Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G0922 Cannabis sativa HOM05D005824 ORTHO05D007029 3.1e-128 461.8 240 100.0
CANSAT54G1845 Cannabis sativa HOM05D005824 ORTHO05D007029 2.4e-120 435.6 238 95.4
GSVIVG01031305001 Vitis vinifera HOM05D005824 ORTHO05D007029 2.2e-33 146.7 237 41.8
Ciclev10011677m.g Citrus clementina HOM05D005824 ORTHO05D007029 3.5e-31 139.4 170 47.6
QL07p026733 Quercus lobata HOM05D005824 ORTHO05D007029 3.5e-31 139.4 241 41.1
Cfa020078 Carpinus fangiana HOM05D005824 ORTHO05D007029 1.0e-30 137.9 170 46.5
Thecc.09G352900 Theobroma cacao HOM05D005824 ORTHO05D007029 1.3e-30 137.5 242 38.8
CiPaw.10G020000 Carya illinoinensis HOM05D005824 ORTHO05D007029 3.9e-30 136.0 243 39.5
Hma1.2p1_1243F.1_g269980 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 3.3e-29 132.9 242 38.4
MBI19_g32704_MAGBIO Magnolia biondii HOM05D005824 ORTHO05D007029 9.7e-29 131.3 221 41.2
Sabra15G0009000 Salix brachista HOM05D005824 ORTHO05D007029 9.7e-29 131.3 237 37.1
Gohir.A03G155800 Gossypium hirsutum HOM05D005824 ORTHO05D007029 1.3e-28 131.0 248 37.1
RcHm_v2.0_Chr3g0458051 Rosa chinensis HOM05D005824 ORTHO05D007029 1.3e-28 131.0 242 38.4
Cpa.g.sc48.209 Carica papaya HOM05D005824 ORTHO05D007029 1.6e-28 130.6 187 44.4
Gorai.005G200700 Gossypium raimondii HOM05D005824 ORTHO05D007029 2.2e-28 130.2 246 37.4
Lalb_Chr02g0154321 Lupinus albus HOM05D005824 ORTHO05D007029 2.2e-28 130.2 266 36.1
Glyma.10G084300 Glycine max HOM05D005824 ORTHO05D007029 2.8e-28 129.8 199 41.2
CSS0029355 Camellia sinensis var. sinensis HOM05D005824 ORTHO05D007029 4.8e-28 129.0 244 38.1
arahy.Tifrunner.gnm1.ann1.E5V6X9 Arachis hypogaea HOM05D005824 ORTHO05D007029 1.1e-27 127.9 188 42.6
arahy.Tifrunner.gnm1.ann1.S86EGP Arachis hypogaea HOM05D005824 ORTHO05D007029 1.4e-27 127.5 188 42.0
Atru.chr12.1601 Acer truncatum HOM05D005824 ORTHO05D007029 2.4e-27 126.7 239 37.2
Glyma.02G192500 Glycine max HOM05D005824 ORTHO05D007029 3.1e-27 126.3 254 37.8
TAR362G0448 Trochodendron aralioides HOM05D005824 ORTHO05D007029 5.3e-27 125.6 216 38.4
FAN14G3202 Fragaria x ananassa HOM05D005824 ORTHO05D007029 9.0e-27 124.8 232 37.9
Lj5g0026124 Lotus japonicus HOM05D005824 ORTHO05D007029 9.0e-27 124.8 204 38.7
Prupe.6G306900 Prunus persica HOM05D005824 ORTHO05D007029 1.5e-26 124.0 241 39.4
FvH4_6g08180 Fragaria vesca HOM05D005824 ORTHO05D007029 2.6e-26 123.2 232 37.9
PGR083G1123 Punica granatum HOM05D005824 ORTHO05D007029 3.4e-26 122.9 244 37.3
Manes.06G027100 Manihot esculenta HOM05D005824 ORTHO05D007029 5.9e-26 122.1 238 40.3
Medtr1g055080 Medicago truncatula HOM05D005824 ORTHO05D007029 7.6e-26 121.7 255 35.3
TPR.G12910 Trifolium pratense HOM05D005824 ORTHO05D007029 1.0e-25 121.3 265 36.6
Potri.015G010900 Populus trichocarpa HOM05D005824 ORTHO05D007029 1.3e-25 120.9 238 34.5
VMungo0720G2244 Vigna mungo HOM05D005824 ORTHO05D007029 1.3e-25 120.9 253 36.4
FAN05G5613 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.7e-25 120.6 243 37.0
MELO3C017799.2 Cucumis melo HOM05D005824 ORTHO05D007029 6.5e-25 118.6 231 37.2
PSO017G5895 Papaver somniferum HOM05D005824 ORTHO05D007029 8.5e-25 118.2 213 41.3
PSO063G2449 Papaver somniferum HOM05D005824 ORTHO05D007029 1.1e-24 117.9 212 41.5
Aqoxy2G02580 Aquilegia oxysepala HOM05D005824 ORTHO05D007029 1.9e-24 117.1 253 36.4
CsaV3_4G002430 Cucumis sativus L. HOM05D005824 ORTHO05D007029 2.5e-24 116.7 231 36.8
FAN09G3961 Fragaria x ananassa HOM05D005824 ORTHO05D007029 2.5e-24 116.7 231 36.8
Ca_11665_v3 Cicer arietinum L. HOM05D005824 ORTHO05D007029 4.2e-24 115.9 207 38.6
Lj3g0001001 Lotus japonicus HOM05D005824 ORTHO05D007029 4.2e-24 115.9 240 36.7
ClCG07G011770 Citrullus lanatus HOM05D005824 ORTHO05D007029 5.5e-24 115.5 238 38.2
TPR.G21237 Trifolium pratense HOM05D005824 ORTHO05D007029 7.2e-24 115.2 264 35.2
Haze_20113 Corylus avellana HOM05D005824 ORTHO05D007029 9.3e-24 114.8 186 37.1
vmacro01596 Vaccinium macrocarpon HOM05D005824 ORTHO05D007029 1.6e-23 114.0 156 44.9
MD12G1202100 Malus domestica HOM05D005824 ORTHO05D007029 2.7e-23 113.2 239 37.7
Rhsim11G0099700 Rhododendron simsii HOM05D005824 ORTHO05D007029 2.7e-23 113.2 205 39.0
COL.COLO4_11087 Corchorus olitorius HOM05D005824 ORTHO05D007029 3.6e-23 112.8 208 37.5
Duzib150G0567 Durio zibethinus HOM05D005824 ORTHO05D007029 7.9e-23 111.7 242 36.4
THA.LOC104821746 Tarenaya hassleriana HOM05D005824 ORTHO05D007029 7.9e-23 111.7 214 37.9
PSO384G0570 Papaver somniferum HOM05D005824 ORTHO05D007029 1.0e-22 111.3 213 37.6
Cc02_g35570 Coffea canephora HOM05D005824 ORTHO05D007029 1.8e-22 110.5 216 36.1
Lj5A322T66 Lonicera japonica HOM05D005824 ORTHO05D007029 2.3e-22 110.2 207 35.7
Sc09g0002470 Simmondsia chinensis HOM05D005824 ORTHO05D007029 2.3e-22 110.2 229 35.8
MD04G1189300 Malus domestica HOM05D005824 ORTHO05D007029 3.9e-22 109.4 240 36.7
PSO339G3868 Papaver somniferum HOM05D005824 ORTHO05D007029 3.9e-22 109.4 213 37.6
Psat6g118640 Pisum sativum HOM05D005824 ORTHO05D007029 3.9e-22 109.4 281 34.2
Ah.10g027060 Amaranthus hybridus HOM05D005824 ORTHO05D007029 5.1e-22 109.0 227 37.4
Sed0007659 Sechium edule HOM05D005824 ORTHO05D007029 1.5e-21 107.5 239 33.9
Gohir.A08G201701 Gossypium hirsutum HOM05D005824 ORTHO05D007029 1.9e-21 107.1 209 35.9
SalBow7G3942 Salvia bowleyana HOM05D005824 ORTHO05D007029 1.9e-21 107.1 182 35.7
MSTRG.15631 Avicennia marina HOM05D005824 ORTHO05D007029 2.5e-21 106.7 207 37.7
Hund21844 Selenicereus undatus HOM05D005824 ORTHO05D007029 2.5e-21 106.7 162 40.7
Migut.B00860 Erythranthe guttata HOM05D005824 ORTHO05D007029 4.3e-21 105.9 156 41.7
Dinv24497 Davidia involucrata HOM05D005824 ORTHO05D007029 5.7e-21 105.5 217 35.9
Oeu061927.1 Olea europaea HOM05D005824 ORTHO05D007029 5.7e-21 105.5 231 35.5
TWI38G0226 Tripterygium wilfordii HOM05D005824 ORTHO05D007029 1.7e-20 104.0 240 35.0
AUR62006798 Chenopodium quinoa HOM05D005824 ORTHO05D007029 2.8e-20 103.2 233 37.3
Thhalv10003721m.g Eutrema salsugineum HOM05D005824 ORTHO05D007029 4.8e-20 102.4 212 35.8
Peaxi162Scf00357g00429 Petunia axillaris HOM05D005824 ORTHO05D007029 4.8e-20 102.4 227 34.8
Sp2g21220 Schrenkiella parvula HOM05D005824 ORTHO05D007029 8.2e-20 101.7 218 34.4
Carub.0006s2449 Capsella rubella HOM05D005824 ORTHO05D007029 1.1e-19 101.3 152 43.4
DCAR_005271 Daucus carota HOM05D005824 ORTHO05D007029 1.1e-19 101.3 152 44.1
Nitab4.5_0009690g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.1e-19 101.3 192 38.0
Duzib168G0004 Durio zibethinus HOM05D005824 ORTHO05D007029 1.4e-19 100.9 152 40.1
ECA247G2466 Erigeron canadensis HOM05D005824 ORTHO05D007029 1.4e-19 100.9 206 35.0
Eucgr.B01798 Eucalyptus grandis HOM05D005824 ORTHO05D007029 1.8e-19 100.5 233 31.8
Gohir.D02G178900 Gossypium hirsutum HOM05D005824 ORTHO05D007029 2.4e-19 100.1 246 32.9
Nn2g14227 Nelumbo nucifera HOM05D005824 ORTHO05D007029 5.3e-19 99.0 154 38.3
SGA_v2.0_scaffold33G13450 Striga asiatica HOM05D005824 ORTHO05D007029 5.3e-19 99.0 212 33.0
AT5G26760 Arabidopsis thaliana HOM05D005824 ORTHO05D007029 6.9e-19 98.6 212 36.3
Os05g0134300 Oryza sativa ssp. japonica HOM05D005824 ORTHO05D007029 1.2e-18 97.8 158 41.1
EL10Ac4g09532 Beta vulgaris HOM05D005824 ORTHO05D007029 1.5e-18 97.4 239 34.3
CAN.G1374.10 Capsicum annuum HOM05D005824 ORTHO05D007029 1.5e-18 97.4 219 34.7
PGSC0003DMG400018251 Solanum tuberosum HOM05D005824 ORTHO05D007029 2.0e-18 97.1 156 40.4
AUR62000450 Chenopodium quinoa HOM05D005824 ORTHO05D007029 7.7e-18 95.1 239 35.1
FAN02G4519 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.3e-17 94.4 223 35.4
Sopen01g044470 Solanum pennellii HOM05D005824 ORTHO05D007029 1.7e-17 94.0 228 34.2
Nitab4.5_0000185g0360 Nicotiana tabacum HOM05D005824 ORTHO05D007029 2.2e-17 93.6 148 41.9
HPP92_021934 Vanilla planifolia HOM05D005824 ORTHO05D007029 1.9e-16 90.5 171 36.3
AL6G38630 Arabidopsis lyrata HOM05D005824 ORTHO05D007029 3.2e-16 89.7 167 38.9
C02p58640 Brassica napus HOM05D005824 ORTHO05D007029 4.2e-16 89.4 230 34.8
Nitab4.5_0002783g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 3.6e-15 86.3 250 32.8
ATR0693G066 Amborella trichopoda HOM05D005824 ORTHO05D007029 4.7e-15 85.9 161 36.0
BcaNung06222 Brassica carinata HOM05D005824 ORTHO05D007029 4.7e-15 85.9 253 33.2
BolC2t11924H Brassica oleracea HOM05D005824 ORTHO05D007029 4.7e-15 85.9 253 33.2
Zm00001eb354720 Zea mays HOM05D005824 ORTHO05D007029 6.1e-15 85.5 244 30.7
Lsat_1_v5_gn_9_78801 Lactuca sativa HOM05D005824 ORTHO05D007029 1.8e-14 84.0 97 51.5
CARHR186810 Cardamine hirsuta HOM05D005824 ORTHO05D007029 3.0e-14 83.2 224 33.9
Phvul.007G265900 Phaseolus vulgaris HOM05D005824 ORTHO05D007029 3.9e-14 82.8 259 30.1
A02p39030 Brassica napus HOM05D005824 ORTHO05D007029 3.3e-13 79.7 255 31.0
BraA02t08872Z Brassica rapa HOM05D005824 ORTHO05D007029 3.3e-13 79.7 255 31.0
Aa31LG11G9880 Aethionema arabicum HOM05D005824 ORTHO05D007029 1.7e-12 77.4 238 32.4
Hma1.2p1_1553F.1_g290340 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 1.1e-11 74.7 181 35.9
Actinidia35501 Actinidia chinensis HOM05D005824 ORTHO05D007029 4.1e-11 72.8 67 52.2
SEGI_20129 Sequoiadendron giganteum HOM05D005824 ORTHO05D007029 2.6e-10 70.1 205 28.8
BcaNung03676 Brassica carinata HOM05D005824 ORTHO05D007029 3.8e-09 66.2 227 30.4
VMungo0251G1262 Vigna mungo HOM05D005824 ORTHO05D007029 5.0e-09 65.9 184 38.0
C07p41490 Brassica napus HOM05D005824 ORTHO05D007029 1.4e-08 64.3 212 29.7
BolC7t44682H Brassica oleracea HOM05D005824 ORTHO05D007029 1.4e-08 64.3 212 29.7
AUR62009842 Chenopodium quinoa HOM05D003327 ORTHO05D004535 3.6e-07 59.7 216 32.4


User provided reference genes

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