Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G3134 Cannabis sativa HOM05D003708 ORTHO05D004452 8.8e-87 323.6 160 100.0
CANSAT56G1534 Cannabis sativa HOM05D003708 ORTHO05D004452 2.3e-18 96.3 93 60.2
CANSAT56G4510 Cannabis sativa HOM05D003708 ORTHO05D004452 2.3e-18 96.3 93 60.2
Lj9C375G10 Lonicera japonica HOM05D002765 ORTHO05D003083 6.7e-18 94.7 47 95.7
Migut.N01253 Erythranthe guttata HOM05D003708 ORTHO05D004452 1.9e-17 93.2 93 57.0
Duzib248G1007 Durio zibethinus HOM05D003708 ORTHO05D004452 2.5e-17 92.8 100 53.0
ECA246G0885 Erigeron canadensis HOM05D003708 ORTHO05D004452 3.3e-17 92.4 47 95.7
Lsat_1_v5_gn_7_90480 Lactuca sativa HOM05D003708 ORTHO05D004452 3.3e-17 92.4 47 95.7
GSVIVG01034280001 Vitis vinifera HOM05D003708 ORTHO05D004452 3.3e-17 92.4 103 53.4
CsaV3_2G014950 Cucumis sativus L. HOM05D003708 ORTHO05D004452 4.3e-17 92.0 47 91.5
Dinv23495 Davidia involucrata HOM05D003708 ORTHO05D004452 5.6e-17 91.7 47 93.6
Potri.004G157500 Populus trichocarpa HOM05D003708 ORTHO05D004452 5.6e-17 91.7 47 93.6
Potri.009G119300 Populus trichocarpa HOM05D003708 ORTHO05D004452 5.6e-17 91.7 47 93.6
Sabra09G0091800 Salix brachista HOM05D003708 ORTHO05D004452 5.6e-17 91.7 47 93.6
Sp6g31720 Schrenkiella parvula HOM05D003708 ORTHO05D004452 5.6e-17 91.7 100 52.0
vmacro02084 Vaccinium macrocarpon HOM05D003708 ORTHO05D004452 5.6e-17 91.7 74 63.5
Oeu020743.1 Olea europaea HOM05D003708 ORTHO05D004452 7.4e-17 91.3 64 73.4
Peaxi162Scf00016g00522 Petunia axillaris HOM05D003708 ORTHO05D004452 7.4e-17 91.3 50 90.0
CiPaw.06G133600 Carya illinoinensis HOM05D003708 ORTHO05D004452 9.6e-17 90.9 95 53.7
ECA236G4291 Erigeron canadensis HOM05D003708 ORTHO05D004452 9.6e-17 90.9 47 93.6
Eucgr.G01640 Eucalyptus grandis HOM05D003708 ORTHO05D004452 9.6e-17 90.9 104 51.0
Rhsim11G0179400 Rhododendron simsii HOM05D003708 ORTHO05D004452 9.6e-17 90.9 47 93.6
HanXRQChr04g0127831 Helianthus annuus HOM05D003708 ORTHO05D004452 1.3e-16 90.5 47 91.5
Dinv42045 Davidia involucrata HOM05D003708 ORTHO05D004452 1.6e-16 90.1 47 89.4
Peaxi162Scf00684g00224 Petunia axillaris HOM05D003708 ORTHO05D004452 1.6e-16 90.1 64 73.4
GSVIVG01023813001 Vitis vinifera HOM05D003708 ORTHO05D004452 1.6e-16 90.1 47 89.4
Ca_24926_v3 Cicer arietinum L. HOM05D003708 ORTHO05D004452 2.1e-16 89.7 93 57.0
Gohir.A13G033200 Gossypium hirsutum HOM05D003708 ORTHO05D004452 2.1e-16 89.7 100 48.0
Gohir.D12G029400 Gossypium hirsutum HOM05D003708 ORTHO05D004452 2.1e-16 89.7 100 51.0
Gohir.D13G031100 Gossypium hirsutum HOM05D003708 ORTHO05D004452 2.1e-16 89.7 100 48.0
Gorai.008G030100 Gossypium raimondii HOM05D003708 ORTHO05D004452 2.1e-16 89.7 100 51.0
Gorai.013G035500 Gossypium raimondii HOM05D003708 ORTHO05D004452 2.1e-16 89.7 100 48.0
MD05G1063100 Malus domestica HOM05D003708 ORTHO05D004452 2.8e-16 89.4 47 89.4
Solyc01g109850.3 Solanum lycopersicum HOM05D003708 ORTHO05D004452 2.8e-16 89.4 93 57.0
Sopen01g052040 Solanum pennellii HOM05D003708 ORTHO05D004452 2.8e-16 89.4 93 57.0
Thecc.02G081300 Theobroma cacao HOM05D003708 ORTHO05D004452 2.8e-16 89.4 100 48.0
TAR628G0623 Trochodendron aralioides HOM05D003708 ORTHO05D004452 2.8e-16 89.4 92 53.3
CSS0004507 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 3.7e-16 89.0 47 89.4
Cfa011043 Carpinus fangiana HOM05D003708 ORTHO05D004452 3.7e-16 89.0 96 52.1
Thhalv10013369m.g Eutrema salsugineum HOM05D003708 ORTHO05D004452 3.7e-16 89.0 100 53.0
Lalb_Chr02g0156131 Lupinus albus HOM05D003708 ORTHO05D004452 3.7e-16 89.0 47 89.4
MD10G1070600 Malus domestica HOM05D003708 ORTHO05D004452 3.7e-16 89.0 47 89.4
Nitab4.5_0002169g0050 Nicotiana tabacum HOM05D003708 ORTHO05D004452 3.7e-16 89.0 47 89.4
A10p25890 Brassica napus HOM05D003708 ORTHO05D004452 4.8e-16 88.6 96 52.1
Cc02_g17290 Coffea canephora HOM05D003708 ORTHO05D004452 4.8e-16 88.6 95 52.6
Manes.04G073800 Manihot esculenta HOM05D003708 ORTHO05D004452 4.8e-16 88.6 104 51.0
TAR381G0899 Trochodendron aralioides HOM05D003708 ORTHO05D004452 4.8e-16 88.6 63 73.0
ClCG11G004220 Citrullus lanatus HOM05D003708 ORTHO05D004452 6.2e-16 88.2 47 87.2
COL.COLO4_25976 Corchorus olitorius HOM05D003708 ORTHO05D004452 6.2e-16 88.2 100 50.0
Haze_24305 Corylus avellana HOM05D003708 ORTHO05D004452 6.2e-16 88.2 95 52.6
MELO3C023315.2 Cucumis melo HOM05D003708 ORTHO05D004452 6.2e-16 88.2 47 87.2
FAN15G1456 Fragaria x ananassa HOM05D003708 ORTHO05D004452 6.2e-16 88.2 47 85.1
FAN27G1867 Fragaria x ananassa HOM05D003708 ORTHO05D004452 6.2e-16 88.2 47 85.1
PGR042G2933 Punica granatum HOM05D003708 ORTHO05D004452 6.2e-16 88.2 47 87.2
BraA10t44652Z Brassica rapa HOM05D003708 ORTHO05D004452 8.2e-16 87.8 96 51.0
Cpa.g.sc106.11 Carica papaya HOM05D003708 ORTHO05D004452 8.2e-16 87.8 47 87.2
Glyma.13G140700 Glycine max HOM05D003708 ORTHO05D004452 8.2e-16 87.8 47 85.1
Nn5g29691 Nelumbo nucifera HOM05D003708 ORTHO05D004452 8.2e-16 87.8 47 89.4
Oeu029157.1 Olea europaea HOM05D003708 ORTHO05D004452 8.2e-16 87.8 47 87.2
PSO384G0323 Papaver somniferum HOM05D003708 ORTHO05D004452 8.2e-16 87.8 47 87.2
QL11p044193 Quercus lobata HOM05D003708 ORTHO05D004452 8.2e-16 87.8 96 52.1
RcHm_v2.0_Chr6g0265651 Rosa chinensis HOM05D003708 ORTHO05D004452 8.2e-16 87.8 47 85.1
Sed0010943 Sechium edule HOM05D003708 ORTHO05D004452 8.2e-16 87.8 47 87.2
Sed0019329 Sechium edule HOM05D003708 ORTHO05D004452 8.2e-16 87.8 47 87.2
PGSC0003DMG400000737 Solanum tuberosum HOM05D003708 ORTHO05D004452 8.2e-16 87.8 47 89.4
SGA_v2.0_scaffold5G02835 Striga asiatica HOM05D003708 ORTHO05D004452 8.2e-16 87.8 96 53.1
AL3G26740 Arabidopsis lyrata HOM05D003708 ORTHO05D004452 1.1e-15 87.4 93 52.7
BcaC04g19189 Brassica carinata HOM05D003708 ORTHO05D004452 1.1e-15 87.4 100 51.0
C09p64980 Brassica napus HOM05D003708 ORTHO05D004452 1.1e-15 87.4 100 51.0
BolC9t59326H Brassica oleracea HOM05D003708 ORTHO05D004452 1.1e-15 87.4 100 51.0
CSS0012852 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 1.1e-15 87.4 47 87.2
CAN.G1058.12 Capsicum annuum HOM05D003708 ORTHO05D004452 1.1e-15 87.4 47 89.4
FAN20G3010 Fragaria x ananassa HOM05D003708 ORTHO05D004452 1.1e-15 87.4 49 81.6
Prupe.8G092300 Prunus persica HOM05D003708 ORTHO05D004452 1.1e-15 87.4 47 85.1
Gohir.A12G043000 Gossypium hirsutum HOM05D003708 ORTHO05D004452 1.4e-15 87.0 47 85.1
Nitab4.5_0008925g0010 Nicotiana tabacum HOM05D003708 ORTHO05D004452 1.4e-15 87.0 47 89.4
Atru.chr5.3061 Acer truncatum HOM05D003708 ORTHO05D004452 1.8e-15 86.7 47 87.2
EL10Ac9g21697 Beta vulgaris HOM05D003708 ORTHO05D004452 1.8e-15 86.7 93 52.7
Haze_02345 Corylus avellana HOM05D003708 ORTHO05D004452 2.4e-15 86.3 47 85.1
DCAR_009121 Daucus carota HOM05D003708 ORTHO05D004452 2.4e-15 86.3 47 85.1
Lj1g0019257 Lotus japonicus HOM05D003708 ORTHO05D004452 2.4e-15 86.3 93 52.7
PSO339G0466 Papaver somniferum HOM05D003708 ORTHO05D004452 2.4e-15 86.3 47 85.1
Aa31LG3G15320 Aethionema arabicum HOM05D003708 ORTHO05D004452 3.1e-15 85.9 96 52.1
BcaB01g05446 Brassica carinata HOM05D003708 ORTHO05D004452 3.1e-15 85.9 96 51.0
C03p06040 Brassica napus HOM05D003708 ORTHO05D004452 3.1e-15 85.9 96 51.0
Carub.0006s1041 Capsella rubella HOM05D003708 ORTHO05D004452 3.1e-15 85.9 96 51.0
FvH4_2g09380 Fragaria vesca HOM05D003708 ORTHO05D004452 3.1e-15 85.9 47 83.0
FAN24G3295 Fragaria x ananassa HOM05D003708 ORTHO05D004452 3.1e-15 85.9 47 83.0
Lalb_Chr20g0112711 Lupinus albus HOM05D003708 ORTHO05D004452 3.1e-15 85.9 100 47.0
TWI31G0810 Tripterygium wilfordii HOM05D003708 ORTHO05D004452 3.1e-15 85.9 92 52.2
AL6G22640 Arabidopsis lyrata HOM05D003708 ORTHO05D004452 4.0e-15 85.5 100 51.0
AT5G11880 Arabidopsis thaliana HOM05D003708 ORTHO05D004452 4.0e-15 85.5 100 51.0
BolC3t13114H Brassica oleracea HOM05D003708 ORTHO05D004452 4.0e-15 85.5 96 51.0
CSS0015853 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 4.0e-15 85.5 46 87.0
Carub.0001s3063 Capsella rubella HOM05D003708 ORTHO05D004452 4.0e-15 85.5 100 51.0
CARHR201280 Cardamine hirsuta HOM05D003708 ORTHO05D004452 4.0e-15 85.5 100 51.0
QL11p044250 Quercus lobata HOM05D003708 ORTHO05D004452 4.0e-15 85.5 96 51.0
Rhsim01G0265100 Rhododendron simsii HOM05D003708 ORTHO05D004452 4.0e-15 85.5 47 89.4
TWI79G1570 Tripterygium wilfordii HOM05D003708 ORTHO05D004452 4.0e-15 85.5 92 52.2
BcaB01g05447 Brassica carinata HOM05D003708 ORTHO05D004452 5.3e-15 85.1 100 47.0
Medtr5g022700 Medicago truncatula HOM05D003708 ORTHO05D004452 5.3e-15 85.1 47 85.1
Psat2g152880 Pisum sativum HOM05D003708 ORTHO05D004452 5.3e-15 85.1 47 85.1
TPR.G10514 Trifolium pratense HOM05D003708 ORTHO05D004452 5.3e-15 85.1 47 85.1
A03p05250 Brassica napus HOM05D003708 ORTHO05D004452 6.9e-15 84.7 96 50.0
CSS0011384 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 6.9e-15 84.7 47 85.1
CDE05G0123 Ceratophyllum demersum HOM05D003708 ORTHO05D004452 6.9e-15 84.7 99 48.5
Haze_02339 Corylus avellana HOM05D003708 ORTHO05D004452 6.9e-15 84.7 47 83.0
Hund06256 Selenicereus undatus HOM05D003708 ORTHO05D004452 6.9e-15 84.7 47 83.0
THA.LOC104799162 Tarenaya hassleriana HOM05D003708 ORTHO05D004452 6.9e-15 84.7 47 83.0
MSTRG.5405 Avicennia marina HOM05D003708 ORTHO05D004452 9.0e-15 84.3 47 83.0
HPP92_001592 Vanilla planifolia HOM05D003708 ORTHO05D004452 9.0e-15 84.3 91 53.8
arahy.Tifrunner.gnm1.ann1.F2CJ1Q Arachis hypogaea HOM05D003708 ORTHO05D004452 1.2e-14 84.0 47 83.0
CDE11G0056 Ceratophyllum demersum HOM05D003708 ORTHO05D004452 1.2e-14 84.0 99 48.5
Glyma.19G182000 Glycine max HOM05D003708 ORTHO05D004452 1.2e-14 84.0 47 85.1
AT3G14390 Arabidopsis thaliana HOM05D003708 ORTHO05D004452 1.5e-14 83.6 96 50.0
Lj5A195T74 Lonicera japonica HOM05D003708 ORTHO05D004452 1.5e-14 83.6 44 90.9
Ah.01g006350 Amaranthus hybridus HOM05D003708 ORTHO05D004452 2.0e-14 83.2 47 80.9
unitig_8.g4754 Utricularia gibba HOM05D003708 ORTHO05D004452 2.0e-14 83.2 47 80.9
ATR0585G004 Amborella trichopoda HOM05D003708 ORTHO05D004452 3.4e-14 82.4 63 65.1
arahy.Tifrunner.gnm1.ann1.U6BYIQ Arachis hypogaea HOM05D003708 ORTHO05D004452 3.4e-14 82.4 47 76.6
Glyma.03G181200 Glycine max HOM05D003708 ORTHO05D004452 3.4e-14 82.4 47 83.0
Sc08g0000610 Simmondsia chinensis HOM05D003708 ORTHO05D004452 4.5e-14 82.0 47 78.7
BraA03t09864Z Brassica rapa HOM05D003708 ORTHO05D004452 5.8e-14 81.6 47 78.7
MBI16_g07876_MAGBIO Magnolia biondii HOM05D003708 ORTHO05D004452 5.8e-14 81.6 46 78.3
Phvul.001G177300 Phaseolus vulgaris HOM05D003708 ORTHO05D004452 5.8e-14 81.6 47 83.0
VMungo1383G2129 Vigna mungo HOM05D003708 ORTHO05D004452 5.8e-14 81.6 47 83.0
Os02g0440000 Oryza sativa ssp. japonica HOM05D003708 ORTHO05D004452 7.6e-14 81.3 46 82.6
Ah.01g019180 Amaranthus hybridus HOM05D003708 ORTHO05D004452 1.0e-13 80.9 46 78.3
AUR62011292 Chenopodium quinoa HOM05D003708 ORTHO05D004452 1.3e-13 80.5 47 76.6
AUR62016767 Chenopodium quinoa HOM05D003708 ORTHO05D004452 1.3e-13 80.5 47 76.6
CSS0044853 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 2.2e-13 79.7 48 81.2
SEGI_12812 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 2.2e-13 79.7 49 73.5
Nn1g04897 Nelumbo nucifera HOM05D003708 ORTHO05D004452 2.9e-13 79.3 47 78.7
AagrBONN_evm.TU.Sc2ySwM_228.2627 Anthoceros agrestis HOM05D003708 ORTHO05D004452 8.4e-13 77.8 92 47.8
Lj6C687T4 Lonicera japonica HOM05D003708 ORTHO05D004452 2.5e-12 76.3 47 76.6
SEGI_39868 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 2.5e-12 76.3 45 77.8
Aqoxy3G00171 Aquilegia oxysepala HOM05D003708 ORTHO05D004452 4.2e-12 75.5 47 72.3
Zm00001eb164230 Zea mays HOM05D003708 ORTHO05D004452 5.5e-12 75.1 46 76.1
CBR_g46280 Chara braunii HOM05D003708 ORTHO05D004452 9.3e-12 74.3 93 45.2
Zm00001eb406820 Zea mays HOM05D003708 ORTHO05D004452 3.5e-11 72.4 46 73.9
Ciclev10028284m.g Citrus clementina HOM05D003708 ORTHO05D004452 1.0e-10 70.9 40 85.0
Pp3c24_7340 Physcomitrium patens HOM05D003708 ORTHO05D004452 3.0e-10 69.3 46 67.4
Pp3c24_7341 Physcomitrium patens HOM05D003708 ORTHO05D004452 3.0e-10 69.3 46 67.4
SMO301G0021 Selaginella moellendorffii HOM05D003708 ORTHO05D004452 3.0e-10 69.3 94 43.6
Mapoly0005s0182 Marchantia polymorpha HOM05D003708 ORTHO05D004452 6.7e-10 68.2 88 42.0
Lj3C651T3 Lonicera japonica HOM05D003708 ORTHO05D004452 8.7e-10 67.8 47 72.3
Pp3c23_16600 Physcomitrium patens HOM05D003708 ORTHO05D004452 5.7e-09 65.1 46 60.9
vmacro02085 Vaccinium macrocarpon HOM05D001037 ORTHO05D000888 9.7e-09 64.3 47 70.2
Lj3C650T5 Lonicera japonica HOM05D003708 ORTHO05D004452 1.6e-08 63.5 50 64.0
GSVIVG01029866001 Vitis vinifera HOM05D003708 ORTHO05D004452 3.7e-08 62.4 37 78.4
Cre01.g050100 Chlamydomonas reinhardtii HOM05D003708 ORTHO05D004452 1.8e-07 60.1 47 66.0
Duzib268G1397 Durio zibethinus HOM05D003708 ORTHO05D004452 2.4e-07 59.7 64 48.4
Eucgr.D02438 Eucalyptus grandis HOM05D003708 ORTHO05D004452 5.9e-06 55.1 29 89.7


User provided reference genes

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