 Lactuca sativa HOM05D004528 ORTHO05D005815 1.4e-189 666.4 413 81.4
BcaC05g26001 Brassica carinata HOM05D004528 ORTHO05D005815 1.9e-189 666.0 426 80.5
SalBow6G2464 Salvia bowleyana HOM05D004528 ORTHO05D005815 5.5e-189 664.5 413 81.1
AT2G19560 Arabidopsis thaliana HOM05D004528 ORTHO05D005815 9.3e-189 663.7 414 80.7
Aqoxy7G01232 Aquilegia oxysepala HOM05D004528 ORTHO05D005815 7.9e-188 660.6 414 80.0
SGA_v2.0_scaffold62G21604 Striga asiatica HOM05D004528 ORTHO05D005815 1.0e-187 660.2 413 81.1
DCAR_011978 Daucus carota HOM05D004528 ORTHO05D005815 3.0e-187 658.7 415 80.2
Oeu018425.1 Olea europaea HOM05D004528 ORTHO05D005815 5.1e-187 657.9 413 81.1
PGSC0003DMG400013151 Solanum tuberosum HOM05D004528 ORTHO05D005815 1.5e-186 656.4 413 79.9
Aa31LG8G16570 Aethionema arabicum HOM05D004528 ORTHO05D005815 1.9e-186 656.0 414 80.0
Lj4g0008156 Lotus japonicus HOM05D004528 ORTHO05D005815 1.9e-186 656.0 416 79.6
Nitab4.5_0011030g0010 Nicotiana tabacum HOM05D004528 ORTHO05D005815 2.5e-186 655.6 414 79.2
Solyc07g039210.4 Solanum lycopersicum HOM05D004528 ORTHO05D005815 2.5e-186 655.6 413 79.2
CAN.G1208.1 Capsicum annuum HOM05D004528 ORTHO05D005815 7.4e-186 654.1 411 79.1
Sopen07g017560 Solanum pennellii HOM05D004528 ORTHO05D005815 1.3e-185 653.3 413 78.9
Actinidia25256 Actinidia chinensis HOM05D004528 ORTHO05D005815 1.8e-184 649.4 410 80.5
Medtr7g091650 Medicago truncatula HOM05D004528 ORTHO05D005815 3.1e-184 648.7 415 79.3
Nitab4.5_0005634g0070 Nicotiana tabacum HOM05D004528 ORTHO05D005815 3.1e-184 648.7 420 78.3
Sp3g32930 Schrenkiella parvula HOM05D004528 ORTHO05D005815 6.9e-184 647.5 414 80.2
Peaxi162Scf00709g00003 Petunia axillaris HOM05D004528 ORTHO05D005815 1.5e-183 646.4 420 77.6
AUR62033986 Chenopodium quinoa HOM05D004528 ORTHO05D005815 2.9e-182 642.1 411 79.6
EL10Ac8g19227 Beta vulgaris HOM05D004528 ORTHO05D005815 1.2e-180 636.7 438 76.0
unitig_748.g7306 Utricularia gibba HOM05D004528 ORTHO05D005815 1.6e-177 626.3 429 76.0
PSO832G3660 Papaver somniferum HOM05D004528 ORTHO05D005815 3.7e-177 625.2 415 75.9
PSO063G0639 Papaver somniferum HOM05D004528 ORTHO05D005815 1.1e-176 623.6 415 75.9
Nn6g35452 Nelumbo nucifera HOM05D004528 ORTHO05D005815 1.4e-176 623.2 414 77.3
Gohir.A06G072200 Gossypium hirsutum HOM05D004528 ORTHO05D005815 1.8e-176 622.9 375 83.7
BcaB04g16932 Brassica carinata HOM05D004528 ORTHO05D005815 3.1e-176 622.1 416 77.4
Gohir.D06G070800 Gossypium hirsutum HOM05D004528 ORTHO05D005815 3.1e-176 622.1 371 84.4
HPP92_010493 Vanilla planifolia HOM05D004528 ORTHO05D005815 1.4e-173 613.2 415 74.7
SEGI_06455 Sequoiadendron giganteum HOM05D004528 ORTHO05D005815 6.7e-171 604.4 413 70.9
Ca_08460_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 2.5e-170 602.4 406 75.9
MELO3C004622.2 Cucumis melo HOM05D004528 ORTHO05D005815 5.0e-166 588.2 414 73.9
SHI24590 Sapria himalayana HOM05D004528 ORTHO05D005815 5.0e-166 588.2 410 74.6
Cpa.g.sc283.9 Carica papaya HOM05D004528 ORTHO05D005815 1.6e-164 583.2 412 74.5
Os09g0386400 Oryza sativa ssp. japonica HOM05D004528 ORTHO05D005815 1.0e-163 580.5 410 71.2
Sabra06G0171200 Salix brachista HOM05D004528 ORTHO05D005815 2.6e-162 575.9 485 66.4
Sc18g0002070 Simmondsia chinensis HOM05D004528 ORTHO05D005815 9.1e-160 567.4 371 78.4
BcaB04g16933 Brassica carinata HOM05D004528 ORTHO05D005815 3.5e-159 565.5 418 71.3
Mapoly0005s0151 Marchantia polymorpha HOM05D004528 ORTHO05D005815 2.1e-156 556.2 410 67.3
Rhsim05G0022000 Rhododendron simsii HOM05D004528 ORTHO05D005815 3.3e-154 548.9 319 85.9
AUR62027494 Chenopodium quinoa HOM05D004528 ORTHO05D005815 4.7e-148 528.5 411 69.1
Pp3c17_12810 Physcomitrium patens HOM05D004528 ORTHO05D005815 1.8e-144 516.5 398 64.1
SMO117G0048 Selaginella moellendorffii HOM05D004528 ORTHO05D005815 4.5e-143 511.9 405 60.5
AagrBONN_evm.TU.Sc2ySwM_344.906 Anthoceros agrestis HOM05D004528 ORTHO05D005815 1.4e-139 500.4 412 61.4
Atru.chr7.1579 Acer truncatum HOM05D004528 ORTHO05D005815 3.4e-138 495.7 296 82.1
A07p01200 Brassica napus HOM05D004528 ORTHO05D005815 4.4e-138 495.4 303 81.2
FAN26G2732 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.3e-137 493.8 282 86.9
FAN26G1375 Fragaria x ananassa HOM05D004528 ORTHO05D005815 8.3e-137 491.1 282 86.5
Hma1.2p1_0800F.1_g220100 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 2.2e-121 439.9 257 85.6
BcaB03g16691 Brassica carinata HOM05D004528 ORTHO05D005815 1.1e-115 421.0 313 70.3
Zm00001eb311810 Zea mays HOM05D004528 ORTHO05D005815 6.8e-115 418.3 256 80.1
CDE02G2136 Ceratophyllum demersum HOM05D004528 ORTHO05D005815 4.4e-114 415.6 314 68.5
HPP92_010492 Vanilla planifolia HOM05D004528 ORTHO05D005815 6.4e-113 411.8 285 73.0
BcaB03g16690 Brassica carinata HOM05D004528 ORTHO05D005815 2.7e-103 379.8 284 69.7
BcaB03g16744 Brassica carinata HOM05D004528 ORTHO05D005815 4.3e-101 372.5 292 70.2
CBR_g78884 Chara braunii HOM05D004528 ORTHO05D005815 9.9e-98 361.3 415 46.7
Ca_30052_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 1.5e-85 320.9 191 84.8
Oeu018237.1 Olea europaea HOM05D004528 ORTHO05D005815 4.2e-80 302.8 205 74.6
HanXRQChr09g0238111 Helianthus annuus HOM05D004528 ORTHO05D005815 5.5e-80 302.4 184 80.4
CARHR052830 Cardamine hirsuta HOM05D004528 ORTHO05D005815 4.3e-77 292.7 238 63.4
PGSC0003DMG400022053 Solanum tuberosum HOM05D004528 ORTHO05D005815 3.3e-69 266.5 173 78.0
CARHR051760 Cardamine hirsuta HOM05D004528 ORTHO05D005815 8.2e-68 261.9 199 66.3
CARHR054270 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.8e-62 244.2 204 64.7
MCO16G315 Micromonas commoda HOM05D004528 ORTHO05D005815 6.3e-60 235.7 399 36.1
MD15G1352000 Malus domestica HOM05D004528 ORTHO05D005815 5.3e-59 232.6 220 57.3
Cre02.g110400 Chlamydomonas reinhardtii HOM05D004528 ORTHO05D005815 2.9e-57 226.9 400 34.2
ATR0026G021 Amborella trichopoda HOM05D004528 ORTHO05D005815 6.1e-55 219.2 131 83.2
PRCOL_00001383 Prasinoderma coloniale HOM05D004528 ORTHO05D005815 1.8e-54 217.6 318 36.5
CARHR052790 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.4e-50 203.4 199 61.8
CARHR122310 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.0e-49 201.8 126 78.6
arahy.Tifrunner.gnm1.ann1.43843R Arachis hypogaea HOM05D004528 ORTHO05D005815 3.8e-49 199.9 121 75.2
CARHR051750 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.5e-45 188.0 161 66.5
CARHR122320 Cardamine hirsuta HOM05D004528 ORTHO05D005815 7.4e-45 185.7 177 60.5
arahy.Tifrunner.gnm1.ann1.VVLB7Q Arachis hypogaea HOM05D004528 ORTHO05D005815 4.5e-42 176.4 102 78.4
Ah.14g085220 Amaranthus hybridus HOM05D004528 ORTHO05D005815 1.4e-38 164.9 414 31.9
Sp2g03965 Schrenkiella parvula HOM05D004528 ORTHO05D005815 1.4e-38 164.9 114 72.8
arahy.Tifrunner.gnm1.ann1.DFU5EN Arachis hypogaea HOM05D004528 ORTHO05D005815 1.2e-34 151.8 83 83.1
ATR0026G011 Amborella trichopoda HOM05D004528 ORTHO05D005815 1.7e-33 147.9 107 64.5
ATR0026G010 Amborella trichopoda HOM05D004528 ORTHO05D005815 1.8e-30 137.9 80 83.8
RcHm_v2.0_Chr7g0206721 Rosa chinensis HOM05D004528 ORTHO05D005815 6.5e-25 119.4 117 59.0
Sopen12g027230 Solanum pennellii HOM05D004528 ORTHO05D051045 2.7e-18 97.4 153 39.2
FAN23G1719 Fragaria x ananassa HOM05D004528 ORTHO05D005815 7.8e-18 95.9 51 90.2
BcaC03g15601 Brassica carinata HOM05D004528 ORTHO05D032255 5.0e-17 93.2 127 52.0
BolC2t09319H Brassica oleracea HOM05D004528 ORTHO05D032255 6.6e-17 92.8 143 46.2
RcHm_v2.0_Chr7g0207111 Rosa chinensis HOM05D004528 ORTHO05D005815 3.3e-16 90.5 101 53.5
C02p33900 Brassica napus HOM05D004528 ORTHO05D032255 6.1e-15 86.3 146 44.5
RcHm_v2.0_Chr7g0207281 Rosa chinensis HOM05D004528 ORTHO05D005815 3.4e-13 80.5 54 81.5
CARHR054280 Cardamine hirsuta HOM05D004528 ORTHO05D005815 7.5e-13 79.3 71 64.8
CARHR054260 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.3e-12 78.6 50 78.0
arahy.Tifrunner.gnm1.ann1.1S90RN Arachis hypogaea HOM05D004528 ORTHO05D005815 2.7e-10 70.9 57 63.2
arahy.Tifrunner.gnm1.ann1.UXE40S Arachis hypogaea HOM05D004528 ORTHO05D005815 8.6e-09 65.9 81 45.7
RcHm_v2.0_Chr7g0230831 Rosa chinensis HOM05D004528 ORTHO05D005815 2.5e-08 64.3 38 81.6


User provided reference genes

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