Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G1267 Cannabis sativa HOM05D005074 ORTHO05D006853 0.0e+00 1501.9 760 100.0
QL08p015889 Quercus lobata HOM05D005074 ORTHO05D006853 3.0e-294 1015.0 769 68.4
Cfa017171 Carpinus fangiana HOM05D005074 ORTHO05D006853 8.5e-289 996.9 767 67.9
Haze_21033 Corylus avellana HOM05D005074 ORTHO05D006853 1.1e-288 996.5 775 67.7
Prupe.6G280900 Prunus persica HOM05D005074 ORTHO05D006853 1.2e-285 986.5 761 66.9
Dinv13134 Davidia involucrata HOM05D005074 ORTHO05D006853 3.7e-284 981.5 759 67.2
MD04G1160300 Malus domestica HOM05D005074 ORTHO05D006853 7.7e-282 973.8 767 66.4
CiPaw.10G158300 Carya illinoinensis HOM05D005074 ORTHO05D006853 6.5e-281 970.7 762 66.4
CSS0046053 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 1.0e-278 963.4 770 65.1
Glyma.01G117800 Glycine max HOM05D005074 ORTHO05D006853 4.0e-278 961.4 763 65.1
CSS0047541 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 1.5e-277 959.5 770 64.8
Lalb_Chr07g0191391 Lupinus albus HOM05D005074 ORTHO05D006853 1.7e-276 956.1 769 65.4
TAR633G0154 Trochodendron aralioides HOM05D005074 ORTHO05D006853 2.2e-276 955.7 761 65.2
TWI74G0571 Tripterygium wilfordii HOM05D005074 ORTHO05D006853 1.1e-275 953.4 760 64.7
arahy.Tifrunner.gnm1.ann1.N71AR0 Arachis hypogaea HOM05D005074 ORTHO05D006853 5.0e-273 944.5 765 64.8
Potri.016G120200 Populus trichocarpa HOM05D005074 ORTHO05D006853 2.1e-271 939.1 768 64.6
RcHm_v2.0_Chr3g0462521 Rosa chinensis HOM05D005074 ORTHO05D006853 2.8e-271 938.7 765 63.9
Ciclev10011130m.g Citrus clementina HOM05D005074 ORTHO05D006853 1.0e-270 936.8 764 63.1
Medtr1g024820 Medicago truncatula HOM05D005074 ORTHO05D006853 2.3e-270 935.6 754 63.5
Phvul.010G073200 Phaseolus vulgaris HOM05D005074 ORTHO05D006853 1.5e-269 932.9 760 63.9
Sabra16G0116100 Salix brachista HOM05D005074 ORTHO05D006853 1.5e-269 932.9 766 64.4
FvH4_6g11090 Fragaria vesca HOM05D005074 ORTHO05D006853 3.7e-268 928.3 767 63.2
Psat6g003720 Pisum sativum HOM05D005074 ORTHO05D006853 4.9e-268 927.9 759 62.7
MBI03_g18944_MAGBIO Magnolia biondii HOM05D005074 ORTHO05D006853 7.0e-267 924.1 772 61.7
MELO3C009144.2 Cucumis melo HOM05D005074 ORTHO05D006853 3.9e-265 918.3 764 63.1
VMungo0331G1905 Vigna mungo HOM05D005074 ORTHO05D006853 3.9e-265 918.3 762 62.6
ClCG10G022350 Citrullus lanatus HOM05D005074 ORTHO05D006853 3.3e-264 915.2 768 62.6
TPR.G34365 Trifolium pratense HOM05D005074 ORTHO05D006853 7.3e-264 914.1 751 63.6
Lj5g0028092 Lotus japonicus HOM05D005074 ORTHO05D006853 9.5e-264 913.7 764 62.7
GSVIVG01003941001 Vitis vinifera HOM05D005074 ORTHO05D006853 9.5e-264 913.7 765 62.0
Actinidia29087 Actinidia chinensis HOM05D005074 ORTHO05D006853 3.6e-263 911.8 736 64.9
FAN02G3586 Fragaria x ananassa HOM05D005074 ORTHO05D006853 6.2e-263 911.0 778 62.3
FAN05G5223 Fragaria x ananassa HOM05D005074 ORTHO05D006853 1.8e-262 909.4 776 62.0
Nn2g10923 Nelumbo nucifera HOM05D005074 ORTHO05D006853 2.3e-262 909.1 767 61.9
EL10Ac5g12524 Beta vulgaris HOM05D005074 ORTHO05D006853 6.8e-262 907.5 760 61.8
Hma1.2p1_0501F.1_g167650 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 8.9e-262 907.1 732 64.6
PGR031G0257 Punica granatum HOM05D005074 ORTHO05D006853 8.9e-262 907.1 762 61.4
Ca_13410_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 1.2e-261 906.7 742 62.9
Ca_13419_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 1.2e-261 906.7 742 62.9
CsaV3_3G033540 Cucumis sativus L. HOM05D005074 ORTHO05D006853 2.6e-261 905.6 763 62.4
FAN14G3962 Fragaria x ananassa HOM05D005074 ORTHO05D006853 4.4e-261 904.8 777 61.8
Gohir.D04G133000 Gossypium hirsutum HOM05D005074 ORTHO05D006853 1.7e-260 902.9 761 60.4
Sed0022379 Sechium edule HOM05D005074 ORTHO05D006853 3.7e-260 901.7 755 61.7
Ah.02g115540 Amaranthus hybridus HOM05D005074 ORTHO05D006853 1.4e-259 899.8 767 61.4
PSO339G4313 Papaver somniferum HOM05D005074 ORTHO05D006853 2.4e-259 899.0 733 63.8
Gohir.A04G093700 Gossypium hirsutum HOM05D005074 ORTHO05D006853 5.4e-259 897.9 756 60.7
Sopen09g001080 Solanum pennellii HOM05D005074 ORTHO05D006853 7.0e-259 897.5 759 62.2
Solyc09g005100.4 Solanum lycopersicum HOM05D005074 ORTHO05D006853 1.2e-258 896.7 766 61.5
PGSC0003DMG400006257 Solanum tuberosum HOM05D005074 ORTHO05D006853 2.0e-258 896.0 748 63.0
Gorai.012G116900 Gossypium raimondii HOM05D005074 ORTHO05D006853 2.7e-258 895.6 754 60.9
AUR62030501 Chenopodium quinoa HOM05D005074 ORTHO05D006853 3.5e-258 895.2 759 61.5
Aqoxy4G02460 Aquilegia oxysepala HOM05D005074 ORTHO05D006853 1.3e-257 893.3 825 58.8
Duzib128G0037 Durio zibethinus HOM05D005074 ORTHO05D006853 1.3e-257 893.3 761 60.2
Peaxi162Scf01132g00134 Petunia axillaris HOM05D005074 ORTHO05D006853 1.3e-257 893.3 726 64.3
PSO384G2802 Papaver somniferum HOM05D005074 ORTHO05D006853 2.3e-257 892.5 762 61.7
Rhsim05G0219800 Rhododendron simsii HOM05D005074 ORTHO05D006853 2.5e-256 889.0 757 62.0
Cc06_g01060 Coffea canephora HOM05D005074 ORTHO05D006853 6.4e-252 874.4 803 57.9
Nitab4.5_0000195g0210 Nicotiana tabacum HOM05D005074 ORTHO05D006853 1.4e-251 873.2 751 61.4
Nitab4.5_0012964g0020 Nicotiana tabacum HOM05D005074 ORTHO05D006853 1.4e-251 873.2 751 61.1
CAN.G41.5 Capsicum annuum HOM05D005074 ORTHO05D006853 7.1e-251 870.9 749 60.7
Lj2C71T3 Lonicera japonica HOM05D005074 ORTHO05D006853 7.1e-251 870.9 728 63.5
DCAR_006624 Daucus carota HOM05D005074 ORTHO05D006853 3.5e-250 868.6 781 58.9
SGA_v2.0_scaffold85G26714 Striga asiatica HOM05D005074 ORTHO05D006853 4.7e-247 858.2 743 60.2
HanXRQChr12g0383191 Helianthus annuus HOM05D005074 ORTHO05D006853 5.8e-245 851.3 749 59.5
Thecc.05G011500 Theobroma cacao HOM05D005074 ORTHO05D006853 4.9e-244 848.2 1014 48.5
THA.LOC104816650 Tarenaya hassleriana HOM05D005074 ORTHO05D006853 8.4e-244 847.4 755 57.9
AL6G10830 Arabidopsis lyrata HOM05D005074 ORTHO05D006853 7.1e-243 844.3 746 60.2
MSTRG.18991 Avicennia marina HOM05D005074 ORTHO05D006853 7.1e-243 844.3 760 57.6
AT5G01310 Arabidopsis thaliana HOM05D005074 ORTHO05D006853 2.1e-242 842.8 750 59.6
Sp6g40630 Schrenkiella parvula HOM05D005074 ORTHO05D006853 1.3e-241 840.1 744 59.3
Aa31LG1G22940 Aethionema arabicum HOM05D005074 ORTHO05D006853 6.2e-239 831.2 726 59.5
C09p74610 Brassica napus HOM05D005074 ORTHO05D006853 1.8e-238 829.7 751 58.9
BolC9t60195H Brassica oleracea HOM05D005074 ORTHO05D006853 1.8e-238 829.7 739 59.4
Carub.0006s0050 Capsella rubella HOM05D005074 ORTHO05D006853 7.6e-237 824.3 750 58.9
Hund10968 Selenicereus undatus HOM05D005074 ORTHO05D006853 1.3e-236 823.5 717 60.7
AUR62030792 Chenopodium quinoa HOM05D005074 ORTHO05D006853 2.2e-236 822.8 725 60.1
A10p33710 Brassica napus HOM05D005074 ORTHO05D006853 8.4e-236 820.8 751 57.5
CARHR211670 Cardamine hirsuta HOM05D005074 ORTHO05D006853 1.1e-235 820.5 732 59.4
Thhalv10012562m.g Eutrema salsugineum HOM05D005074 ORTHO05D006853 1.9e-235 819.7 787 56.5
BraA10t45403Z Brassica rapa HOM05D005074 ORTHO05D006853 2.7e-234 815.8 740 57.7
Migut.J00131 Erythranthe guttata HOM05D005074 ORTHO05D006853 1.6e-231 806.6 756 55.8
Zm00001eb013510 Zea mays HOM05D005074 ORTHO05D006853 5.1e-225 785.0 767 54.4
Atru.chr8.2282 Acer truncatum HOM05D005074 ORTHO05D006853 1.1e-222 777.3 658 61.9
COL.COLO4_14500 Corchorus olitorius HOM05D005074 ORTHO05D006853 1.4e-222 776.9 966 47.7
Lsat_1_v5_gn_8_100780 Lactuca sativa HOM05D005074 ORTHO05D006853 2.0e-221 773.1 752 55.7
ATR0716G066 Amborella trichopoda HOM05D005074 ORTHO05D006853 1.7e-220 770.0 868 49.9
unitig_27.g24848 Utricularia gibba HOM05D005074 ORTHO05D006853 9.3e-219 764.2 763 52.7
HPP92_025102 Vanilla planifolia HOM05D005074 ORTHO05D006853 1.8e-217 760.0 704 57.2
BcaC06g31973 Brassica carinata HOM05D005074 ORTHO05D006853 6.7e-217 758.1 753 55.1
SalBow5G0276 Salvia bowleyana HOM05D005074 ORTHO05D006853 8.7e-217 757.7 754 54.9
SalBow5G3519 Salvia bowleyana HOM05D005074 ORTHO05D006853 1.1e-216 757.3 754 54.9
Eucgr.A00552 Eucalyptus grandis HOM05D005074 ORTHO05D006853 3.1e-214 749.2 644 60.9
Manes.09G106200 Manihot esculenta HOM05D005074 ORTHO05D006853 1.8e-209 733.4 611 63.2
CDE08G0259 Ceratophyllum demersum HOM05D005074 ORTHO05D006853 1.4e-206 723.8 768 51.7
vmacro20302 Vaccinium macrocarpon HOM05D005074 ORTHO05D006853 1.8e-206 723.4 755 54.6
FAN09G4669 Fragaria x ananassa HOM05D005074 ORTHO05D006853 6.1e-178 628.6 615 57.2
ECA236G3605 Erigeron canadensis HOM05D005074 ORTHO05D006853 7.5e-176 621.7 619 55.1
Hma1.2p1_0501F.1_g167660 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 7.5e-176 621.7 501 65.7
SMO119G0484 Selaginella moellendorffii HOM05D005074 ORTHO05D006853 1.3e-175 620.9 738 47.6
Sc22g0002590 Simmondsia chinensis HOM05D005074 ORTHO05D006853 9.1e-174 614.8 566 58.5
Pp3c11_18160 Physcomitrium patens HOM05D005074 ORTHO05D006853 1.9e-163 580.5 780 43.8
Mapoly0120s0055 Marchantia polymorpha HOM05D005074 ORTHO05D006853 2.0e-160 570.5 751 43.8
Cpa.g.sc120.24 Carica papaya HOM05D005074 ORTHO05D006853 2.8e-159 566.6 751 45.3
arahy.Tifrunner.gnm1.ann1.W8IS2K Arachis hypogaea HOM05D005074 ORTHO05D006853 5.8e-136 489.2 385 64.9
Os03g0293400 Oryza sativa ssp. japonica HOM05D005074 ORTHO05D006853 1.5e-131 474.6 400 59.5
Aa31LG1G22950 Aethionema arabicum HOM05D005074 ORTHO05D006853 8.4e-119 432.2 660 41.7
AagrBONN_evm.TU.Sc2ySwM_362.194 Anthoceros agrestis HOM05D005074 ORTHO05D006853 3.7e-106 390.2 498 44.6
Aa31LG8G1910 Aethionema arabicum HOM05D005074 ORTHO05D006853 3.1e-105 387.1 495 42.2
Aa31LG1G22960 Aethionema arabicum HOM05D005074 ORTHO05D006853 4.2e-102 376.7 497 43.1
Oeu033574.2 Olea europaea HOM05D005074 ORTHO05D006853 1.8e-89 334.7 724 33.7
FAN09G1779 Fragaria x ananassa HOM05D005074 ORTHO05D006853 1.1e-86 325.5 331 54.4
SHI12858 Sapria himalayana HOM05D005074 ORTHO05D006853 6.1e-85 319.7 320 55.0
FAN09G0802 Fragaria x ananassa HOM05D005074 ORTHO05D006853 5.9e-80 303.1 262 62.2
FAN09G0145 Fragaria x ananassa HOM05D005074 ORTHO05D006853 1.4e-78 298.5 297 55.2
CBR_g45475 Chara braunii HOM05D005074 ORTHO05D006853 3.0e-76 290.8 1037 25.6
Oeu063389.1 Olea europaea HOM05D005074 ORTHO05D006853 1.9e-70 271.6 182 68.7
RcHm_v2.0_Chr3g0462501 Rosa chinensis HOM05D005074 ORTHO05D006853 1.0e-63 249.2 279 50.5
MD12G1172800 Malus domestica HOM05D005074 ORTHO05D006853 3.0e-60 237.7 230 56.5
Duzib093G1335 Durio zibethinus HOM05D005074 ORTHO05D006853 4.8e-58 230.3 382 40.1
MD05G1095500 Malus domestica HOM05D005074 ORTHO05D006853 1.4e-57 228.8 160 66.2
Aa31sc2673G10 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.7e-55 221.9 296 37.8
BcaC06g31962 Brassica carinata HOM05D005074 ORTHO05D006853 5.2e-52 210.3 162 62.3
Cre06.g297904 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D006853 3.7e-50 204.1 728 26.6
AagrBONN_evm.TU.Sc2ySwM_344.4419 Anthoceros agrestis HOM05D005074 ORTHO05D006853 3.8e-47 194.1 181 53.0
Glyma.U000401 Glycine max HOM05D005074 ORTHO05D006853 3.0e-44 184.5 124 70.2
Glyma.U000501 Glycine max HOM05D005074 ORTHO05D006853 6.8e-36 156.8 171 52.0
Ca_06765_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 5.0e-31 140.6 243 38.3
Rhsim05G0219600 Rhododendron simsii HOM05D005074 ORTHO05D006853 8.9e-28 129.8 287 34.5
Medtr1g024155 Medicago truncatula HOM05D005074 ORTHO05D006853 1.6e-24 119.0 101 63.4
Aa31LG1G22970 Aethionema arabicum HOM05D005074 ORTHO05D006853 4.6e-24 117.5 100 57.0
MCO14G225 Micromonas commoda HOM05D005074 ORTHO05D006853 1.6e-21 109.0 189 34.9
Aa31sc1955G20 Aethionema arabicum HOM05D005074 ORTHO05D006853 7.5e-19 100.1 117 47.9
Medtr8g092520 Medicago truncatula HOM05D005074 ORTHO05D006853 2.7e-16 91.7 64 73.4
Cre02.g079150 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D034455 2.0e-11 75.5 163 29.4
Cre05.g239450 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D034455 2.0e-11 75.5 168 32.1
Hund10966 Selenicereus undatus HOM05D005074 ORTHO05D023363 2.6e-11 75.1 54 63.0
Aa31LG1G19700 Aethionema arabicum HOM05D005074 ORTHO05D023363 1.3e-10 72.8 67 50.7
PSO675G8941 Papaver somniferum HOM05D005074 ORTHO05D006853 1.7e-10 72.4 123 31.7
Pp3c2_27000 Physcomitrium patens HOM05D005074 ORTHO05D034455 2.9e-10 71.6 163 25.8
Cfa025975 Carpinus fangiana HOM05D005074 ORTHO05D006853 3.2e-09 68.2 189 29.1
Aa31LG1G19680 Aethionema arabicum HOM05D005074 ORTHO05D006853 3.5e-08 64.7 55 60.0
Aa31sc1955G10 Aethionema arabicum HOM05D005074 ORTHO05D023363 4.3e-06 57.8 41 61.0
Aa31sc2119G10 Aethionema arabicum HOM05D005074 ORTHO05D023363 4.3e-06 57.8 41 61.0
SHI12859 Sapria himalayana HOM05D005074 ORTHO05D023363 7.3e-06 57.0 37 62.2


User provided reference genes

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