Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G2372 Cannabis sativa HOM05D004712 ORTHO05D005306 2.2e-199 698.7 341 100.0
Prupe.1G416100 Prunus persica HOM05D004712 ORTHO05D005306 2.1e-170 602.4 340 84.4
TAR624G0834 Trochodendron aralioides HOM05D004712 ORTHO05D005306 3.1e-166 588.6 340 83.5
Ciclev10008867m.g Citrus clementina HOM05D004712 ORTHO05D005306 5.9e-165 584.3 340 83.5
Dinv23416 Davidia involucrata HOM05D004712 ORTHO05D005306 8.5e-164 580.5 340 82.1
QL02p001773 Quercus lobata HOM05D004712 ORTHO05D005306 1.5e-163 579.7 341 81.8
GSVIVG01035336001 Vitis vinifera HOM05D004712 ORTHO05D005306 1.0e-161 573.5 341 81.8
MD08G1074400 Malus domestica HOM05D004712 ORTHO05D005306 1.4e-161 573.2 340 81.5
Nn6g35377 Nelumbo nucifera HOM05D004712 ORTHO05D005306 2.3e-161 572.4 340 81.2
RcHm_v2.0_Chr6g0310381 Rosa chinensis HOM05D004712 ORTHO05D005306 4.0e-161 571.6 340 80.3
Atru.chr7.2032 Acer truncatum HOM05D004712 ORTHO05D005306 2.8e-159 565.5 323 83.0
COL.COLO4_21017 Corchorus olitorius HOM05D004712 ORTHO05D005306 2.8e-159 565.5 308 86.4
Nn6g35381 Nelumbo nucifera HOM05D004712 ORTHO05D005306 3.7e-159 565.1 347 79.0
FAN20G0488 Fragaria x ananassa HOM05D004712 ORTHO05D005306 8.3e-159 563.9 341 79.8
FAN27G0349 Fragaria x ananassa HOM05D004712 ORTHO05D005306 2.4e-158 562.4 340 79.4
Cc08_g10100 Coffea canephora HOM05D004712 ORTHO05D005306 4.1e-158 561.6 335 80.0
CSS0042817 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 5.4e-158 561.2 341 81.5
ClCG08G016850 Citrullus lanatus HOM05D004712 ORTHO05D005306 5.4e-158 561.2 341 76.5
Potri.018G058900 Populus trichocarpa HOM05D004712 ORTHO05D005306 5.4e-158 561.2 340 78.2
Thecc.09G050100 Theobroma cacao HOM05D004712 ORTHO05D005306 1.2e-157 560.1 336 80.4
CSS0005003 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 2.7e-157 558.9 338 78.7
CsaV3_2G025770 Cucumis sativus L. HOM05D004712 ORTHO05D005306 2.7e-157 558.9 341 76.2
Lalb_Chr22g0355941 Lupinus albus HOM05D004712 ORTHO05D005306 2.7e-157 558.9 346 78.6
CiPaw.15G042700 Carya illinoinensis HOM05D004712 ORTHO05D005306 5.9e-157 557.8 339 78.5
Migut.A00161 Erythranthe guttata HOM05D004712 ORTHO05D005306 5.9e-157 557.8 335 77.6
GSVIVG01016906001 Vitis vinifera HOM05D004712 ORTHO05D005306 1.3e-156 556.6 332 79.8
FvH4_2g32310 Fragaria vesca HOM05D004712 ORTHO05D005306 2.9e-156 555.4 340 78.2
Manes.03G046000 Manihot esculenta HOM05D004712 ORTHO05D005306 3.8e-156 555.1 334 79.0
Hund03367 Selenicereus undatus HOM05D004712 ORTHO05D005306 3.8e-156 555.1 341 79.5
VMungo0647G0552 Vigna mungo HOM05D004712 ORTHO05D005306 3.8e-156 555.1 345 79.4
SalBow4G3242 Salvia bowleyana HOM05D004712 ORTHO05D005306 1.1e-155 553.5 332 78.0
Hma1.2p1_1266F.1_g271360 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 2.5e-155 552.4 309 84.1
Gohir.A05G044400 Gossypium hirsutum HOM05D004712 ORTHO05D005306 3.3e-155 552.0 341 78.0
Lj5g0015176 Lotus japonicus HOM05D004712 ORTHO05D005306 3.3e-155 552.0 340 78.8
FAN15G0413 Fragaria x ananassa HOM05D004712 ORTHO05D005306 7.3e-155 550.8 340 78.5
FAN24G2925 Fragaria x ananassa HOM05D004712 ORTHO05D005306 7.3e-155 550.8 340 78.2
Gohir.D05G046000 Gossypium hirsutum HOM05D004712 ORTHO05D005306 1.6e-154 549.7 335 78.2
Duzib168G2010 Durio zibethinus HOM05D004712 ORTHO05D005306 2.1e-154 549.3 333 79.3
Actinidia21731 Actinidia chinensis HOM05D004712 ORTHO05D005306 3.6e-154 548.5 338 77.2
Potri.006G234000 Populus trichocarpa HOM05D004712 ORTHO05D005306 3.6e-154 548.5 339 77.3
TWI63G0904 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 8.0e-154 547.4 341 78.0
Glyma.17G231700 Glycine max HOM05D004712 ORTHO05D005306 1.4e-153 546.6 342 78.1
Aqoxy7G03946 Aquilegia oxysepala HOM05D004712 ORTHO05D005306 3.0e-153 545.4 315 79.7
Haze_18228 Corylus avellana HOM05D004712 ORTHO05D005306 6.8e-153 544.3 341 78.0
Glyma.14G091700 Glycine max HOM05D004712 ORTHO05D005306 6.8e-153 544.3 343 77.8
Ca_13194_v3 Cicer arietinum L. HOM05D004712 ORTHO05D005306 1.2e-152 543.5 345 77.1
HanXRQChr17g0538901 Helianthus annuus HOM05D004712 ORTHO05D005306 2.0e-152 542.7 340 74.7
TPR.G13042 Trifolium pratense HOM05D004712 ORTHO05D005306 3.4e-152 542.0 338 76.3
AUR62009206 Chenopodium quinoa HOM05D004712 ORTHO05D005306 4.4e-152 541.6 340 75.6
Phvul.001G032800 Phaseolus vulgaris HOM05D004712 ORTHO05D005306 5.7e-152 541.2 345 75.9
BcaB06g29616 Brassica carinata HOM05D004712 ORTHO05D005306 7.5e-152 540.8 340 75.0
Medtr1g016970 Medicago truncatula HOM05D004712 ORTHO05D005306 7.5e-152 540.8 340 77.1
THA.LOC104803739 Tarenaya hassleriana HOM05D004712 ORTHO05D005306 9.8e-152 540.4 339 75.8
Duzib150G0899 Durio zibethinus HOM05D004712 ORTHO05D005306 1.3e-151 540.0 343 76.4
Sc09g0009600 Simmondsia chinensis HOM05D004712 ORTHO05D005306 1.7e-151 539.7 341 76.2
PSO210G0832 Papaver somniferum HOM05D004712 ORTHO05D005306 2.2e-151 539.3 315 79.7
Psat6g019200 Pisum sativum HOM05D004712 ORTHO05D005306 1.4e-150 536.6 353 74.2
Sp4g05810 Schrenkiella parvula HOM05D004712 ORTHO05D005306 2.4e-150 535.8 340 74.7
Peaxi162Scf00840g00117 Petunia axillaris HOM05D004712 ORTHO05D005306 4.1e-150 535.0 336 76.5
C04p55830 Brassica napus HOM05D004712 ORTHO05D005306 5.4e-150 534.6 341 74.5
PSO210G7282 Papaver somniferum HOM05D004712 ORTHO05D005306 7.0e-150 534.3 315 79.0
QL05p017273 Quercus lobata HOM05D004712 ORTHO05D005306 7.0e-150 534.3 332 76.2
Aa31LG5G9770 Aethionema arabicum HOM05D004712 ORTHO05D005306 1.6e-149 533.1 351 74.6
A04p20130 Brassica napus HOM05D004712 ORTHO05D005306 1.6e-149 533.1 341 74.2
BraA04t17594Z Brassica rapa HOM05D004712 ORTHO05D005306 1.6e-149 533.1 341 74.2
AT2G25910 Arabidopsis thaliana HOM05D004712 ORTHO05D005306 2.7e-149 532.3 340 74.1
EL10Ac2g03950 Beta vulgaris HOM05D004712 ORTHO05D005306 2.7e-149 532.3 341 74.8
ATR0789G022 Amborella trichopoda HOM05D004712 ORTHO05D005306 3.5e-149 531.9 333 75.7
Sabra18G0050600 Salix brachista HOM05D004712 ORTHO05D005306 3.5e-149 531.9 338 74.6
BcaC02g08320 Brassica carinata HOM05D004712 ORTHO05D005306 4.6e-149 531.6 341 74.2
BolC4t27113H Brassica oleracea HOM05D004712 ORTHO05D005306 4.6e-149 531.6 341 74.2
QL05p017569 Quercus lobata HOM05D004712 ORTHO05D005306 1.0e-148 530.4 332 76.2
CARHR115280 Cardamine hirsuta HOM05D004712 ORTHO05D005306 1.3e-148 530.0 340 75.0
Thhalv10002033m.g Eutrema salsugineum HOM05D004712 ORTHO05D005306 3.0e-148 528.9 340 73.5
AL4G17960 Arabidopsis lyrata HOM05D004712 ORTHO05D005306 5.0e-148 528.1 341 74.5
Sabra06G0182200 Salix brachista HOM05D004712 ORTHO05D005306 8.6e-148 527.3 335 75.2
Cfa017921 Carpinus fangiana HOM05D004712 ORTHO05D005306 3.3e-147 525.4 341 75.7
ECA246G0363 Erigeron canadensis HOM05D004712 ORTHO05D005306 3.3e-147 525.4 339 73.2
MELO3C010771.2 Cucumis melo HOM05D004712 ORTHO05D005306 7.3e-147 524.2 324 74.4
DCAR_004451 Daucus carota HOM05D004712 ORTHO05D005306 9.5e-147 523.9 344 76.5
Rhsim08G0230100 Rhododendron simsii HOM05D004712 ORTHO05D005306 3.6e-146 521.9 383 67.6
Solyc08g065880.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 4.7e-146 521.5 333 73.3
PGR031G0938 Punica granatum HOM05D004712 ORTHO05D005306 6.2e-146 521.2 325 75.7
Sopen08g019580 Solanum pennellii HOM05D004712 ORTHO05D005306 6.2e-146 521.2 333 73.3
Lsat_1_v5_gn_3_27140 Lactuca sativa HOM05D004712 ORTHO05D005306 1.2e-144 516.9 309 76.7
Rhsim12G0204300 Rhododendron simsii HOM05D004712 ORTHO05D005306 4.9e-143 511.5 337 71.8
arahy.Tifrunner.gnm1.ann1.QZ1T53 Arachis hypogaea HOM05D004712 ORTHO05D005306 1.1e-142 510.4 341 73.3
AUR62040203 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.1e-142 510.4 341 72.4
arahy.Tifrunner.gnm1.ann1.289CQF Arachis hypogaea HOM05D004712 ORTHO05D005306 9.2e-142 507.3 341 73.3
vmacro05273 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 4.6e-141 505.0 331 74.3
Nitab4.5_0005029g0040 Nicotiana tabacum HOM05D004712 ORTHO05D005306 1.3e-140 503.4 332 72.6
Nitab4.5_0000359g0220 Nicotiana tabacum HOM05D004712 ORTHO05D005306 3.9e-140 501.9 332 72.6
TWI34G1658 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 3.9e-140 501.9 324 75.3
MBI04_g12189_MAGBIO Magnolia biondii HOM05D004712 ORTHO05D005306 1.5e-139 500.0 355 70.1
Gorai.009G047400 Gossypium raimondii HOM05D004712 ORTHO05D005306 1.8e-137 493.0 297 79.5
Nitab4.5_0005661g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 5.2e-137 491.5 339 70.2
PGSC0003DMG401002514 Solanum tuberosum HOM05D004712 ORTHO05D005306 5.2e-137 491.5 339 68.7
Lj7A695G32 Lonicera japonica HOM05D004712 ORTHO05D005306 5.8e-136 488.0 318 75.5
Os01g0566900 Oryza sativa ssp. japonica HOM05D004712 ORTHO05D005306 1.4e-134 483.4 310 71.9
Gohir.D03G057300 Gossypium hirsutum HOM05D004712 ORTHO05D005306 1.9e-134 483.0 334 67.4
SEGI_23712 Sequoiadendron giganteum HOM05D004712 ORTHO05D005306 1.9e-134 483.0 321 69.5
Peaxi162Scf00038g01243 Petunia axillaris HOM05D004712 ORTHO05D005306 9.2e-134 480.7 334 70.4
Zm00001eb159970 Zea mays HOM05D004712 ORTHO05D005306 1.7e-132 476.5 319 71.5
CAN.G20.6 Capsicum annuum HOM05D004712 ORTHO05D005306 3.9e-132 475.3 286 76.9
Sed0015351 Sechium edule HOM05D004712 ORTHO05D005306 7.3e-131 471.1 333 68.8
Ah.10g034640 Amaranthus hybridus HOM05D004712 ORTHO05D005306 2.1e-130 469.5 359 64.6
Gohir.A02G116301 Gossypium hirsutum HOM05D004712 ORTHO05D005306 4.7e-130 468.4 307 69.7
MD15G1062100 Malus domestica HOM05D004712 ORTHO05D005306 4.7e-130 468.4 340 68.2
HPP92_009150 Vanilla planifolia HOM05D004712 ORTHO05D005306 4.7e-130 468.4 342 66.1
Eucgr.C00628 Eucalyptus grandis HOM05D004712 ORTHO05D005306 3.1e-129 465.7 267 82.0
Nitab4.5_0010821g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 3.1e-129 465.7 318 70.1
Zm00001eb356940 Zea mays HOM05D004712 ORTHO05D005306 5.2e-129 464.9 331 68.9
Dinv30410 Davidia involucrata HOM05D004712 ORTHO05D005306 5.8e-128 461.5 263 82.9
AUR62040198 Chenopodium quinoa HOM05D004712 ORTHO05D005306 4.9e-127 458.4 319 69.6
AUR62031977 Chenopodium quinoa HOM05D004712 ORTHO05D005306 5.4e-126 454.9 303 68.6
Solyc03g121250.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 4.3e-123 445.3 283 73.1
Lj5A50G64 Lonicera japonica HOM05D004712 ORTHO05D005306 2.0e-120 436.4 287 72.5
Mapoly0072s0029 Marchantia polymorpha HOM05D004712 ORTHO05D005306 4.9e-119 431.8 308 64.6
Manes.16G077100 Manihot esculenta HOM05D004712 ORTHO05D005306 4.2e-118 428.7 246 82.9
AagrBONN_evm.TU.Sc2ySwM_228.3302 Anthoceros agrestis HOM05D004712 ORTHO05D005306 9.3e-118 427.6 306 64.1
Sopen03g040060 Solanum pennellii HOM05D004712 ORTHO05D005306 3.1e-113 412.5 287 69.7
Pp3c15_8210 Physcomitrium patens HOM05D004712 ORTHO05D005306 3.4e-112 409.1 314 61.1
vmacro17006 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 1.3e-111 407.1 408 53.4
Sopen01g026340 Solanum pennellii HOM05D000014 ORTHO05D005306 1.7e-111 406.8 308 63.6
SMO174G0103 Selaginella moellendorffii HOM05D004712 ORTHO05D005306 8.4e-111 404.4 312 61.2
Carub.0004s0573 Capsella rubella HOM05D004712 ORTHO05D005306 1.1e-99 367.5 222 77.0
Glyma.04G087900 Glycine max HOM05D004712 ORTHO05D005306 2.2e-95 353.2 305 60.7
COL.COLO4_30565 Corchorus olitorius HOM05D004712 ORTHO05D005306 2.5e-94 349.7 255 65.5
AUR62022272 Chenopodium quinoa HOM05D004712 ORTHO05D005306 3.0e-92 342.8 226 68.6
CAN.G1143.35 Capsicum annuum HOM05D004712 ORTHO05D005306 6.3e-90 335.1 247 65.2
unitig_748.g8268 Utricularia gibba HOM05D004712 ORTHO05D005306 3.8e-87 325.9 301 53.5
Pp3c9_13080 Physcomitrium patens HOM05D004712 ORTHO05D005306 6.7e-84 315.1 234 63.2
unitig_32.g10885 Utricularia gibba HOM05D004712 ORTHO05D005306 5.5e-78 295.4 268 57.5
Solyc01g060200.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 1.5e-72 277.3 290 50.7
Cpa.g.sc1834.1 Carica papaya HOM05D004712 ORTHO05D005306 5.0e-71 272.3 175 76.0
CDE06G1081 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 1.1e-70 271.2 170 73.5
Gorai.003G060400 Gossypium raimondii HOM05D004712 ORTHO05D005306 1.6e-61 240.7 180 66.7
SGA_v2.0_scaffold88G27214 Striga asiatica HOM05D004712 ORTHO05D005306 5.2e-60 235.7 141 75.2
Cpa.g.c30793.3 Carica papaya HOM05D004712 ORTHO05D005306 3.3e-59 233.0 130 80.0
CDE06G1637 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 2.0e-51 207.2 122 79.5
Glyma.20G062400 Glycine max HOM05D004712 ORTHO05D005306 2.4e-33 147.1 90 76.7
ATR0626G141 Amborella trichopoda HOM05D004712 ORTHO05D005306 3.5e-32 143.3 171 49.7
Cpa.g.sc131.9 Carica papaya HOM05D004712 ORTHO05D005306 1.1e-25 121.7 75 68.0
Cpa.g.sc131.11 Carica papaya HOM05D004712 ORTHO05D005306 1.3e-23 114.8 64 81.2
Hma1.2p1_0051F.1_g029750 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 3.9e-23 113.2 66 78.8
TAR636G2080 Trochodendron aralioides HOM05D000850 ORTHO05D000266 2.8e-21 107.1 80 67.5
Cpa.g.sc131.8 Carica papaya HOM05D004712 ORTHO05D005306 6.2e-21 105.9 77 66.2
Cc04_g02330 Coffea canephora HOM05D004712 ORTHO05D005306 2.6e-19 100.5 169 37.9
COL.COLO4_30564 Corchorus olitorius HOM05D004712 ORTHO05D005306 7.8e-16 89.0 55 76.4
MSTRG.22613 Avicennia marina HOM05D004712 ORTHO05D005306 9.5e-14 82.0 76 52.6
Cre03.g152425 Chlamydomonas reinhardtii HOM05D004712 ORTHO05D005306 2.0e-11 74.3 225 26.2
EL10Ac9g21163 Beta vulgaris HOM05D004712 ORTHO05D005306 8.4e-10 68.9 81 48.1
Cre03.g152400 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D028597 5.4e-09 66.2 201 27.9
MCO15G238 Micromonas commoda HOM05D015906 ORTHO05D005306 5.4e-09 66.2 95 37.9
Nn4g24691 Nelumbo nucifera HOM05D004712 ORTHO05D005306 7.1e-09 65.9 41 65.9
MCO09G663 Micromonas commoda HOM05D015906 ORTHO05D005306 1.6e-08 64.7 190 26.8
FAN23G2178 Fragaria x ananassa HOM05D002024 ORTHO05D004352 3.0e-07 60.5 209 24.9
MELO3C008822.2 Cucumis melo HOM05D002024 ORTHO05D004352 1.5e-06 58.2 155 29.0
FAN26G3161 Fragaria x ananassa HOM05D002024 ORTHO05D004352 1.5e-06 58.2 204 24.5
FvH4_1g28500 Fragaria vesca HOM05D002024 ORTHO05D004352 1.9e-06 57.8 204 24.5
FAN19G0777 Fragaria x ananassa HOM05D002024 ORTHO05D004352 1.9e-06 57.8 204 24.5
CsaV3_4G012120 Cucumis sativus L. HOM05D002024 ORTHO05D004352 2.5e-06 57.4 154 29.2
Thecc.05G244100 Theobroma cacao HOM05D002024 ORTHO05D004352 3.3e-06 57.0 202 25.2
BraA04t18006Z Brassica rapa HOM05D002024 ORTHO05D007288 5.6e-06 56.2 155 30.3
COL.COLO4_28619 Corchorus olitorius HOM05D002024 ORTHO05D004352 5.6e-06 56.2 202 24.3
Duzib128G1716 Durio zibethinus HOM05D002024 ORTHO05D004352 5.6e-06 56.2 202 24.8
Nn6g32382 Nelumbo nucifera HOM05D002024 ORTHO05D004352 5.6e-06 56.2 154 27.9
ATR0697G132 Amborella trichopoda HOM05D002024 ORTHO05D004352 7.3e-06 55.8 154 26.6
BcaB06g28594 Brassica carinata HOM05D002024 ORTHO05D007288 7.3e-06 55.8 185 28.1
Cre03.g205300 Chlamydomonas reinhardtii HOM05D062317 ORTHO05D140869 7.3e-06 55.8 149 30.2
Duzib106G0860 Durio zibethinus HOM05D002024 ORTHO05D004352 7.3e-06 55.8 154 28.6
SMO351G0038 Selaginella moellendorffii HOM05D002024 ORTHO05D004352 7.3e-06 55.8 212 27.8
Aqoxy1G00536 Aquilegia oxysepala HOM05D002024 ORTHO05D004352 9.6e-06 55.5 200 24.5
AT1G54440 Arabidopsis thaliana HOM05D002024 ORTHO05D004352 9.6e-06 55.5 153 28.1
Cre03.g205921 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D005306 9.6e-06 55.5 208 26.0
Pp3c4_22010 Physcomitrium patens HOM05D002024 ORTHO05D004352 9.6e-06 55.5 203 24.1
Psat3g086680 Pisum sativum HOM05D002024 ORTHO05D004352 9.6e-06 55.5 205 24.9


User provided reference genes

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