Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G0005 Cannabis sativa HOM05D004774 ORTHO05D005514 4.8e-114 414.5 200 100.0
CiPaw.06G137100 Carya illinoinensis HOM05D004774 ORTHO05D005514 2.5e-83 312.4 199 71.9
GSVIVG01000730001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.3e-82 310.1 192 74.5
QL08p045287 Quercus lobata HOM05D004774 ORTHO05D005514 2.4e-81 305.8 199 69.8
GSVIVG01011075001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.5e-80 303.1 192 72.4
Cpa.g.sc52.135 Carica papaya HOM05D004774 ORTHO05D005514 2.6e-80 302.4 199 68.8
Thecc.01G266900 Theobroma cacao HOM05D004774 ORTHO05D005514 5.0e-79 298.1 207 68.1
Dinv40162 Davidia involucrata HOM05D004774 ORTHO05D005514 5.5e-78 294.7 192 71.4
Dinv22475 Davidia involucrata HOM05D004774 ORTHO05D005514 6.1e-77 291.2 192 70.3
Duzib138G0586 Durio zibethinus HOM05D004774 ORTHO05D005514 1.0e-76 290.4 207 67.1
TWI12G1255 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 1.0e-76 290.4 199 67.8
MD08G1227600 Malus domestica HOM05D004774 ORTHO05D005514 1.4e-76 290.0 197 68.5
Prupe.2G103200 Prunus persica HOM05D004774 ORTHO05D005514 2.3e-76 289.3 198 69.2
TWI18G0081 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 6.7e-76 287.7 198 67.7
Cc01_g18810 Coffea canephora HOM05D004774 ORTHO05D005514 4.4e-75 285.0 192 68.2
Gorai.001G243200 Gossypium raimondii HOM05D004774 ORTHO05D005514 7.4e-75 284.3 207 65.2
Gohir.A07G209300 Gossypium hirsutum HOM05D004774 ORTHO05D005514 1.3e-74 283.5 207 64.7
Atru.chr5.1584 Acer truncatum HOM05D004774 ORTHO05D005514 1.7e-74 283.1 192 68.8
CAN.G1190.29 Capsicum annuum HOM05D004774 ORTHO05D005514 1.7e-74 283.1 192 69.3
Cfa005024 Carpinus fangiana HOM05D004774 ORTHO05D005514 1.7e-74 283.1 196 65.8
TAR636G0805 Trochodendron aralioides HOM05D004774 ORTHO05D005514 1.7e-74 283.1 186 69.9
Gohir.D07G215400 Gossypium hirsutum HOM05D004774 ORTHO05D005514 2.2e-74 282.7 207 64.7
Sopen07g002340 Solanum pennellii HOM05D004774 ORTHO05D005514 3.7e-74 282.0 192 68.8
Nitab4.5_0003289g0060 Nicotiana tabacum HOM05D004774 ORTHO05D005514 4.8e-74 281.6 193 69.4
THA.LOC104815831 Tarenaya hassleriana HOM05D004774 ORTHO05D005514 8.2e-74 280.8 198 63.6
Nn4g23666 Nelumbo nucifera HOM05D004774 ORTHO05D005514 3.1e-73 278.9 192 67.2
AL1G16800 Arabidopsis lyrata HOM05D004774 ORTHO05D005514 4.1e-73 278.5 201 61.2
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 1.2e-72 276.9 201 61.2
Duzib211G0109 Durio zibethinus HOM05D004774 ORTHO05D005514 2.6e-72 275.8 206 63.6
ClCG09G004860 Citrullus lanatus HOM05D004774 ORTHO05D005514 3.4e-72 275.4 215 60.5
Solyc07g006240.4 Solanum lycopersicum HOM05D004774 ORTHO05D005514 4.5e-72 275.0 198 66.7
Duzib211G0067 Durio zibethinus HOM05D004774 ORTHO05D005514 5.9e-72 274.6 206 64.1
CSS0049587 Camellia sinensis var. sinensis HOM05D004774 ORTHO05D005514 1.0e-71 273.9 235 57.4
Lj4g0014477 Lotus japonicus HOM05D004774 ORTHO05D005514 1.3e-71 273.5 200 65.0
Carub.0001s0611 Capsella rubella HOM05D004774 ORTHO05D005514 2.2e-71 272.7 200 60.0
Lalb_Chr17g0348441 Lupinus albus HOM05D004774 ORTHO05D005514 2.9e-71 272.3 201 65.7
MSTRG.18290 Avicennia marina HOM05D004774 ORTHO05D005514 5.0e-71 271.6 202 61.9
Potri.002G044500 Populus trichocarpa HOM05D004774 ORTHO05D005514 5.0e-71 271.6 192 65.6
Ca_26554_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 1.9e-70 269.6 196 65.3
Ciclev10023915m.g Citrus clementina HOM05D004774 ORTHO05D005514 1.9e-70 269.6 177 70.6
Manes.01G201400 Manihot esculenta HOM05D004774 ORTHO05D005514 1.9e-70 269.6 203 66.0
Thhalv10028967m.g Eutrema salsugineum HOM05D004774 ORTHO05D005514 2.5e-70 269.2 201 60.2
CsaV3_7G030220 Cucumis sativus L. HOM05D004774 ORTHO05D005514 9.4e-70 267.3 208 62.5
Migut.D00377 Erythranthe guttata HOM05D004774 ORTHO05D005514 1.2e-69 266.9 199 62.3
CARHR006490 Cardamine hirsuta HOM05D004774 ORTHO05D005514 3.6e-69 265.4 200 59.5
EL10Ac3g05825 Beta vulgaris HOM05D004774 ORTHO05D005514 1.8e-68 263.1 192 60.9
COL.COLO4_05101 Corchorus olitorius HOM05D004774 ORTHO05D005514 2.3e-68 262.7 210 60.5
BraA08t35495Z Brassica rapa HOM05D004774 ORTHO05D005514 3.0e-68 262.3 193 59.6
Psat3g097920 Pisum sativum HOM05D004774 ORTHO05D005514 3.9e-68 261.9 195 63.6
RcHm_v2.0_Chr5g0063451 Rosa chinensis HOM05D004774 ORTHO05D005514 1.5e-67 260.0 197 62.9
Sp1g05530 Schrenkiella parvula HOM05D004774 ORTHO05D005514 1.5e-67 260.0 201 56.7
Sed0022653 Sechium edule HOM05D004774 ORTHO05D005514 1.5e-67 260.0 216 57.9
A08p35880 Brassica napus HOM05D004774 ORTHO05D005514 2.0e-67 259.6 193 60.1
C08p02690 Brassica napus HOM05D004774 ORTHO05D005514 2.0e-67 259.6 193 60.1
BolC8t47065H Brassica oleracea HOM05D004774 ORTHO05D005514 2.0e-67 259.6 193 60.1
Lsat_1_v5_gn_5_176641 Lactuca sativa HOM05D004774 ORTHO05D005514 2.0e-67 259.6 193 63.7
VMungo0331G0358 Vigna mungo HOM05D002747 ORTHO05D005514 2.6e-67 259.2 212 59.9
Hma1.2p1_1029F.1_g249620 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 4.4e-67 258.5 226 56.2
Hma1.2p1_1029F.1_g249641 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 4.4e-67 258.5 226 56.2
MELO3C023634.2 Cucumis melo HOM05D004774 ORTHO05D005514 7.4e-67 257.7 215 59.1
Phvul.010G020150 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 7.4e-67 257.7 212 58.5
Phvul.010G020200 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 7.4e-67 257.7 212 58.5
BolC8t52628H Brassica oleracea HOM05D004774 ORTHO05D005514 1.3e-66 256.9 192 59.4
Aqoxy7G03988 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 1.7e-66 256.5 192 61.5
Nitab4.5_0001427g0080 Nicotiana tabacum HOM05D004774 ORTHO05D005514 2.2e-66 256.1 178 68.5
PSO170G5180 Papaver somniferum HOM05D004774 ORTHO05D005514 3.7e-66 255.4 192 63.0
Aqoxy1G01668 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 4.8e-66 255.0 192 61.5
AUR62002186 Chenopodium quinoa HOM05D004774 ORTHO05D005514 6.3e-66 254.6 192 60.9
C08p51000 Brassica napus HOM05D004774 ORTHO05D005514 1.4e-65 253.4 198 57.1
PSO017G6900 Papaver somniferum HOM05D004774 ORTHO05D005514 1.4e-65 253.4 192 62.5
vmacro02628 Vaccinium macrocarpon HOM05D004774 ORTHO05D005514 1.4e-65 253.4 232 56.5
Aqoxy4G03157 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 2.4e-65 252.7 192 60.9
A09p66780 Brassica napus HOM05D004774 ORTHO05D005514 2.4e-65 252.7 193 58.0
Glyma.03G218500 Glycine max HOM05D004774 ORTHO05D005514 1.6e-64 250.0 206 58.3
SGA_v2.0_scaffold138G35272 Striga asiatica HOM05D004774 ORTHO05D005514 3.5e-64 248.8 221 53.8
Glyma.19G215300 Glycine max HOM05D004774 ORTHO05D005514 7.7e-64 247.7 206 58.3
FvH4_1g22880 Fragaria vesca HOM05D004774 ORTHO05D005514 1.3e-63 246.9 197 60.9
Rhsim13G0031100 Rhododendron simsii HOM05D004774 ORTHO05D005514 2.9e-63 245.7 238 53.8
AT1G06790 Arabidopsis thaliana HOM05D004774 ORTHO05D005514 6.5e-63 244.6 182 59.9
PGSC0003DMG400011166 Solanum tuberosum HOM05D004774 ORTHO05D005514 6.5e-63 244.6 184 65.2
FAN19G2773 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.9e-62 243.0 197 60.4
Sabra02G0035700 Salix brachista HOM05D004774 ORTHO05D005514 2.5e-62 242.7 178 64.6
BraA09t42016Z Brassica rapa HOM05D004774 ORTHO05D005514 4.2e-62 241.9 222 50.5
FAN23G2064 Fragaria x ananassa HOM05D004774 ORTHO05D005514 3.6e-61 238.8 215 55.8
Medtr8g072680 Medicago truncatula HOM05D004774 ORTHO05D005514 8.0e-61 237.7 194 59.8
Eucgr.B01492 Eucalyptus grandis HOM05D004774 ORTHO05D005514 1.4e-60 236.9 192 63.0
BcaC07g42048 Brassica carinata HOM05D004774 ORTHO05D005514 5.2e-60 235.0 192 55.2
ECA247G2354 Erigeron canadensis HOM05D002220 ORTHO05D008182 6.7e-60 234.6 191 61.8
DCAR_002682 Daucus carota HOM05D004774 ORTHO05D005514 2.6e-59 232.6 187 59.9
AUR62015525 Chenopodium quinoa HOM05D004774 ORTHO05D005514 2.2e-58 229.6 178 60.7
MBI04_g06856_MAGBIO Magnolia biondii HOM05D004774 ORTHO05D005514 2.2e-58 229.6 193 56.5
Sc04g0000740 Simmondsia chinensis HOM05D004774 ORTHO05D005514 2.2e-58 229.6 192 58.3
VMungo1309G2525 Vigna mungo HOM05D004774 ORTHO05D005514 6.3e-58 228.0 191 59.2
SMO012G0037 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 2.4e-57 226.1 192 53.1
Peaxi162Scf00934g00135 Petunia axillaris HOM05D004774 ORTHO05D005514 9.1e-57 224.2 192 57.8
SEGI_34955 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 2.0e-56 223.0 194 51.0
HPP92_027004 Vanilla planifolia HOM05D004774 ORTHO05D005514 4.5e-56 221.9 194 54.1
HPP92_015388 Vanilla planifolia HOM05D004774 ORTHO05D005514 7.7e-56 221.1 194 53.6
unitig_0.g1128 Utricularia gibba HOM05D004774 ORTHO05D005514 1.0e-55 220.7 259 44.4
FAN26G2874 Fragaria x ananassa HOM05D004774 ORTHO05D005514 2.9e-55 219.2 184 60.9
Mapoly0050s0102 Marchantia polymorpha HOM05D004774 ORTHO05D005514 1.1e-54 217.2 192 49.5
Pp3c7_17850 Physcomitrium patens HOM05D004774 ORTHO05D005514 1.2e-53 213.8 194 50.0
SGA_v2.0_scaffold43G16236 Striga asiatica HOM05D004774 ORTHO05D005514 2.7e-53 212.6 170 57.6
Os07g0477000 Oryza sativa ssp. japonica HOM05D004774 ORTHO05D005514 4.0e-52 208.8 198 51.5
Ca_27275_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 7.5e-51 204.5 156 64.1
AagrBONN_evm.TU.Sc2ySwM_344.4376 Anthoceros agrestis HOM05D004774 ORTHO05D005514 2.8e-50 202.6 195 46.2
Lj4A469T41 Lonicera japonica HOM05D004774 ORTHO05D005514 1.5e-46 190.3 135 70.4
PSO339G5528 Papaver somniferum HOM05D004774 ORTHO05D005514 1.2e-45 187.2 160 59.4
Cre12.g538400 Chlamydomonas reinhardtii HOM05D004774 ORTHO05D005514 2.3e-44 183.0 205 44.9
Nn1g02575 Nelumbo nucifera HOM05D004774 ORTHO05D005514 1.7e-42 176.8 119 63.9
BcaC07g42538 Brassica carinata HOM05D004774 ORTHO05D005514 1.8e-41 173.3 127 63.0
SMO298G0040 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 1.8e-41 173.3 193 46.1
SHI09938 Sapria himalayana HOM05D004774 ORTHO05D000023 1.5e-38 163.7 132 59.8
MCO09G483 Micromonas commoda HOM05D004774 ORTHO05D005514 3.3e-38 162.5 204 39.2
CDE07G1842 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 4.7e-37 158.7 192 42.7
CDE07G0321 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 2.3e-36 156.4 199 42.7
PGR119G0353 Punica granatum HOM05D004774 ORTHO05D005514 5.8e-35 151.8 128 57.8
FAN11G3419 Fragaria x ananassa HOM05D004774 ORTHO05D005514 3.2e-33 146.0 140 55.7
HanXRQChr14g0454071 Helianthus annuus HOM05D004774 ORTHO05D005514 3.5e-32 142.5 133 48.9
Aqoxy7G03987 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 1.0e-31 141.0 98 66.3
arahy.Tifrunner.gnm1.ann1.KW6T12 Arachis hypogaea HOM05D004774 ORTHO05D005514 3.0e-31 139.4 96 70.8
TPR.G27929 Trifolium pratense HOM05D004774 ORTHO05D005514 5.0e-31 138.7 104 65.4
Zm00001eb319960 Zea mays HOM05D004774 ORTHO05D005514 8.6e-31 137.9 114 57.9
FAN21G2916 Fragaria x ananassa HOM05D004774 ORTHO05D005514 7.3e-30 134.8 101 68.3
ATR0665G644 Amborella trichopoda HOM05D004774 ORTHO05D005514 4.0e-28 129.0 98 61.2
arahy.Tifrunner.gnm1.ann1.SKV00U Arachis hypogaea HOM05D004774 ORTHO05D005514 6.4e-26 121.7 99 48.5
GSVIVG01021945001 Vitis vinifera HOM05D004774 ORTHO05D005514 8.3e-26 121.3 98 63.3
SEGI_28935 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 4.6e-24 115.5 102 50.0
Haze_02362 Corylus avellana HOM05D004774 ORTHO05D005514 7.8e-24 114.8 70 75.7
Prupe.7G016800 Prunus persica HOM05D004774 ORTHO05D005514 1.0e-23 114.4 111 53.2
GSVIVG01021951001 Vitis vinifera HOM05D004774 ORTHO05D005514 3.6e-21 105.9 101 57.4
FvH4_3g35340 Fragaria vesca HOM05D004774 ORTHO05D005514 8.9e-20 101.3 102 52.9
Haze_02361 Corylus avellana HOM05D004774 ORTHO05D005514 1.5e-19 100.5 73 54.8
GSVIVG01000731001 Vitis vinifera HOM05D004774 ORTHO05D005514 5.8e-19 98.6 75 66.7
TPR.G27610 Trifolium pratense HOM05D004774 ORTHO05D005514 1.3e-18 97.4 68 67.6
TPR.G27925 Trifolium pratense HOM05D004774 ORTHO05D005514 1.7e-18 97.1 79 53.2
GSVIVG01000732001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.9e-17 93.6 66 63.6
GSVIVG01004486001 Vitis vinifera HOM05D004774 ORTHO05D005514 5.4e-17 92.0 70 58.6
TPR.G26057 Trifolium pratense HOM05D004774 ORTHO05D005514 7.8e-16 88.2 63 66.7
Ah.11g042480 Amaranthus hybridus HOM05D004774 ORTHO05D005514 5.1e-15 85.5 66 57.6
GSVIVG01000736001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.6e-13 80.5 46 73.9
BolC8t46832H Brassica oleracea HOM05D004774 ORTHO05D005514 1.8e-12 77.0 71 53.5
CBR_g31683 Chara braunii HOM05D004774 ORTHO05D005514 1.3e-10 70.9 118 35.6
Lj4A469T40 Lonicera japonica HOM05D004774 ORTHO05D005514 8.4e-10 68.2 46 69.6
GSVIVG01018600001 Vitis vinifera HOM05D004774 ORTHO05D005514 8.4e-10 68.2 58 55.2
MD02G1234500 Malus domestica HOM05D004774 ORTHO05D005514 1.1e-09 67.8 51 54.9
Lalb_Chr23g0275811 Lupinus albus HOM05D004774 ORTHO05D005514 3.2e-09 66.2 108 41.7
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 7.1e-09 65.1 103 35.0
GSVIVG01034583001 Vitis vinifera HOM05D004774 ORTHO05D005514 9.2e-09 64.7 52 61.5
BolC1t02432H Brassica oleracea HOM05D004774 ORTHO05D033846 2.7e-08 63.2 41 63.4
C08p41270 Brassica napus HOM05D004774 ORTHO05D005514 3.5e-08 62.8 41 63.4
A03p16490 Brassica napus HOM05D037327 ORTHO05D005514 3.0e-07 59.7 34 67.6
FAN28G1675 Fragaria x ananassa HOM05D004774 ORTHO05D005514 3.9e-07 59.3 61 54.1
Os03g0609200 Oryza sativa ssp. japonica HOM05D004774 ORTHO05D005514 9.6e-06 54.7 81 35.8


User provided reference genes

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