Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G0044 Cannabis sativa HOM05D005064 ORTHO05D006611 0.0e+00 2159.0 1123 100.0
QL07p034075 Quercus lobata HOM05D005064 ORTHO05D006611 0.0e+00 1210.3 1130 60.5
Atru.chr8.2328 Acer truncatum HOM05D005064 ORTHO05D006611 0.0e+00 1180.6 1132 57.1
Ciclev10013403m.g Citrus clementina HOM05D005064 ORTHO05D006611 0.0e+00 1154.0 1136 57.8
Manes.09G111200 Manihot esculenta HOM05D005064 ORTHO05D006611 0.0e+00 1147.9 1133 55.4
Dinv35394 Davidia involucrata HOM05D005064 ORTHO05D006611 0.0e+00 1137.5 1117 57.7
Haze_21075 Corylus avellana HOM05D005064 ORTHO05D006611 0.0e+00 1131.3 1166 57.1
Duzib093G0745 Durio zibethinus HOM05D005064 ORTHO05D006611 0.0e+00 1121.3 1136 53.3
GSVIVG01030280001 Vitis vinifera HOM05D005064 ORTHO05D006611 0.0e+00 1115.5 1156 53.7
Prupe.4G287200 Prunus persica HOM05D005064 ORTHO05D006611 0.0e+00 1112.8 1148 56.4
TWI74G0298 Tripterygium wilfordii HOM05D005064 ORTHO05D006611 0.0e+00 1095.5 1140 52.9
Potri.014G189600 Populus trichocarpa HOM05D005064 ORTHO05D006611 0.0e+00 1093.6 1195 52.8
TAR633G1737 Trochodendron aralioides HOM05D005064 ORTHO05D006611 0.0e+00 1093.2 1144 56.1
Thecc.05G007600 Theobroma cacao HOM05D005064 ORTHO05D006611 0.0e+00 1091.6 1132 54.0
Lj2C68T2 Lonicera japonica HOM05D005064 ORTHO05D006611 0.0e+00 1088.2 1131 55.0
CSS0042379 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 0.0e+00 1085.9 1151 52.7
Gorai.012G119100 Gossypium raimondii HOM05D005064 ORTHO05D006611 0.0e+00 1079.7 1168 50.9
RcHm_v2.0_Chr3g0484931 Rosa chinensis HOM05D005064 ORTHO05D006611 0.0e+00 1079.7 1254 51.2
Eucgr.K02953 Eucalyptus grandis HOM05D005064 ORTHO05D006611 5.8e-310 1067.8 1136 54.1
CsaV3_3G033440 Cucumis sativus L. HOM05D005064 ORTHO05D006611 9.9e-310 1067.0 1133 53.8
MELO3C009135.2 Cucumis melo HOM05D005064 ORTHO05D006611 2.5e-305 1052.4 1158 53.3
Cpa.g.sc5.230 Carica papaya HOM05D005064 ORTHO05D006611 3.6e-304 1048.5 1132 52.1
Sed0013669 Sechium edule HOM05D005064 ORTHO05D006611 1.5e-302 1043.1 1135 53.7
Sabra14G0144800 Salix brachista HOM05D005064 ORTHO05D006611 3.4e-302 1042.0 1222 48.6
MD01G1008700 Malus domestica HOM05D005064 ORTHO05D006611 1.0e-298 1030.4 1238 49.8
ClCG10G022430 Citrullus lanatus HOM05D005064 ORTHO05D006611 8.7e-298 1027.3 1057 55.6
vmacro04273 Vaccinium macrocarpon HOM05D005064 ORTHO05D006611 2.5e-297 1025.8 1153 52.6
FAN23G3111 Fragaria x ananassa HOM05D005064 ORTHO05D006611 7.4e-297 1024.2 1236 48.5
Gohir.D04G135300 Gossypium hirsutum HOM05D005064 ORTHO05D006611 1.8e-295 1019.6 976 55.3
FvH4_1g25820 Fragaria vesca HOM05D005064 ORTHO05D006611 6.9e-295 1017.7 1271 47.4
Gohir.A04G095400 Gossypium hirsutum HOM05D005064 ORTHO05D006611 6.9e-295 1017.7 976 55.1
Nn2g11003 Nelumbo nucifera HOM05D005064 ORTHO05D006611 1.4e-287 993.4 1220 48.4
FAN19G0240 Fragaria x ananassa HOM05D005064 ORTHO05D006611 4.1e-287 991.9 1288 46.4
Rhsim05G0225400 Rhododendron simsii HOM05D005064 ORTHO05D006611 6.1e-283 978.0 1055 52.4
Cc06_g00810 Coffea canephora HOM05D005064 ORTHO05D006611 1.3e-280 970.3 1168 48.3
COL.COLO4_14461 Corchorus olitorius HOM05D005064 ORTHO05D006611 1.1e-276 957.2 1117 47.7
THA.LOC104816179 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 1.6e-275 953.4 1207 46.6
Ca_16367_v3 Cicer arietinum L. HOM05D005064 ORTHO05D006611 2.3e-274 949.5 1145 48.0
EL10Ac5g12491 Beta vulgaris HOM05D005064 ORTHO05D006611 5.0e-269 931.8 1138 49.6
Lj6g0012785 Lotus japonicus HOM05D005064 ORTHO05D006611 6.5e-269 931.4 1143 46.6
HanXRQChr15g0486851 Helianthus annuus HOM05D005064 ORTHO05D006611 1.1e-268 930.6 1180 46.1
AL6G10420 Arabidopsis lyrata HOM05D005064 ORTHO05D006611 3.0e-266 922.5 1168 47.5
MSTRG.18977 Avicennia marina HOM05D005064 ORTHO05D006611 5.1e-266 921.8 1160 46.6
Thhalv10012491m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 1.5e-265 920.2 1176 45.9
Psat5g101280 Pisum sativum HOM05D005064 ORTHO05D006611 2.6e-265 919.5 903 54.0
Lalb_Chr22g0360891 Lupinus albus HOM05D005064 ORTHO05D006611 4.4e-265 918.7 1082 49.2
AUR62030766 Chenopodium quinoa HOM05D005064 ORTHO05D006611 2.8e-264 916.0 1141 49.2
AT5G01630 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 8.2e-264 914.4 1167 45.8
Medtr3g083250 Medicago truncatula HOM05D005064 ORTHO05D006611 7.0e-263 911.4 951 52.1
Aqoxy2G00779 Aquilegia oxysepala HOM05D005064 ORTHO05D006611 7.7e-262 907.9 1241 45.9
THA.LOC104798645 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 1.3e-261 907.1 1171 48.2
CiPaw.09G214500 Carya illinoinensis HOM05D005064 ORTHO05D006611 2.2e-261 906.4 645 68.8
FAN28G2142 Fragaria x ananassa HOM05D005064 ORTHO05D006611 6.5e-261 904.8 1236 45.1
AUR62030526 Chenopodium quinoa HOM05D005064 ORTHO05D006611 1.1e-260 904.0 1141 48.9
CARHR211980 Cardamine hirsuta HOM05D005064 ORTHO05D006611 1.5e-260 903.7 1178 44.8
Migut.J00101 Erythranthe guttata HOM05D005064 ORTHO05D006611 1.5e-260 903.7 1162 46.1
TPR.G19329 Trifolium pratense HOM05D005064 ORTHO05D006611 2.5e-260 902.9 939 52.5
Nitab4.5_0010437g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 1.6e-259 900.2 1176 46.4
Carub.0006s0020 Capsella rubella HOM05D005064 ORTHO05D006611 8.0e-259 897.9 1170 45.0
Sopen02g008440 Solanum pennellii HOM05D005064 ORTHO05D006611 3.0e-258 896.0 1157 45.2
BcaB01g06242 Brassica carinata HOM05D005064 ORTHO05D006611 2.0e-257 893.3 1192 44.0
VMungo0540G1710 Vigna mungo HOM05D005064 ORTHO05D006611 5.7e-257 891.7 892 53.4
CAN.G989.4 Capsicum annuum HOM05D005064 ORTHO05D006611 7.7e-254 881.3 1111 46.1
Peaxi162Scf00744g00354 Petunia axillaris HOM05D005064 ORTHO05D006611 1.0e-253 880.9 1178 44.8
Thhalv10027627m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 1.3e-253 880.6 1136 44.9
PSO339G1571 Papaver somniferum HOM05D005064 ORTHO05D006611 2.9e-253 879.4 1250 46.0
arahy.Tifrunner.gnm1.ann1.XPQW08 Arachis hypogaea HOM05D005064 ORTHO05D006611 3.8e-253 879.0 1089 47.2
Hund25531 Selenicereus undatus HOM05D005064 ORTHO05D006611 6.5e-253 878.2 1162 44.7
Aa31LG1G23250 Aethionema arabicum HOM05D005064 ORTHO05D006611 1.1e-252 877.5 1196 43.9
arahy.Tifrunner.gnm1.ann1.168PWC Arachis hypogaea HOM05D005064 ORTHO05D006611 2.7e-251 872.8 1089 47.0
AT4G00020 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 1.8e-250 870.2 1181 45.9
A03p00180 Brassica napus HOM05D005064 ORTHO05D006611 2.8e-248 862.8 1143 44.5
Sp7g05130 Schrenkiella parvula HOM05D005064 ORTHO05D006611 2.0e-246 856.7 1142 43.9
BraA03t09408Z Brassica rapa HOM05D005064 ORTHO05D006611 2.7e-246 856.3 1252 42.0
ECA234G3016 Erigeron canadensis HOM05D005064 ORTHO05D006611 2.9e-245 852.8 1076 45.3
BolC3t12595H Brassica oleracea HOM05D005064 ORTHO05D006611 6.5e-245 851.7 1195 43.4
Aa31sc411G40 Aethionema arabicum HOM05D005064 ORTHO05D006611 4.2e-244 849.0 1180 43.2
C03p00330 Brassica napus HOM05D005064 ORTHO05D006611 4.4e-241 839.0 1173 43.6
PSO801G0135 Papaver somniferum HOM05D005064 ORTHO05D006611 3.7e-240 835.9 1254 44.6
BcaB01g06109 Brassica carinata HOM05D005064 ORTHO05D006611 1.8e-239 833.6 1161 43.5
Glyma.13G010700 Glycine max HOM05D005064 ORTHO05D006611 1.2e-238 830.9 1146 44.4
Lsat_1_v5_gn_5_149520 Lactuca sativa HOM05D005064 ORTHO05D006611 2.7e-238 829.7 1045 48.2
SGA_v2.0_scaffold85G26687 Striga asiatica HOM05D005064 ORTHO05D006611 3.5e-238 829.3 1161 44.0
C06p17140 Brassica napus HOM05D005064 ORTHO05D006611 2.7e-230 803.1 1149 42.6
A05p16640 Brassica napus HOM05D005064 ORTHO05D006611 1.9e-228 797.0 1157 42.4
BolC6t36909H Brassica oleracea HOM05D005064 ORTHO05D006611 5.6e-228 795.4 1150 42.3
BraA05t20569Z Brassica rapa HOM05D005064 ORTHO05D006611 2.1e-227 793.5 1129 43.1
Sp6g40890 Schrenkiella parvula HOM05D005064 ORTHO05D006611 6.8e-226 788.5 686 57.0
BcaC08g44292 Brassica carinata HOM05D005064 ORTHO05D006611 2.0e-225 786.9 1175 40.7
SalBow5G0042 Salvia bowleyana HOM05D005064 ORTHO05D006611 2.3e-221 773.5 1141 43.8
SalBow5G1296 Salvia bowleyana HOM05D005064 ORTHO05D006611 2.3e-221 773.5 1141 43.8
ATR0594G137 Amborella trichopoda HOM05D005064 ORTHO05D006611 4.0e-218 762.7 1130 41.3
Ah.12g059020 Amaranthus hybridus HOM05D005064 ORTHO05D006611 1.6e-214 750.7 1074 44.7
MBI03_g13049_MAGBIO Magnolia biondii HOM05D005064 ORTHO05D006611 1.1e-212 744.6 639 60.6
HPP92_013842 Vanilla planifolia HOM05D005064 ORTHO05D006611 1.6e-211 740.7 912 46.6
Os01g0164800 Oryza sativa ssp. japonica HOM05D005064 ORTHO05D006611 6.2e-211 738.8 1098 41.6
BcaB04g17743 Brassica carinata HOM05D005064 ORTHO05D006611 8.9e-202 708.4 1068 43.7
SHI12869 Sapria himalayana HOM05D005064 ORTHO05D006611 9.9e-201 704.9 947 45.7
HPP92_013858 Vanilla planifolia HOM05D005064 ORTHO05D006611 6.6e-197 692.2 637 54.5
Zm00001eb419130 Zea mays HOM05D005064 ORTHO05D006611 4.3e-196 689.5 900 45.7
DCAR_030962 Daucus carota HOM05D005064 ORTHO05D008158 9.9e-193 678.3 992 42.4
CDE04G0109 Ceratophyllum demersum HOM05D005064 ORTHO05D006611 1.9e-191 674.1 1116 42.2
Medtr0191s0030 Medicago truncatula HOM05D005064 ORTHO05D006611 4.8e-187 659.4 760 48.7
Sc07g0001460 Simmondsia chinensis HOM05D005064 ORTHO05D006611 7.6e-177 625.5 907 42.2
SEGI_30642 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 3.0e-173 613.6 956 40.1
Medtr6g033115 Medicago truncatula HOM05D005064 ORTHO05D006611 1.5e-172 611.3 666 50.6
FAN26G2490 Fragaria x ananassa HOM05D005064 ORTHO05D006611 5.3e-162 576.2 427 66.7
CSS0001431 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 3.0e-157 560.5 510 58.6
Oeu026978.1 Olea europaea HOM05D005064 ORTHO05D006611 1.5e-156 558.1 744 45.4
Solyc02g050200.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 2.7e-150 537.3 822 40.5
Nitab4.5_0001246g0050 Nicotiana tabacum HOM05D005064 ORTHO05D006611 2.8e-147 527.3 772 42.9
Phvul.006G005800 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 3.3e-140 503.8 562 49.3
AagrBONN_evm.TU.Sc2ySwM_362.1800 Anthoceros agrestis HOM05D005064 ORTHO05D006611 9.8e-116 422.5 815 35.3
Mapoly0045s0096 Marchantia polymorpha HOM05D005064 ORTHO05D006611 9.5e-111 406.0 742 36.3
Haze_21131 Corylus avellana HOM05D005064 ORTHO05D006611 1.2e-110 405.6 908 34.6
Haze_21134 Corylus avellana HOM05D005064 ORTHO05D006611 1.4e-109 402.1 908 34.4
Phvul.L001612 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 2.6e-100 371.3 304 64.5
Solyc02g050210.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 2.4e-98 364.8 336 57.1
SEGI_27109 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 1.2e-97 362.5 608 38.8
Nitab4.5_0021252g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 2.3e-96 358.2 705 37.4
unitig_21.g20911 Utricularia gibba HOM05D005064 ORTHO05D006611 1.1e-95 355.9 1068 29.9
Oeu027330.4 Olea europaea HOM05D005064 ORTHO05D006611 2.4e-93 348.2 312 58.3
TPR.G18982 Trifolium pratense HOM05D005064 ORTHO05D006611 1.7e-83 315.5 267 59.2
Nitab4.5_0006212g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 6.0e-81 307.0 294 55.1
CiPaw.09G214600 Carya illinoinensis HOM05D005064 ORTHO05D006611 3.3e-71 274.6 460 46.3
CBR_g19766 Chara braunii HOM05D005064 ORTHO05D000048 2.4e-66 258.5 419 35.3
SEGI_19397 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 1.3e-64 252.7 414 39.6
CSS0019886 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 1.9e-34 152.5 318 36.8
MCO02G178 Micromonas commoda HOM05D005064 ORTHO05D006611 1.4e-29 136.3 529 26.1
CAN.G989.5 Capsicum annuum HOM05D005064 ORTHO05D000001 4.5e-28 131.3 272 33.5
CBR_g19769 Chara braunii HOM05D005064 ORTHO05D006611 6.5e-27 127.5 293 27.6
Cre13.g566900 Chlamydomonas reinhardtii HOM05D005064 ORTHO05D006611 3.3e-23 115.2 257 29.6
Sabra16G0120100 Salix brachista HOM05D005064 ORTHO05D050424 4.1e-13 81.6 59 62.7
DCAR_028424 Daucus carota HOM05D005064 ORTHO05D006611 2.3e-08 65.9 142 35.9
DCAR_009651 Daucus carota HOM05D005064 ORTHO05D006611 4.0e-08 65.1 137 35.8
Sabra06G0080700 Salix brachista HOM05D005064 ORTHO05D006611 6.8e-08 64.3 47 66.0
SHI12870 Sapria himalayana HOM05D005064 ORTHO05D006611 2.6e-07 62.4 127 34.6


User provided reference genes

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