Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G2052 Cannabis sativa HOM05D005396 ORTHO05D006400 1.3e-161 573.2 313 100.0
Prupe.6G153500 Prunus persica HOM05D005396 ORTHO05D006400 2.7e-108 396.0 272 71.3
Cfa013848 Carpinus fangiana HOM05D005396 ORTHO05D006400 1.0e-107 394.0 274 68.2
QL93p0267_0015 Quercus lobata HOM05D005396 ORTHO05D006400 2.0e-106 389.8 272 68.4
MD11G1180700 Malus domestica HOM05D005396 ORTHO05D006400 3.1e-104 382.5 270 70.4
RcHm_v2.0_Chr5g0056531 Rosa chinensis HOM05D005396 ORTHO05D006400 2.7e-103 379.4 272 69.1
Actinidia06861 Actinidia chinensis HOM05D005396 ORTHO05D006400 5.9e-103 378.3 263 68.1
TAR623G1186 Trochodendron aralioides HOM05D005396 ORTHO05D006400 1.3e-102 377.1 272 65.1
Hund20984 Selenicereus undatus HOM05D005396 ORTHO05D006400 1.1e-101 374.0 278 65.1
Rhsim13G0228100 Rhododendron simsii HOM05D005396 ORTHO05D006400 2.5e-101 372.9 263 67.3
GSVIVG01037451001 Vitis vinifera HOM05D005396 ORTHO05D006400 2.1e-100 369.8 267 66.3
RhsimUnG0154800 Rhododendron simsii HOM05D005396 ORTHO05D006400 6.1e-100 368.2 263 66.9
FvH4_3g30540 Fragaria vesca HOM05D005396 ORTHO05D006400 1.0e-99 367.5 271 67.5
FAN11G0079 Fragaria x ananassa HOM05D005396 ORTHO05D006400 1.0e-99 367.5 271 67.5
FAN25G1745 Fragaria x ananassa HOM05D005396 ORTHO05D006400 1.8e-99 366.7 271 67.5
Aqoxy5G02307 Aquilegia oxysepala HOM05D005396 ORTHO05D006400 2.3e-99 366.3 263 65.4
Nn4g25074 Nelumbo nucifera HOM05D005396 ORTHO05D006400 3.0e-99 365.9 274 63.9
Hma1.2p1_0143F.1_g064480 Hydrangea macrophylla HOM05D005396 ORTHO05D006400 2.0e-98 363.2 275 65.1
FAN16G3367 Fragaria x ananassa HOM05D005396 ORTHO05D006400 5.7e-98 361.7 271 66.4
HanXRQChr01g0021191 Helianthus annuus HOM05D005396 ORTHO05D006400 5.7e-98 361.7 273 64.1
TWI31G0083 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 1.3e-97 360.5 269 63.6
ECA248G0004 Erigeron canadensis HOM05D005396 ORTHO05D006400 3.7e-97 359.0 260 65.4
Sc12g0000550 Simmondsia chinensis HOM05D005396 ORTHO05D006400 1.1e-96 357.5 272 62.1
Atru.chr3.1131 Acer truncatum HOM05D005396 ORTHO05D006400 4.1e-96 355.5 272 64.0
Atru.chr3.1122 Acer truncatum HOM05D005396 ORTHO05D006400 9.1e-96 354.4 272 63.6
Oeu058539.1 Olea europaea HOM05D005396 ORTHO05D006400 9.1e-96 354.4 271 60.9
Solyc01g006210.4 Solanum lycopersicum HOM05D005396 ORTHO05D006400 9.1e-96 354.4 271 63.1
MSTRG.17554 Avicennia marina HOM05D005396 ORTHO05D006400 1.2e-95 354.0 265 64.5
TWI79G1618 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 1.6e-95 353.6 269 62.8
Thecc.09G337500 Theobroma cacao HOM05D005396 ORTHO05D006400 4.5e-95 352.1 272 61.8
Migut.N02270 Erythranthe guttata HOM05D005396 ORTHO05D006400 5.9e-95 351.7 277 62.1
Sopen01g002210 Solanum pennellii HOM05D005396 ORTHO05D006400 5.9e-95 351.7 273 63.0
PGSC0003DMG400032195 Solanum tuberosum HOM05D005396 ORTHO05D006400 8.6e-94 347.8 272 62.1
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 2.5e-93 346.3 274 60.9
PGR119G0906 Punica granatum HOM05D005396 ORTHO05D006400 2.5e-93 346.3 260 63.1
ClCG02G024200 Citrullus lanatus HOM05D005396 ORTHO05D006400 4.2e-93 345.5 271 61.6
Eucgr.J00626 Eucalyptus grandis HOM05D005396 ORTHO05D006400 4.2e-93 345.5 272 59.2
vmacro04253 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 4.2e-93 345.5 321 54.8
CAN.G140.42 Capsicum annuum HOM05D005396 ORTHO05D006400 5.5e-93 345.1 273 61.2
Dinv09746 Davidia involucrata HOM05D005396 ORTHO05D006400 5.5e-93 345.1 237 70.0
Gorai.003G140300 Gossypium raimondii HOM05D005396 ORTHO05D006400 7.2e-93 344.7 271 60.5
MBI13_g02393_MAGBIO Magnolia biondii HOM05D005396 ORTHO05D006400 9.5e-93 344.4 258 64.0
Cpa.g.sc103.64 Carica papaya HOM05D005396 ORTHO05D006400 1.6e-92 343.6 272 60.7
Ciclev10017900m.g Citrus clementina HOM05D005396 ORTHO05D006400 1.6e-92 343.6 273 60.8
Nitab4.5_0001568g0090 Nicotiana tabacum HOM05D005396 ORTHO05D006400 2.1e-92 343.2 273 61.2
Gohir.A03G035066 Gossypium hirsutum HOM05D005396 ORTHO05D006400 4.7e-92 342.0 271 59.8
Gohir.D03G133200 Gossypium hirsutum HOM05D005396 ORTHO05D006400 6.1e-92 341.7 271 60.1
SGA_v2.0_scaffold3G01566 Striga asiatica HOM05D005396 ORTHO05D006400 6.1e-92 341.7 249 63.5
MELO3C014703.2 Cucumis melo HOM05D005396 ORTHO05D006400 8.0e-92 341.3 271 60.9
Sed0007754 Sechium edule HOM05D005396 ORTHO05D006400 1.8e-91 340.1 259 62.5
AUR62001615 Chenopodium quinoa HOM05D005396 ORTHO05D006400 2.3e-91 339.7 274 59.1
SalBow2G1218 Salvia bowleyana HOM05D005396 ORTHO05D006400 2.3e-91 339.7 280 60.4
Manes.04G053800 Manihot esculenta HOM05D005396 ORTHO05D006400 3.0e-91 339.3 272 58.5
Peaxi162Scf00441g00618 Petunia axillaris HOM05D005396 ORTHO05D006400 1.5e-90 337.0 273 60.8
Carub.0006s1945 Capsella rubella HOM05D005396 ORTHO05D006400 2.0e-90 336.7 274 60.6
Ah.15g099430 Amaranthus hybridus HOM05D005396 ORTHO05D006400 3.4e-90 335.9 260 61.9
Lsat_1_v5_gn_1_68341 Lactuca sativa HOM05D005396 ORTHO05D006400 4.4e-90 335.5 262 61.1
CARHR191730 Cardamine hirsuta HOM05D005396 ORTHO05D006400 7.5e-90 334.7 259 63.7
Lj6g0008952 Lotus japonicus HOM05D005396 ORTHO05D006400 9.8e-90 334.3 264 61.0
CDE02G2011 Ceratophyllum demersum HOM05D005396 ORTHO05D006400 1.3e-89 334.0 274 56.6
Haze_22522 Corylus avellana HOM05D005396 ORTHO05D006400 1.7e-89 333.6 274 61.7
Sp6g23380 Schrenkiella parvula HOM05D005396 ORTHO05D006400 3.7e-89 332.4 277 59.9
Aa31LG1G13640 Aethionema arabicum HOM05D005396 ORTHO05D006400 4.9e-89 332.0 272 59.6
BcaB05g22770 Brassica carinata HOM05D005396 ORTHO05D006400 6.3e-89 331.6 267 61.8
DCAR_024368 Daucus carota HOM05D005396 ORTHO05D006400 1.1e-88 330.9 275 59.6
Thhalv10013965m.g Eutrema salsugineum HOM05D005396 ORTHO05D006400 1.4e-88 330.5 258 62.4
Glyma.20G050900 Glycine max HOM05D005396 ORTHO05D006400 1.8e-88 330.1 275 60.0
CsaV3_4G017330 Cucumis sativus L. HOM05D005396 ORTHO05D006400 2.4e-88 329.7 285 57.5
Phvul.L001837 Phaseolus vulgaris HOM05D005396 ORTHO05D006400 4.1e-88 328.9 273 61.5
AL6G32750 Arabidopsis lyrata HOM05D005396 ORTHO05D006400 7.0e-88 328.2 259 61.8
Zm00001eb405340 Zea mays HOM05D005396 ORTHO05D006400 9.2e-88 327.8 274 56.9
A10p18950 Brassica napus HOM05D005396 ORTHO05D006400 1.2e-87 327.4 278 58.6
BraA10t43972Z Brassica rapa HOM05D005396 ORTHO05D006400 1.2e-87 327.4 278 58.6
BcaC04g19522 Brassica carinata HOM05D005396 ORTHO05D006400 1.6e-87 327.0 277 58.8
Potri.004G195600 Populus trichocarpa HOM05D005396 ORTHO05D006400 2.0e-87 326.6 272 57.7
BolC2t07100H Brassica oleracea HOM05D005396 ORTHO05D006400 3.5e-87 325.9 259 62.2
BolC9t58356H Brassica oleracea HOM05D005396 ORTHO05D006400 3.5e-87 325.9 258 61.2
BcaC03g13834 Brassica carinata HOM05D005396 ORTHO05D006400 4.5e-87 325.5 259 62.2
C09p54930 Brassica napus HOM05D005396 ORTHO05D006400 4.5e-87 325.5 258 60.9
BNapus_Darmor_BZH_scaffold_38p01120 Brassica napus HOM05D005396 ORTHO05D006400 1.3e-86 323.9 280 58.6
BraA02t05619Z Brassica rapa HOM05D005396 ORTHO05D006400 1.3e-86 323.9 280 58.6
Lalb_Chr19g0127081 Lupinus albus HOM05D005396 ORTHO05D006400 1.3e-86 323.9 261 60.2
BcaB08g36475 Brassica carinata HOM05D005396 ORTHO05D006400 2.9e-86 322.8 258 60.9
Ca_16226_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 2.9e-86 322.8 274 57.7
Ca_30133_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 2.9e-86 322.8 274 57.7
Cc01_g01860 Coffea canephora HOM05D005396 ORTHO05D006400 2.9e-86 322.8 276 60.5
Medtr3g078850 Medicago truncatula HOM05D005396 ORTHO05D006400 2.9e-86 322.8 272 59.6
AT5G21140 Arabidopsis thaliana HOM05D005396 ORTHO05D006400 3.8e-86 322.4 259 61.0
arahy.Tifrunner.gnm1.ann1.MJD0TM Arachis hypogaea HOM05D005396 ORTHO05D006400 3.8e-86 322.4 262 58.4
VMungo0540G2152 Vigna mungo HOM05D005396 ORTHO05D006400 3.8e-86 322.4 272 58.5
ATR0307G059 Amborella trichopoda HOM05D005396 ORTHO05D006400 6.6e-86 321.6 260 60.8
THA.LOC104799054 Tarenaya hassleriana HOM05D005396 ORTHO05D006400 6.6e-86 321.6 276 56.5
HPP92_018982 Vanilla planifolia HOM05D005396 ORTHO05D006400 1.9e-85 320.1 263 59.7
TPR.G28402 Trifolium pratense HOM05D005396 ORTHO05D006400 7.3e-85 318.2 280 57.9
EL10Ac7g16216 Beta vulgaris HOM05D005396 ORTHO05D006400 3.6e-84 315.8 320 51.9
Dinv36333 Davidia involucrata HOM05D005396 ORTHO05D006400 3.6e-84 315.8 211 70.6
Os11g0130300 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 8.0e-84 314.7 279 55.6
Duzib170G1145 Durio zibethinus HOM05D005396 ORTHO05D006400 6.8e-83 311.6 269 57.2
Os12g0127100 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 1.5e-82 310.5 277 55.2
PSO384G1109 Papaver somniferum HOM05D005396 ORTHO05D006400 3.4e-82 309.3 263 57.4
Sabra04G0132800 Salix brachista HOM05D005396 ORTHO05D006400 1.4e-80 303.9 319 48.6
arahy.Tifrunner.gnm1.ann1.MU94NL Arachis hypogaea HOM05D005396 ORTHO05D006400 2.3e-78 296.6 239 58.2
Nitab4.5_0005132g0020 Nicotiana tabacum HOM05D005396 ORTHO05D006400 1.5e-77 293.9 230 62.6
PSO339G5547 Papaver somniferum HOM05D005396 ORTHO05D006400 1.5e-77 293.9 233 59.2
FAN21G3982 Fragaria x ananassa HOM05D005396 ORTHO05D006400 2.5e-77 293.1 210 68.6
Lj2A553G20 Lonicera japonica HOM05D005396 ORTHO05D006400 4.3e-77 292.4 214 65.0
EL10Ac7g16212 Beta vulgaris HOM05D005396 ORTHO05D006400 6.4e-73 278.5 280 52.5
EL10Ac1g01677 Beta vulgaris HOM05D005396 ORTHO05D006400 8.3e-73 278.1 279 52.3
Psat0s646g0040 Pisum sativum HOM05D005396 ORTHO05D006400 1.1e-67 261.2 237 56.1
CiPaw.07G159800 Carya illinoinensis HOM05D005396 ORTHO05D006400 1.4e-59 234.2 179 63.1
Pp3c20_10070 Physcomitrium patens HOM05D005396 ORTHO05D006400 4.0e-59 232.6 247 44.9
AUR62020162 Chenopodium quinoa HOM05D005396 ORTHO05D006400 6.4e-57 225.3 260 47.7
SEGI_19301 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 2.4e-56 223.4 209 53.1
BcaC03g13835 Brassica carinata HOM05D005396 ORTHO05D006400 1.5e-53 214.2 235 50.2
BolC2t07101H Brassica oleracea HOM05D005396 ORTHO05D006400 1.5e-53 214.2 235 50.2
SMO239G0090 Selaginella moellendorffii HOM05D005396 ORTHO05D006400 1.6e-52 210.7 229 46.7
BraA02t05620Z Brassica rapa HOM05D005396 ORTHO05D006400 4.7e-52 209.1 236 48.3
SHI25366 Sapria himalayana HOM05D005396 ORTHO05D000023 3.8e-49 199.5 355 32.7
BNapus_Darmor_BZH_scaffold_38p01110 Brassica napus HOM05D005396 ORTHO05D006400 1.4e-48 197.6 239 46.9
unitig_60.g25792 Utricularia gibba HOM05D005396 ORTHO05D006400 1.4e-48 197.6 254 42.1
EL10Ac7g16203 Beta vulgaris HOM05D005396 ORTHO05D006400 4.6e-47 192.6 203 52.2
CSS0010626 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 1.8e-43 180.6 133 64.7
AagrBONN_evm.TU.Sc2ySwM_368.35 Anthoceros agrestis HOM05D005396 ORTHO05D006400 6.9e-43 178.7 198 43.9
EL10Ac7g16205 Beta vulgaris HOM05D005396 ORTHO05D006400 1.4e-40 171.0 240 43.3
CBR_g4478 Chara braunii HOM05D005396 ORTHO05D000048 5.4e-40 169.1 218 37.6
Zm00001eb199750 Zea mays HOM05D005396 ORTHO05D006400 3.9e-38 162.9 202 46.0
vmacro22428 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 5.1e-38 162.5 165 52.7
EL10Ac7g16214 Beta vulgaris HOM05D005396 ORTHO05D006400 1.2e-34 151.4 209 42.1
EL10Ac7g16209 Beta vulgaris HOM05D005396 ORTHO05D006400 2.0e-34 150.6 195 46.2
RcHm_v2.0_Chr5g0056151 Rosa chinensis HOM05D005396 ORTHO05D006400 2.6e-34 150.2 117 61.5
DCAR_024367 Daucus carota HOM05D005396 ORTHO05D006400 1.0e-33 148.3 273 37.0
RcHm_v2.0_Chr6g0256561 Rosa chinensis HOM05D005396 ORTHO05D006400 1.3e-33 147.9 110 63.6
CSS0025534 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 9.3e-32 141.7 93 71.0
Psat5g030400 Pisum sativum HOM05D001137 ORTHO05D006400 2.8e-28 130.2 159 42.1
Mapoly0185s0017 Marchantia polymorpha HOM05D005396 ORTHO05D006400 1.8e-27 127.5 267 33.7
MCO07G491 Micromonas commoda HOM05D005396 ORTHO05D006400 2.2e-20 104.0 195 30.8
PRCOL_00005415 Prasinoderma coloniale HOM05D005396 ORTHO05D006400 1.7e-17 94.4 185 31.4
HanXRQChr08g0223711 Helianthus annuus HOM05D005396 ORTHO05D006400 2.4e-11 73.9 45 66.7
Actinidia16276 Actinidia chinensis HOM05D005396 ORTHO05D006400 5.3e-11 72.8 52 65.4
SEGI_06155 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 9.4e-08 62.0 40 60.0


User provided reference genes

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